assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009791455.1_ASM979145v1	NZ_CP046954	Aeromonas hydrophila strain HX-3 chromosome, complete genome	1	50205-50436	1	PILER-CR	no		WYL,cas3,DEDDh,csa3,cas5,DinG,RT	Orphan	GCGGCCTTTGCGAGGCAACTTCCAGTGGGGCTGTAACCC	39	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,DEDDh,csa3,cas5,DinG,RT	NA|153aa|up_8|NZ_CP046954.1_40404_40863_+,NA|54aa|up_7|NZ_CP046954.1_40986_41148_-,NA|256aa|down_4|NZ_CP046954.1_55733_56501_-,NA|529aa|down_5|NZ_CP046954.1_57130_58717_-	NA|285aa|up_9|NZ_CP046954.1_39506_40361_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|153aa|up_8|NZ_CP046954.1_40404_40863_+	NA	NA|54aa|up_7|NZ_CP046954.1_40986_41148_-	NA	NA|310aa|up_6|NZ_CP046954.1_41132_42062_-	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional	NA|325aa|up_5|NZ_CP046954.1_42123_43098_+	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold	NA|338aa|up_4|NZ_CP046954.1_43076_44090_-	PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed	NA|145aa|up_3|NZ_CP046954.1_44281_44716_-	PRK15118, PRK15118, universal stress protein UspA	NA|396aa|up_2|NZ_CP046954.1_45182_46370_+	PRK13656, PRK13656, enoyl-[acyl-carrier-protein] reductase FabV	NA|597aa|up_1|NZ_CP046954.1_46386_48177_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|175aa|up_0|NZ_CP046954.1_48386_48911_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|407aa|down_0|NZ_CP046954.1_50548_51769_-	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|212aa|down_1|NZ_CP046954.1_51969_52605_+	PRK10958, PRK10958, leucine export protein LeuE; Provisional	NA|205aa|down_2|NZ_CP046954.1_52704_53319_+	TIGR03505, FimV_core, FimV N-terminal domain	NA|224aa|down_3|NZ_CP046954.1_53571_54243_-	COG3637, COG3637, Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane]	NA|256aa|down_4|NZ_CP046954.1_55733_56501_-	NA	NA|529aa|down_5|NZ_CP046954.1_57130_58717_-	NA	NA|227aa|down_6|NZ_CP046954.1_59094_59775_-	PRK15299, PRK15299, fimbrial chaperone protein StiB; Provisional	NA|821aa|down_7|NZ_CP046954.1_60113_62576_-	pfam16967, TcfC, E-set like domain	NA|221aa|down_8|NZ_CP046954.1_62614_63277_-	pfam18649, EcpB_C, EcpB C-terminal domain	NA|193aa|down_9|NZ_CP046954.1_63343_63922_-	pfam16449, MatB, Fimbrillin MatB
GCF_009791455.1_ASM979145v1	NZ_CP046954	Aeromonas hydrophila strain HX-3 chromosome, complete genome	2	317319-317425	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,cas5,DinG,RT	Orphan	GCAGTGAAAACAGAGCCTTGGGCTC	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,cas5,DinG,RT	NA|151aa|up_3|NZ_CP046954.1_313901_314354_+,NA	NA|630aa|up_9|NZ_CP046954.1_306178_308068_-	PRK11388, PRK11388, DNA-binding transcriptional regulator DhaR; Provisional	NA|298aa|up_8|NZ_CP046954.1_308156_309050_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|373aa|up_7|NZ_CP046954.1_309217_310336_+	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase	NA|235aa|up_6|NZ_CP046954.1_310400_311105_-	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|364aa|up_5|NZ_CP046954.1_311302_312394_-	PRK10983, PRK10983, AI-2E family transporter YdiK	NA|460aa|up_4|NZ_CP046954.1_312396_313776_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|151aa|up_3|NZ_CP046954.1_313901_314354_+	NA	NA|258aa|up_2|NZ_CP046954.1_314408_315182_-	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein	NA|413aa|up_1|NZ_CP046954.1_315340_316579_-	PRK10811, rne, ribonuclease E; Reviewed	NA|109aa|up_0|NZ_CP046954.1_316794_317121_+	pfam07383, DUF1496, Protein of unknown function (DUF1496)	NA|483aa|down_0|NZ_CP046954.1_317511_318960_-	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase	NA|162aa|down_1|NZ_CP046954.1_319123_319609_+	PRK10140, PRK10140, N-acetyltransferase	NA|286aa|down_2|NZ_CP046954.1_319605_320463_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|300aa|down_3|NZ_CP046954.1_320661_321561_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|147aa|down_4|NZ_CP046954.1_321709_322150_-	pfam09980, DUF2214, Predicted membrane protein (DUF2214)	NA|537aa|down_5|NZ_CP046954.1_322259_323870_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|220aa|down_6|NZ_CP046954.1_323885_324545_-	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|336aa|down_7|NZ_CP046954.1_324584_325592_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|259aa|down_8|NZ_CP046954.1_325598_326375_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|300aa|down_9|NZ_CP046954.1_326367_327267_-	COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only]
GCF_009791455.1_ASM979145v1	NZ_CP046954	Aeromonas hydrophila strain HX-3 chromosome, complete genome	3	701112-701216	2	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,cas5,DinG,RT	Orphan	CTAAACGCCAAGGTTTGATCCGAATGAAATCTG	33	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,cas5,DinG,RT	NA,NA	NA|519aa|up_9|NZ_CP046954.1_693112_694669_+	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|379aa|up_8|NZ_CP046954.1_694681_695818_+	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|39aa|up_7|NZ_CP046954.1_695832_695949_+	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|104aa|up_6|NZ_CP046954.1_695935_696247_+	pfam09600, Cyd_oper_YbgE, Cyd operon protein YbgE (Cyd_oper_YbgE)	NA|136aa|up_5|NZ_CP046954.1_696352_696760_+	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase	NA|230aa|up_4|NZ_CP046954.1_696749_697439_+	TIGR02796, Protein_TolQ, TolQ protein	NA|149aa|up_3|NZ_CP046954.1_697438_697885_+	TIGR02801, Protein_TolR, TolR protein	NA|388aa|up_2|NZ_CP046954.1_697890_699054_+	pfam06519, TolA, TolA C-terminal	NA|442aa|up_1|NZ_CP046954.1_699148_700474_+	PRK04792, tolB, Tol-Pal system protein TolB	NA|175aa|up_0|NZ_CP046954.1_700523_701048_+	PRK10802, PRK10802, peptidoglycan-associated lipoprotein Pal	NA|702aa|down_0|NZ_CP046954.1_703600_705706_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|345aa|down_1|NZ_CP046954.1_705885_706920_+	PRK09375, PRK09375, quinolinate synthase NadA	NA|289aa|down_2|NZ_CP046954.1_706990_707857_-	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like	NA|332aa|down_3|NZ_CP046954.1_707972_708968_-	PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase	NA|759aa|down_4|NZ_CP046954.1_709227_711504_+	PRK11052, malQ, 4-alpha-glucanotransferase; Provisional	NA|726aa|down_5|NZ_CP046954.1_711586_713764_+	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|714aa|down_6|NZ_CP046954.1_713763_715905_+	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX	NA|131aa|down_7|NZ_CP046954.1_715961_716354_+	pfam01641, SelR, SelR domain	NA|384aa|down_8|NZ_CP046954.1_716434_717586_-	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family	NA|148aa|down_9|NZ_CP046954.1_717951_718395_-	cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X
GCF_009791455.1_ASM979145v1	NZ_CP046954	Aeromonas hydrophila strain HX-3 chromosome, complete genome	4	793747-793863	3	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,cas5,DinG,RT	Orphan	GCTCACGCCTAACCAAATGAAAAACCGTG	29	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,cas5,DinG,RT	NA|147aa|up_5|NZ_CP046954.1_788835_789276_+,NA	NA|258aa|up_9|NZ_CP046954.1_785582_786356_+	PRK15066, PRK15066, inner membrane transport permease; Provisional	NA|384aa|up_8|NZ_CP046954.1_786590_787742_+	COG1775, HgdB, Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]	NA|261aa|up_7|NZ_CP046954.1_787751_788534_+	TIGR00241, Uncharacterized_protein_MJ0004, CoA-substrate-specific enzyme activase, putative	NA|87aa|up_6|NZ_CP046954.1_788530_788791_+	pfam11823, DUF3343, Protein of unknown function (DUF3343)	NA|147aa|up_5|NZ_CP046954.1_788835_789276_+	NA	NA|176aa|up_4|NZ_CP046954.1_789277_789805_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|286aa|up_3|NZ_CP046954.1_789869_790727_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|265aa|up_2|NZ_CP046954.1_790914_791709_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|170aa|up_1|NZ_CP046954.1_791705_792215_-	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|500aa|up_0|NZ_CP046954.1_792226_793726_-	PRK11623, pcnB, poly(A) polymerase I; Provisional	NA|301aa|down_0|NZ_CP046954.1_793958_794861_-	TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase	NA|150aa|down_1|NZ_CP046954.1_794980_795430_-	PRK10778, dksA, RNA polymerase-binding protein DksA	NA|248aa|down_2|NZ_CP046954.1_795549_796293_-	PRK00347, PRK00347, DNA/RNA nuclease SfsA	NA|180aa|down_3|NZ_CP046954.1_796335_796875_-	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase	NA|816aa|down_4|NZ_CP046954.1_797019_799467_+	PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional	NA|774aa|down_5|NZ_CP046954.1_799717_802039_+	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B	NA|134aa|down_6|NZ_CP046954.1_802081_802483_+	cd08352, VOC_Bs_YwkD_like, vicinal oxygen chelate (VOC) family protein  Bacillus subtilis YwkD and similar proteins	NA|107aa|down_7|NZ_CP046954.1_802580_802901_-	PRK10650, PRK10650, multidrug/spermidine efflux SMR transporter subunit MdtI	NA|155aa|down_8|NZ_CP046954.1_802888_803353_-	PRK10452, PRK10452, multidrug/spermidine efflux SMR transporter subunit MdtJ	NA|294aa|down_9|NZ_CP046954.1_803509_804391_+	COG0583, LysR, Transcriptional regulator [Transcription]
GCF_009791455.1_ASM979145v1	NZ_CP046954	Aeromonas hydrophila strain HX-3 chromosome, complete genome	5	2082021-2082173	4	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,cas5,DinG,RT	Orphan	GGTGCACGGCGCTGCGCTTGTTGCACCCTACGGTGGGATGTCTGTGG	47	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,cas5,DinG,RT	NA,NA|224aa|down_1|NZ_CP046954.1_2084808_2085480_+,NA|254aa|down_2|NZ_CP046954.1_2085601_2086363_-,NA|133aa|down_5|NZ_CP046954.1_2089697_2090096_+	NA|633aa|up_9|NZ_CP046954.1_2070174_2072073_-	TIGR00475, Selenocysteine-specific_elongation_factor, selenocysteine-specific elongation factor SelB	NA|479aa|up_8|NZ_CP046954.1_2072077_2073514_-	TIGR00474, selA, L-seryl-tRNA(Sec) selenium transferase	NA|170aa|up_7|NZ_CP046954.1_2074068_2074578_-	PRK11544, hycI, hydrogenase 3 maturation protease; Provisional	NA|138aa|up_6|NZ_CP046954.1_2074577_2074991_-	PRK15084, PRK15084, formate hydrogenlyase maturation protein HycH; Provisional	NA|272aa|up_5|NZ_CP046954.1_2074983_2075799_-	COG3260, COG3260, Ni,Fe-hydrogenase III small subunit [Energy production and conversion]	NA|186aa|up_4|NZ_CP046954.1_2075798_2076356_-	PRK08222, PRK08222, hydrogenase 4 subunit H; Validated	NA|573aa|up_3|NZ_CP046954.1_2076365_2078084_-	COG3261, HycE, Ni,Fe-hydrogenase III large subunit [Energy production and conversion]	NA|318aa|up_2|NZ_CP046954.1_2078164_2079118_-	COG0650, HyfC, Formate hydrogenlyase subunit 4 [Energy production and conversion]	NA|628aa|up_1|NZ_CP046954.1_2079119_2081003_-	PRK06521, PRK06521, hydrogenase 4 subunit B; Validated	NA|222aa|up_0|NZ_CP046954.1_2081002_2081668_-	cd10554, HycB_like, HycB, HydN and similar proteins	NA|623aa|down_0|NZ_CP046954.1_2082328_2084197_-	PRK10745, trkD, low affinity potassium transporter Kup	NA|224aa|down_1|NZ_CP046954.1_2084808_2085480_+	NA	NA|254aa|down_2|NZ_CP046954.1_2085601_2086363_-	NA	NA|200aa|down_3|NZ_CP046954.1_2086825_2087425_+	PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed	NA|715aa|down_4|NZ_CP046954.1_2087471_2089616_+	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|133aa|down_5|NZ_CP046954.1_2089697_2090096_+	NA	NA|710aa|down_6|NZ_CP046954.1_2090450_2092580_+	PRK15429, PRK15429, formate hydrogenlyase transcriptional activator FlhA	NA|286aa|down_7|NZ_CP046954.1_2092590_2093448_+	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|201aa|down_8|NZ_CP046954.1_2093572_2094175_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|638aa|down_9|NZ_CP046954.1_2094408_2096322_+	PRK05218, PRK05218, heat shock protein 90; Provisional
GCF_009791455.1_ASM979145v1	NZ_CP046954	Aeromonas hydrophila strain HX-3 chromosome, complete genome	6	2993933-2994088	5	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,cas5,DinG,RT	Orphan	TCATGCACTCACCTCCTGCAGCCAGCGGGTGACAGATAATACGCAGGCC	49	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,cas5,DinG,RT	NA,NA|139aa|down_9|NZ_CP046954.1_3002000_3002417_+	NA|78aa|up_9|NZ_CP046954.1_2982671_2982905_-	pfam07191, zinc-ribbons_6, zinc-ribbons	NA|500aa|up_8|NZ_CP046954.1_2983003_2984503_-	PRK00093, PRK00093, GTP-binding protein Der; Reviewed	NA|395aa|up_7|NZ_CP046954.1_2984577_2985762_-	PRK11138, PRK11138, outer membrane biogenesis protein BamB; Provisional	NA|217aa|up_6|NZ_CP046954.1_2985754_2986405_-	pfam09976, TPR_21, Tetratricopeptide repeat-like domain	NA|426aa|up_5|NZ_CP046954.1_2986408_2987686_-	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|372aa|up_4|NZ_CP046954.1_2987824_2988940_-	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|313aa|up_3|NZ_CP046954.1_2988950_2989889_-	PRK10856, PRK10856, cytoskeleton protein RodZ	NA|264aa|up_2|NZ_CP046954.1_2989878_2990670_-	TIGR02521, Uncharacterized_protein_HI_0366, type IV pilus biogenesis/stability protein PilW	NA|368aa|up_1|NZ_CP046954.1_2990682_2991786_-	PRK11194, PRK11194, ribosomal RNA large subunit methyltransferase N; Provisional	NA|143aa|up_0|NZ_CP046954.1_2991954_2992383_-	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|434aa|down_0|NZ_CP046954.1_2994146_2995448_-	PRK05015, PRK05015, aminopeptidase B; Provisional	NA|113aa|down_1|NZ_CP046954.1_2995605_2995944_-	TIGR02007, 2Fe-2S_ferredoxin, ferredoxin, 2Fe-2S type, ISC system	NA|616aa|down_2|NZ_CP046954.1_2995945_2997793_-	PRK05183, hscA, chaperone protein HscA; Provisional	NA|173aa|down_3|NZ_CP046954.1_2997821_2998340_-	PRK05014, hscB, co-chaperone HscB; Provisional	NA|108aa|down_4|NZ_CP046954.1_2998462_2998786_-	TIGR02011, Protein_yfhF	NA|128aa|down_5|NZ_CP046954.1_2998801_2999185_-	PRK11325, PRK11325, scaffold protein; Provisional	NA|405aa|down_6|NZ_CP046954.1_2999226_3000441_-	PRK14012, PRK14012, IscS subfamily cysteine desulfurase	NA|168aa|down_7|NZ_CP046954.1_3000498_3001002_-	PRK10857, PRK10857, Fe-S cluster assembly transcriptional regulator IscR	NA|242aa|down_8|NZ_CP046954.1_3001095_3001821_-	PRK15114, PRK15114, tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional	NA|139aa|down_9|NZ_CP046954.1_3002000_3002417_+	NA
GCF_009791455.1_ASM979145v1	NZ_CP046954	Aeromonas hydrophila strain HX-3 chromosome, complete genome	7	3218686-3218867	6	CRISPRCasFinder	no	DEDDh	WYL,cas3,DEDDh,csa3,cas5,DinG,RT	Unclear	GCAGACCCCCGCGAAAGACGCAGCCGCAGCGGCC	34	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,DEDDh,csa3,cas5,DinG,RT	NA|97aa|up_8|NZ_CP046954.1_3205517_3205808_+,NA|125aa|down_0|NZ_CP046954.1_3221176_3221551_+	NA|282aa|up_9|NZ_CP046954.1_3204626_3205472_-	PRK05421, PRK05421, endonuclease/exonuclease/phosphatase family protein	NA|97aa|up_8|NZ_CP046954.1_3205517_3205808_+	NA	NA|132aa|up_7|NZ_CP046954.1_3205814_3206210_-	PRK10694, PRK10694, acyl-CoA thioester hydrolase YciA	NA|271aa|up_6|NZ_CP046954.1_3206338_3207151_-	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|333aa|up_5|NZ_CP046954.1_3207409_3208408_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|639aa|up_4|NZ_CP046954.1_3208587_3210504_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|839aa|up_3|NZ_CP046954.1_3210588_3213105_-	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|113aa|up_2|NZ_CP046954.1_3213476_3213815_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|172aa|up_1|NZ_CP046954.1_3213896_3214412_-	pfam11993, Ribosomal_S4Pg, Ribosomal S4P (gammaproteobacterial)	NA|1262aa|up_0|NZ_CP046954.1_3214896_3218682_-	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|down_0|NZ_CP046954.1_3221176_3221551_+	NA	NA|93aa|down_1|NZ_CP046954.1_3221632_3221911_+	PRK15441, PRK15441, peptidyl-prolyl cis-trans isomerase C; Provisional	NA|187aa|down_2|NZ_CP046954.1_3221925_3222486_-	pfam01625, PMSR, Peptide methionine sulfoxide reductase	NA|225aa|down_3|NZ_CP046954.1_3222537_3223212_+	pfam07386, DUF1499, Protein of unknown function (DUF1499)	NA|194aa|down_4|NZ_CP046954.1_3223223_3223805_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|723aa|down_5|NZ_CP046954.1_3223804_3225973_+	PRK06370, PRK06370, FAD-containing oxidoreductase	NA|427aa|down_6|NZ_CP046954.1_3225882_3227163_+	PRK11622, PRK11622, ABC transporter substrate-binding protein	NA|559aa|down_7|NZ_CP046954.1_3227162_3228839_+	COG4135, COG4135, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|213aa|down_8|NZ_CP046954.1_3228862_3229501_+	COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|205aa|down_9|NZ_CP046954.1_3229515_3230130_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]
GCF_009791455.1_ASM979145v1	NZ_CP046954	Aeromonas hydrophila strain HX-3 chromosome, complete genome	8	3423787-3424227	1,7	CRT,CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,cas5,DinG,RT	Orphan	NTNNGTCAGCACNTTGGC,GTCAGCACGTTGGCACCGCCCAGCAG	18,26	0	0	NA	NA	NA:NA	5,7	7	Orphan	WYL,cas3,DEDDh,csa3,cas5,DinG,RT	NA,NA|133aa|down_1|NZ_CP046954.1_3426754_3427153_-	NA|147aa|up_9|NZ_CP046954.1_3401485_3401926_-	PRK05689, fliJ, flagella biosynthesis chaperone FliJ	NA|444aa|up_8|NZ_CP046954.1_3401952_3403284_-	PRK08972, fliI, flagellar protein export ATPase FliI	NA|269aa|up_7|NZ_CP046954.1_3403356_3404163_-	PRK05687, fliH, flagellar assembly protein FliH	NA|354aa|up_6|NZ_CP046954.1_3404227_3405289_-	PRK05686, fliG, flagellar motor switch protein G; Validated	NA|561aa|up_5|NZ_CP046954.1_3405281_3406964_-	PRK06007, fliF, flagellar basal body M-ring protein FliF	NA|106aa|up_4|NZ_CP046954.1_3407051_3407369_-	PRK00253, fliE, flagellar hook-basal body protein FliE; Reviewed	NA|259aa|up_3|NZ_CP046954.1_3407572_3408349_-	cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module	NA|437aa|up_2|NZ_CP046954.1_3408577_3409888_-	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]	NA|443aa|up_1|NZ_CP046954.1_3409939_3411268_+	PRK14862, rimO, 30S ribosomal protein S12 methylthiotransferase RimO	NA|165aa|up_0|NZ_CP046954.1_3411368_3411863_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|150aa|down_0|NZ_CP046954.1_3426272_3426722_-	pfam02794, HlyC, RTX toxin acyltransferase family	NA|133aa|down_1|NZ_CP046954.1_3426754_3427153_-	NA	NA|696aa|down_2|NZ_CP046954.1_3427461_3429549_+	TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family	NA|455aa|down_3|NZ_CP046954.1_3429545_3430910_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|723aa|down_4|NZ_CP046954.1_3430912_3433081_+	TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family	NA|236aa|down_5|NZ_CP046954.1_3433186_3433894_+	PRK10816, PRK10816, two-component system response regulator PhoP	NA|453aa|down_6|NZ_CP046954.1_3433917_3435276_+	PRK10815, PRK10815, two-component system sensor histidine kinase PhoQ	NA|323aa|down_7|NZ_CP046954.1_3435578_3436547_-	PRK00292, glk, glucokinase; Provisional	NA|288aa|down_8|NZ_CP046954.1_3436887_3437751_+	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional	NA|480aa|down_9|NZ_CP046954.1_3437914_3439354_+	PRK05826, PRK05826, pyruvate kinase; Provisional
GCF_009791455.1_ASM979145v1	NZ_CP046954	Aeromonas hydrophila strain HX-3 chromosome, complete genome	9	3844531-3844626	8	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,cas5,DinG,RT	Orphan	GCCACCACCGCAGCAGCCGCCGTG	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,cas5,DinG,RT	NA|112aa|up_5|NZ_CP046954.1_3839348_3839684_+,NA|290aa|up_4|NZ_CP046954.1_3839797_3840667_+,NA|229aa|down_1|NZ_CP046954.1_3845533_3846220_+	NA|285aa|up_9|NZ_CP046954.1_3834148_3835003_+	COG4395, COG4395, Uncharacterized protein conserved in bacteria [Function unknown]	NA|514aa|up_8|NZ_CP046954.1_3835181_3836723_+	cd01948, EAL, EAL domain	NA|613aa|up_7|NZ_CP046954.1_3836955_3838794_+	TIGR01530, Probable_5'-nucleotidase, NAD pyrophosphatase/5'-nucleotidase NadN	NA|114aa|up_6|NZ_CP046954.1_3838880_3839222_+	pfam11169, DUF2956, Protein of unknown function (DUF2956)	NA|112aa|up_5|NZ_CP046954.1_3839348_3839684_+	NA	NA|290aa|up_4|NZ_CP046954.1_3839797_3840667_+	NA	NA|469aa|up_3|NZ_CP046954.1_3840755_3842162_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|269aa|up_2|NZ_CP046954.1_3842313_3843120_-	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|323aa|up_1|NZ_CP046954.1_3843239_3844208_+	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|72aa|up_0|NZ_CP046954.1_3844222_3844438_+	pfam04102, SlyX, SlyX	NA|69aa|down_0|NZ_CP046954.1_3845287_3845494_-	COG3529, COG3529, Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]	NA|229aa|down_1|NZ_CP046954.1_3845533_3846220_+	NA	NA|300aa|down_2|NZ_CP046954.1_3846401_3847301_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|362aa|down_3|NZ_CP046954.1_3847269_3848355_+	PRK10985, PRK10985, putative hydrolase; Provisional	NA|384aa|down_4|NZ_CP046954.1_3848333_3849485_-	pfam00990, GGDEF, Diguanylate cyclase, GGDEF domain	NA|81aa|down_5|NZ_CP046954.1_3849584_3849827_+	PRK04966, PRK04966, hypothetical protein; Provisional	NA|449aa|down_6|NZ_CP046954.1_3850256_3851603_-	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|379aa|down_7|NZ_CP046954.1_3851823_3852960_+	PRK11658, PRK11658, UDP-4-amino-4-deoxy-L-arabinose aminotransferase	NA|327aa|down_8|NZ_CP046954.1_3852966_3853947_+	PRK10714, PRK10714, undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional	NA|664aa|down_9|NZ_CP046954.1_3853943_3855935_+	PRK08125, PRK08125, bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA
