assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009806735.1_ASM980673v1	NZ_CP047115	Salmonella enterica subsp. enterica strain SCSM4.1 chromosome, complete genome	1	598657-598757	1	CRISPRCasFinder	no		cas3,PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,WYL,RT	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,WYL,RT	NA,NA|177aa|down_1|NZ_CP047115.1_600275_600806_-	NA|448aa|up_9|NZ_CP047115.1_584735_586079_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP047115.1_586706_587159_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP047115.1_587186_588689_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP047115.1_588713_591392_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP047115.1_591612_592014_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP047115.1_592013_592958_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP047115.1_593108_593378_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP047115.1_593619_595755_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP047115.1_595864_596749_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP047115.1_596854_596935_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP047115.1_598970_600215_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|177aa|down_1|NZ_CP047115.1_600275_600806_-	NA	NA|240aa|down_2|NZ_CP047115.1_600964_601684_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|336aa|down_3|NZ_CP047115.1_601661_602669_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_4|NZ_CP047115.1_602846_603743_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_5|NZ_CP047115.1_603733_604729_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_6|NZ_CP047115.1_604945_605470_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_7|NZ_CP047115.1_605463_605967_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_8|NZ_CP047115.1_605953_606271_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_9|NZ_CP047115.1_606308_606752_+	PRK03467, PRK03467, hypothetical protein; Provisional
GCF_009806735.1_ASM980673v1	NZ_CP047115	Salmonella enterica subsp. enterica strain SCSM4.1 chromosome, complete genome	2	948023-949516	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,WYL,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	23,24,24	24	TypeI-E	cas3,PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,WYL,RT	NA,NA	NA|381aa|up_9|NZ_CP047115.1_933821_934964_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|NZ_CP047115.1_935007_937764_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|NZ_CP047115.1_937821_939117_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|NZ_CP047115.1_939168_941403_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|NZ_CP047115.1_941486_941843_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|NZ_CP047115.1_941808_942105_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|NZ_CP047115.1_942872_943673_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP047115.1_943900_945538_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP047115.1_945620_946919_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP047115.1_947054_947726_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP047115.1_949613_950411_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP047115.1_950498_950861_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP047115.1_951284_953084_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP047115.1_953083_954796_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP047115.1_954871_955606_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP047115.1_955693_956647_-	PRK15379, PRK15379, type III secretion system effector SopD	cse2gr11|187aa|down_6|NZ_CP047115.1_961318_961879_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_7|NZ_CP047115.1_961892_962951_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|down_8|NZ_CP047115.1_962961_963708_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|down_9|NZ_CP047115.1_963689_964340_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI
GCF_009806735.1_ASM980673v1	NZ_CP047115	Salmonella enterica subsp. enterica strain SCSM4.1 chromosome, complete genome	3	965647-966959	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,WYL,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	1	1	965676-965707	NZ_CP047115.1_1798617-1798586	I-E:I-E:I-E	20,21,21	21	TypeI-E	cas3,PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,WYL,RT	NA,NA	NA|600aa|up_9|NZ_CP047115.1_951284_953084_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_8|NZ_CP047115.1_953083_954796_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_7|NZ_CP047115.1_954871_955606_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_6|NZ_CP047115.1_955693_956647_-	PRK15379, PRK15379, type III secretion system effector SopD	cse2gr11|187aa|up_5|NZ_CP047115.1_961318_961879_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP047115.1_961892_962951_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP047115.1_962961_963708_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP047115.1_963689_964340_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP047115.1_964336_965257_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP047115.1_965256_965550_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP047115.1_967624_968671_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP047115.1_968921_969830_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP047115.1_969839_971279_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP047115.1_971265_971871_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP047115.1_971888_972245_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP047115.1_972435_972747_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP047115.1_972765_973476_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP047115.1_973475_973955_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP047115.1_973951_975001_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP047115.1_974981_975743_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_009806735.1_ASM980673v1	NZ_CP047115	Salmonella enterica subsp. enterica strain SCSM4.1 chromosome, complete genome	4	967033-967610	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,WYL,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAAC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	27,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	TypeI-E	cas3,PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,WYL,RT	NA,NA	NA|600aa|up_9|NZ_CP047115.1_951284_953084_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_8|NZ_CP047115.1_953083_954796_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_7|NZ_CP047115.1_954871_955606_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_6|NZ_CP047115.1_955693_956647_-	PRK15379, PRK15379, type III secretion system effector SopD	cse2gr11|187aa|up_5|NZ_CP047115.1_961318_961879_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP047115.1_961892_962951_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP047115.1_962961_963708_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP047115.1_963689_964340_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP047115.1_964336_965257_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP047115.1_965256_965550_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP047115.1_967624_968671_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP047115.1_968921_969830_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP047115.1_969839_971279_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP047115.1_971265_971871_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP047115.1_971888_972245_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP047115.1_972435_972747_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP047115.1_972765_973476_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP047115.1_973475_973955_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP047115.1_973951_975001_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP047115.1_974981_975743_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
