assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009789595.1_ASM978959v1	NZ_CP046904	Massilia flava strain DSM 26639 chromosome, complete genome	1	47072-47307	1	PILER-CR	no	DEDDh	DEDDh,csa3,WYL,DinG,cas3,RT	Unclear	CTGACGCACCGCAAGGTGCCGTCACACGGCGGAGCCTGCGCCGC	44	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|190aa|up_4|NZ_CP046904.1_40993_41563_+,NA	NA|262aa|up_9|NZ_CP046904.1_36251_37037_-	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase	NA|257aa|up_8|NZ_CP046904.1_37054_37825_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|147aa|up_7|NZ_CP046904.1_37817_38258_+	PRK00203, rnhA, ribonuclease H; Reviewed	DEDDh|233aa|up_6|NZ_CP046904.1_38315_39014_+	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional	NA|429aa|up_5|NZ_CP046904.1_39262_40549_-	pfam10011, DUF2254, Predicted membrane protein (DUF2254)	NA|190aa|up_4|NZ_CP046904.1_40993_41563_+	NA	NA|506aa|up_3|NZ_CP046904.1_41577_43095_+	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	NA|468aa|up_2|NZ_CP046904.1_43192_44596_+	pfam04087, DUF389, Domain of unknown function (DUF389)	NA|154aa|up_1|NZ_CP046904.1_44800_45262_-	pfam03713, DUF305, Domain of unknown function (DUF305)	NA|177aa|up_0|NZ_CP046904.1_46401_46932_+	pfam02357, NusG, Transcription termination factor nusG	NA|3599aa|down_0|NZ_CP046904.1_47378_58175_+	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1207aa|down_1|NZ_CP046904.1_58176_61797_+	cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations	NA|869aa|down_2|NZ_CP046904.1_61857_64464_+	COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only]	NA|300aa|down_3|NZ_CP046904.1_64521_65421_+	cd16329, LolA_like, proteins similar to periplasmic molecular chaperone LolA, the outer membrane lipoprotein receptor LolB and the periplasmic protein RseB	NA|469aa|down_4|NZ_CP046904.1_65420_66827_+	PRK03427, PRK03427, cell division protein ZipA; Provisional	NA|424aa|down_5|NZ_CP046904.1_66843_68115_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|257aa|down_6|NZ_CP046904.1_68153_68924_+	cd08876, START_1, Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family	NA|247aa|down_7|NZ_CP046904.1_68920_69661_+	cd08876, START_1, Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family	NA|94aa|down_8|NZ_CP046904.1_69698_69980_+	COG0236, AcpP, Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|5060aa|down_9|NZ_CP046904.1_70020_85200_+	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_009789595.1_ASM978959v1	NZ_CP046904	Massilia flava strain DSM 26639 chromosome, complete genome	2	813656-813804	1	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	GTGGTCGCGGGTCGGCGGCGCAAGCAACAACCCACGGCAGAAGCCGGGGTCAG	53	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|92aa|up_9|NZ_CP046904.1_802434_802710_-,NA|278aa|up_4|NZ_CP046904.1_809861_810695_-,NA|49aa|up_3|NZ_CP046904.1_810747_810894_-,NA|127aa|down_1|NZ_CP046904.1_816138_816519_+	NA|92aa|up_9|NZ_CP046904.1_802434_802710_-	NA	NA|496aa|up_8|NZ_CP046904.1_803093_804581_+	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	NA|346aa|up_7|NZ_CP046904.1_804605_805643_+	cd18619, GH43_CoXyl43_like, Glycosyl hydrolase family 43 protein such as metagenomic beta-xylosidase/alpha-L-arabinofuranosidase CoXyl43	NA|456aa|up_6|NZ_CP046904.1_805816_807184_+	pfam13281, DUF4071, Domain of unknown function (DUF4071)	NA|852aa|up_5|NZ_CP046904.1_807230_809786_+	pfam01734, Patatin, Patatin-like phospholipase	NA|278aa|up_4|NZ_CP046904.1_809861_810695_-	NA	NA|49aa|up_3|NZ_CP046904.1_810747_810894_-	NA	NA|177aa|up_2|NZ_CP046904.1_811139_811670_-	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|285aa|up_1|NZ_CP046904.1_811749_812604_-	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]	NA|317aa|up_0|NZ_CP046904.1_812700_813651_+	PRK09393, ftrA, transcriptional activator FtrA; Provisional	NA|709aa|down_0|NZ_CP046904.1_813869_815996_-	COG3211, PhoX, Predicted phosphatase [General function prediction only]	NA|127aa|down_1|NZ_CP046904.1_816138_816519_+	NA	NA|260aa|down_2|NZ_CP046904.1_816524_817304_+	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown]	NA|297aa|down_3|NZ_CP046904.1_817368_818259_-	pfam06439, DUF1080, Domain of Unknown Function (DUF1080)	NA|287aa|down_4|NZ_CP046904.1_818424_819285_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|189aa|down_5|NZ_CP046904.1_819281_819848_+	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|577aa|down_6|NZ_CP046904.1_819849_821580_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|279aa|down_7|NZ_CP046904.1_821816_822653_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|497aa|down_8|NZ_CP046904.1_822649_824140_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|340aa|down_9|NZ_CP046904.1_824117_825137_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]
GCF_009789595.1_ASM978959v1	NZ_CP046904	Massilia flava strain DSM 26639 chromosome, complete genome	3	1598496-1598578	2	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	CCGCCAACAAGTTCGGGTGACAG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|96aa|up_5|NZ_CP046904.1_1593267_1593555_-,NA|165aa|up_4|NZ_CP046904.1_1593563_1594058_-,NA|74aa|up_2|NZ_CP046904.1_1594602_1594824_+,NA|176aa|down_8|NZ_CP046904.1_1607143_1607671_-	NA|383aa|up_9|NZ_CP046904.1_1589183_1590332_+	COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]	NA|111aa|up_8|NZ_CP046904.1_1590328_1590661_-	cd10451, GIY-YIG_LuxR_like, GIY-YIG domain of LuxR and ArsR family transcriptional regulators, and uncharacterized hypothetical proteins found in bacteria	NA|187aa|up_7|NZ_CP046904.1_1590657_1591218_-	pfam09998, DUF2239, Uncharacterized protein conserved in bacteria (DUF2239)	NA|575aa|up_6|NZ_CP046904.1_1591472_1593197_+	TIGR03397, acid_phos_Burk, acid phosphatase, Burkholderia-type	NA|96aa|up_5|NZ_CP046904.1_1593267_1593555_-	NA	NA|165aa|up_4|NZ_CP046904.1_1593563_1594058_-	NA	NA|97aa|up_3|NZ_CP046904.1_1594139_1594430_-	pfam05954, Phage_GPD, Phage late control gene D protein (GPD)	NA|74aa|up_2|NZ_CP046904.1_1594602_1594824_+	NA	NA|473aa|up_1|NZ_CP046904.1_1594988_1596407_+	PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional	NA|530aa|up_0|NZ_CP046904.1_1596746_1598336_-	PRK08137, PRK08137, amidase; Provisional	NA|192aa|down_0|NZ_CP046904.1_1598651_1599227_-	PRK00529, PRK00529, elongation factor P; Validated	NA|384aa|down_1|NZ_CP046904.1_1599294_1600446_-	pfam10093, EarP, Elongation-Factor P (EF-P) rhamnosyltransferase EarP	NA|289aa|down_2|NZ_CP046904.1_1600812_1601679_+	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs	NA|123aa|down_3|NZ_CP046904.1_1601958_1602327_-	COG5605, COG5605, Predicted small integral membrane protein [Function unknown]	NA|238aa|down_4|NZ_CP046904.1_1602333_1603047_-	cd02864, Heme_Cu_Oxidase_III_1, Heme-copper oxidase subunit III subfamily	NA|250aa|down_5|NZ_CP046904.1_1603058_1603808_-	cd02865, Heme_Cu_Oxidase_III_2, Heme-copper oxidase subunit III subfamily	NA|627aa|down_6|NZ_CP046904.1_1603804_1605685_-	TIGR02891, Probable_cytochrome_c_oxidase_subunit_1-beta, cytochrome c oxidase, subunit I	NA|447aa|down_7|NZ_CP046904.1_1605795_1607136_-	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]	NA|176aa|down_8|NZ_CP046904.1_1607143_1607671_-	NA	NA|473aa|down_9|NZ_CP046904.1_1608596_1610015_-	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed
GCF_009789595.1_ASM978959v1	NZ_CP046904	Massilia flava strain DSM 26639 chromosome, complete genome	4	2458682-2458825	3	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	GGAAATGCGGGTGTCAAACTAAAAATAACTGTTCAGCACCAAATAAA	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|118aa|up_2|NZ_CP046904.1_2454051_2454405_-,NA|91aa|down_7|NZ_CP046904.1_2469526_2469799_-	NA|440aa|up_9|NZ_CP046904.1_2444657_2445977_+	TIGR03356, BGL, beta-galactosidase	NA|449aa|up_8|NZ_CP046904.1_2446047_2447394_+	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily	NA|192aa|up_7|NZ_CP046904.1_2447405_2447981_+	cd02231, cupin_BLL6423-like, Bradyrhizobium japonicum BLL6423 and related proteins, cupin domain	NA|953aa|up_6|NZ_CP046904.1_2447977_2450836_-	COG3903, COG3903, Predicted ATPase [General function prediction only]	NA|304aa|up_5|NZ_CP046904.1_2451160_2452072_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|296aa|up_4|NZ_CP046904.1_2452142_2453030_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|227aa|up_3|NZ_CP046904.1_2453053_2453734_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|118aa|up_2|NZ_CP046904.1_2454051_2454405_-	NA	NA|477aa|up_1|NZ_CP046904.1_2454550_2455981_-	COG4222, COG4222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|817aa|up_0|NZ_CP046904.1_2456097_2458548_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|519aa|down_0|NZ_CP046904.1_2458890_2460447_+	pfam04820, Trp_halogenase, Tryptophan halogenase	NA|337aa|down_1|NZ_CP046904.1_2460443_2461454_+	cd06290, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	NA|103aa|down_2|NZ_CP046904.1_2461457_2461766_-	pfam06906, DUF1272, Protein of unknown function (DUF1272)	NA|335aa|down_3|NZ_CP046904.1_2461847_2462852_+	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|614aa|down_4|NZ_CP046904.1_2463228_2465070_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|553aa|down_5|NZ_CP046904.1_2465082_2466741_-	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed	NA|899aa|down_6|NZ_CP046904.1_2466762_2469459_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|91aa|down_7|NZ_CP046904.1_2469526_2469799_-	NA	NA|282aa|down_8|NZ_CP046904.1_2469839_2470685_+	PRK14189, PRK14189, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA|698aa|down_9|NZ_CP046904.1_2470707_2472801_+	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)
GCF_009789595.1_ASM978959v1	NZ_CP046904	Massilia flava strain DSM 26639 chromosome, complete genome	5	2740128-2740222	4	CRISPRCasFinder	no	RT	DEDDh,csa3,WYL,DinG,cas3,RT	Unclear	CCGTGTCCTGTCGGGGTCTGACCCCAGCGGGACAC	35	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|186aa|up_8|NZ_CP046904.1_2729604_2730162_+,NA|60aa|down_4|NZ_CP046904.1_2744098_2744278_-	NA|797aa|up_9|NZ_CP046904.1_2727044_2729435_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|186aa|up_8|NZ_CP046904.1_2729604_2730162_+	NA	NA|168aa|up_7|NZ_CP046904.1_2730170_2730674_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	RT|465aa|up_6|NZ_CP046904.1_2730712_2732107_-	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons	NA|199aa|up_5|NZ_CP046904.1_2732103_2732700_-	pfam18160, SLATT_5, SMODS and SLOG-associating 2TM effector domain family 5	NA|753aa|up_4|NZ_CP046904.1_2733267_2735526_-	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated	NA|599aa|up_3|NZ_CP046904.1_2735981_2737778_-	PRK05667, dnaG, DNA primase; Validated	NA|150aa|up_2|NZ_CP046904.1_2737868_2738318_-	pfam09424, YqeY, Yqey-like protein	NA|71aa|up_1|NZ_CP046904.1_2738500_2738713_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|403aa|up_0|NZ_CP046904.1_2738850_2740059_-	pfam03486, HI0933_like, HI0933-like protein	NA|323aa|down_0|NZ_CP046904.1_2740237_2741206_-	PRK08136, PRK08136, glycosyl transferase family protein; Provisional	NA|353aa|down_1|NZ_CP046904.1_2741289_2742348_+	PRK12755, PRK12755, phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional	NA|137aa|down_2|NZ_CP046904.1_2742360_2742771_-	cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain	NA|344aa|down_3|NZ_CP046904.1_2743066_2744098_+	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|60aa|down_4|NZ_CP046904.1_2744098_2744278_-	NA	NA|300aa|down_5|NZ_CP046904.1_2744365_2745265_-	cd08471, PBP2_CrgA_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|297aa|down_6|NZ_CP046904.1_2745270_2746161_-	pfam00520, Ion_trans, Ion transport protein	NA|409aa|down_7|NZ_CP046904.1_2746167_2747394_-	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase	NA|97aa|down_8|NZ_CP046904.1_2747412_2747703_-	pfam04248, NTP_transf_9, Domain of unknown function (DUF427)	NA|339aa|down_9|NZ_CP046904.1_2747714_2748731_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain
GCF_009789595.1_ASM978959v1	NZ_CP046904	Massilia flava strain DSM 26639 chromosome, complete genome	6	3140794-3140876	5	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	GGTGACACGAACTCGGCCGTTATG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA,NA	NA|457aa|up_9|NZ_CP046904.1_3127623_3128994_-	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|255aa|up_8|NZ_CP046904.1_3129101_3129866_-	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|133aa|up_7|NZ_CP046904.1_3130012_3130411_-	pfam15731, MqsA_antitoxin, Antitoxin component of bacterial toxin-antitoxin system, MqsA	NA|895aa|up_6|NZ_CP046904.1_3130507_3133192_-	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite	NA|402aa|up_5|NZ_CP046904.1_3133204_3134410_-	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]	NA|117aa|up_4|NZ_CP046904.1_3134420_3134771_-	pfam13806, Rieske_2, Rieske-like [2Fe-2S] domain	NA|843aa|up_3|NZ_CP046904.1_3134783_3137312_-	PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional	NA|442aa|up_2|NZ_CP046904.1_3137344_3138670_-	PLN00028, PLN00028, nitrate transmembrane transporter; Provisional	NA|378aa|up_1|NZ_CP046904.1_3138961_3140095_-	pfam13379, NMT1_2, NMT1-like family	NA|200aa|up_0|NZ_CP046904.1_3140128_3140728_-	COG3707, AmiR, Response regulator with putative antiterminator output domain [Signal transduction mechanisms]	NA|278aa|down_0|NZ_CP046904.1_3141740_3142574_-	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|332aa|down_1|NZ_CP046904.1_3142575_3143571_-	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|301aa|down_2|NZ_CP046904.1_3143581_3144484_-	COG2175, TauD, Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|204aa|down_3|NZ_CP046904.1_3144640_3145252_+	PRK09867, PRK09867, hypothetical protein; Provisional	NA|522aa|down_4|NZ_CP046904.1_3145238_3146804_-	TIGR03914, SPO1_DNA_polymerase-related_protein, uracil-DNA glycosylase family domain	NA|410aa|down_5|NZ_CP046904.1_3146800_3148030_-	TIGR03916, hypothetical_protein, putative DNA modification/repair radical SAM protein	NA|221aa|down_6|NZ_CP046904.1_3148139_3148802_-	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|372aa|down_7|NZ_CP046904.1_3149031_3150147_-	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|653aa|down_8|NZ_CP046904.1_3150391_3152350_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|187aa|down_9|NZ_CP046904.1_3152432_3152993_-	PRK14139, PRK14139, heat shock protein GrpE; Provisional
GCF_009789595.1_ASM978959v1	NZ_CP046904	Massilia flava strain DSM 26639 chromosome, complete genome	7	4983547-4983655	6	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	AGGGTCAGACCCGACGCGGGTCTGAC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|138aa|up_9|NZ_CP046904.1_4976482_4976896_+,NA|171aa|up_8|NZ_CP046904.1_4977073_4977586_+,NA|166aa|up_7|NZ_CP046904.1_4977587_4978085_+,NA	NA|138aa|up_9|NZ_CP046904.1_4976482_4976896_+	NA	NA|171aa|up_8|NZ_CP046904.1_4977073_4977586_+	NA	NA|166aa|up_7|NZ_CP046904.1_4977587_4978085_+	NA	NA|762aa|up_6|NZ_CP046904.1_4978099_4980385_+	COG4796, HofQ, Type II secretory pathway, component HofQ [Intracellular trafficking and secretion]	NA|164aa|up_5|NZ_CP046904.1_4980388_4980880_+	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|122aa|up_4|NZ_CP046904.1_4980897_4981263_+	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|198aa|up_3|NZ_CP046904.1_4981237_4981831_+	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|252aa|up_2|NZ_CP046904.1_4981760_4982516_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|197aa|up_1|NZ_CP046904.1_4982601_4983192_+	PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional	NA|102aa|up_0|NZ_CP046904.1_4983233_4983539_+	COG4654, COG4654, Cytochrome c551/c552 [Energy production and conversion]	NA|324aa|down_0|NZ_CP046904.1_4983662_4984634_-	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only]	NA|361aa|down_1|NZ_CP046904.1_4984630_4985713_-	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|509aa|down_2|NZ_CP046904.1_4985709_4987236_-	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]	NA|332aa|down_3|NZ_CP046904.1_4987318_4988314_-	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea	NA|750aa|down_4|NZ_CP046904.1_4988816_4991066_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|229aa|down_5|NZ_CP046904.1_4991399_4992086_+	pfam06149, DUF969, Protein of unknown function (DUF969)	NA|319aa|down_6|NZ_CP046904.1_4992082_4993039_+	pfam06166, DUF979, Protein of unknown function (DUF979)	NA|216aa|down_7|NZ_CP046904.1_4993047_4993695_+	PRK13197, PRK13197, pyrrolidone-carboxylate peptidase; Provisional	NA|301aa|down_8|NZ_CP046904.1_4993840_4994743_-	PRK09986, PRK09986, LysR family transcriptional regulator	NA|304aa|down_9|NZ_CP046904.1_4994756_4995668_-	pfam04227, Indigoidine_A, Indigoidine synthase A like protein
GCF_009789595.1_ASM978959v1	NZ_CP046904	Massilia flava strain DSM 26639 chromosome, complete genome	8	5371283-5371417	2	PILER-CR	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	ACGTCGCCCGGGCCGCTG	18	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|435aa|up_9|NZ_CP046904.1_5359726_5361031_-,NA|62aa|down_0|NZ_CP046904.1_5371990_5372176_+,NA|172aa|down_1|NZ_CP046904.1_5372157_5372673_+,NA|62aa|down_4|NZ_CP046904.1_5375027_5375213_+	NA|435aa|up_9|NZ_CP046904.1_5359726_5361031_-	NA	NA|340aa|up_8|NZ_CP046904.1_5361144_5362164_-	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|438aa|up_7|NZ_CP046904.1_5362163_5363477_-	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily	NA|268aa|up_6|NZ_CP046904.1_5363496_5364300_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|286aa|up_5|NZ_CP046904.1_5364311_5365169_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|458aa|up_4|NZ_CP046904.1_5365165_5366539_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|338aa|up_3|NZ_CP046904.1_5366545_5367559_-	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]	NA|376aa|up_2|NZ_CP046904.1_5367548_5368676_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|226aa|up_1|NZ_CP046904.1_5368672_5369350_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|296aa|up_0|NZ_CP046904.1_5369418_5370306_-	COG2971, COG2971, Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]	NA|62aa|down_0|NZ_CP046904.1_5371990_5372176_+	NA	NA|172aa|down_1|NZ_CP046904.1_5372157_5372673_+	NA	NA|518aa|down_2|NZ_CP046904.1_5372690_5374244_+	TIGR03015, pepcterm_ATPase, putative secretion ATPase, PEP-CTERM locus subfamily	NA|233aa|down_3|NZ_CP046904.1_5374245_5374944_+	pfam16537, T2SSB, Type II secretion system protein B	NA|62aa|down_4|NZ_CP046904.1_5375027_5375213_+	NA	NA|345aa|down_5|NZ_CP046904.1_5375216_5376251_-	COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]	NA|187aa|down_6|NZ_CP046904.1_5376380_5376941_+	pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis protein B	NA|66aa|down_7|NZ_CP046904.1_5376982_5377180_+	pfam14070, YjfB_motility, Putative motility protein	NA|87aa|down_8|NZ_CP046904.1_5377517_5377778_+	pfam10048, DUF2282, Predicted integral membrane protein (DUF2282)	NA|536aa|down_9|NZ_CP046904.1_5377835_5379443_+	pfam05114, DUF692, Protein of unknown function (DUF692)
GCF_009789595.1_ASM978959v1	NZ_CP046904	Massilia flava strain DSM 26639 chromosome, complete genome	9	5486268-5486356	7	CRISPRCasFinder	no	csa3	DEDDh,csa3,WYL,DinG,cas3,RT	Type I-A	GCTCGGCAGTCAAATGGATGAGTTCGTGT	29	1	5	5486297-5486327|5486297-5486327|5486297-5486327|5486297-5486327|5486297-5486327	NZ_CP046904.1_2243077-2243107|NZ_CP046904.1_2437023-2436993|NZ_CP046904.1_2501502-2501472|NZ_CP046904.1_3659982-3660012|NZ_CP046904.1_4491638-4491668	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA,NA|137aa|down_8|NZ_CP046904.1_5497267_5497678_+	NA|266aa|up_9|NZ_CP046904.1_5474970_5475768_-	cd05233, SDR_c, classical (c) SDRs	NA|400aa|up_8|NZ_CP046904.1_5475769_5476969_-	COG3970, COG3970, Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]	NA|454aa|up_7|NZ_CP046904.1_5477002_5478364_-	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|414aa|up_6|NZ_CP046904.1_5478631_5479873_+	cd01830, XynE_like, SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE	NA|519aa|up_5|NZ_CP046904.1_5479869_5481426_+	cd18617, GH43_XynB-like, Glycosyl hydrolase family 43, such as Bacteroides ovatus alpha-L-arabinofuranosidase (BoGH43, XynB)	NA|943aa|up_4|NZ_CP046904.1_5481444_5484273_+	pfam15979, Glyco_hydro_115, Glycosyl hydrolase family 115	NA|205aa|up_3|NZ_CP046904.1_5484265_5484880_-	pfam11159, DUF2939, Protein of unknown function (DUF2939)	csa3|109aa|up_2|NZ_CP046904.1_5485025_5485352_+	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|144aa|up_1|NZ_CP046904.1_5485348_5485780_+	COG2391, COG2391, Predicted transporter component [General function prediction only]	NA|137aa|up_0|NZ_CP046904.1_5485802_5486213_+	COG2391, COG2391, Predicted transporter component [General function prediction only]	NA|373aa|down_0|NZ_CP046904.1_5486395_5487514_-	pfam00331, Glyco_hydro_10, Glycosyl hydrolase family 10	NA|723aa|down_1|NZ_CP046904.1_5487615_5489784_+	COG3661, AguA, Alpha-glucuronidase [Carbohydrate transport and metabolism]	NA|377aa|down_2|NZ_CP046904.1_5489908_5491039_+	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators	NA|265aa|down_3|NZ_CP046904.1_5491302_5492097_-	PRK10559, PRK10559, p-hydroxybenzoic acid efflux pump subunit AaeA	NA|67aa|down_4|NZ_CP046904.1_5492228_5492429_-	pfam07869, DUF1656, Protein of unknown function (DUF1656)	NA|714aa|down_5|NZ_CP046904.1_5492418_5494560_-	pfam04632, FUSC, Fusaric acid resistance protein family	NA|165aa|down_6|NZ_CP046904.1_5494597_5495092_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|475aa|down_7|NZ_CP046904.1_5495162_5496587_-	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|137aa|down_8|NZ_CP046904.1_5497267_5497678_+	NA	NA|450aa|down_9|NZ_CP046904.1_5497749_5499099_-	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter
GCF_009789595.1_ASM978959v1	NZ_CP046904	Massilia flava strain DSM 26639 chromosome, complete genome	10	5737991-5738104	8	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	CAGCTCGTGTCCCGCTGGGGTCAGACCCCG	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|126aa|up_8|NZ_CP046904.1_5727446_5727824_-,NA|61aa|down_9|NZ_CP046904.1_5753204_5753387_+	NA|490aa|up_9|NZ_CP046904.1_5725976_5727446_-	PRK09302, PRK09302, circadian clock protein KaiC; Reviewed	NA|126aa|up_8|NZ_CP046904.1_5727446_5727824_-	NA	NA|480aa|up_7|NZ_CP046904.1_5728137_5729577_+	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS	NA|222aa|up_6|NZ_CP046904.1_5729573_5730239_+	PRK10710, PRK10710, DNA-binding transcriptional regulator BaeR; Provisional	NA|241aa|up_5|NZ_CP046904.1_5730269_5730992_+	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|592aa|up_4|NZ_CP046904.1_5731004_5732780_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|449aa|up_3|NZ_CP046904.1_5732789_5734136_+	pfam00034, Cytochrom_C, Cytochrome c	NA|531aa|up_2|NZ_CP046904.1_5734327_5735920_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|338aa|up_1|NZ_CP046904.1_5735926_5736940_-	cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|306aa|up_0|NZ_CP046904.1_5737056_5737974_+	cd08475, PBP2_CrgA_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|407aa|down_0|NZ_CP046904.1_5738203_5739424_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|801aa|down_1|NZ_CP046904.1_5739692_5742095_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|619aa|down_2|NZ_CP046904.1_5742249_5744106_+	cd17913, DEXQc_Suv3, DEXQ-box helicase domain of Suv3	NA|674aa|down_3|NZ_CP046904.1_5744102_5746124_-	pfam06097, DUF945, Bacterial protein of unknown function (DUF945)	NA|395aa|down_4|NZ_CP046904.1_5746260_5747445_+	COG2311, COG2311, Predicted membrane protein [Function unknown]	NA|199aa|down_5|NZ_CP046904.1_5747441_5748038_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|395aa|down_6|NZ_CP046904.1_5748095_5749280_-	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|191aa|down_7|NZ_CP046904.1_5749391_5749964_-	cd08547, Type_II_cohesin, Type II cohesin domain, interaction partner of dockerin	NA|995aa|down_8|NZ_CP046904.1_5750111_5753096_-	pfam13574, Reprolysin_2, Metallo-peptidase family M12B Reprolysin-like	NA|61aa|down_9|NZ_CP046904.1_5753204_5753387_+	NA
GCF_009789595.1_ASM978959v1	NZ_CP046904	Massilia flava strain DSM 26639 chromosome, complete genome	11	6509804-6509906	9	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	GTGCCAGGCACCAGGGACACAAGCTCATCA	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|162aa|up_7|NZ_CP046904.1_6502112_6502598_+,NA|272aa|up_6|NZ_CP046904.1_6502823_6503639_+,NA|232aa|up_2|NZ_CP046904.1_6506873_6507569_+,NA|234aa|down_2|NZ_CP046904.1_6513417_6514119_+,NA|77aa|down_3|NZ_CP046904.1_6514239_6514470_+	NA|119aa|up_9|NZ_CP046904.1_6498748_6499105_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|889aa|up_8|NZ_CP046904.1_6499279_6501946_+	PRK05972, ligD, ATP-dependent DNA ligase; Reviewed	NA|162aa|up_7|NZ_CP046904.1_6502112_6502598_+	NA	NA|272aa|up_6|NZ_CP046904.1_6502823_6503639_+	NA	NA|475aa|up_5|NZ_CP046904.1_6503726_6505151_-	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|146aa|up_4|NZ_CP046904.1_6505194_6505632_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|251aa|up_3|NZ_CP046904.1_6505868_6506621_+	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family	NA|232aa|up_2|NZ_CP046904.1_6506873_6507569_+	NA	NA|359aa|up_1|NZ_CP046904.1_6507580_6508657_-	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku	NA|333aa|up_0|NZ_CP046904.1_6508667_6509666_-	PRK06701, PRK06701, short chain dehydrogenase; Provisional	NA|552aa|down_0|NZ_CP046904.1_6509984_6511640_+	TIGR00815, Sulfate_transporter, high affinity sulphate transporter 1	NA|588aa|down_1|NZ_CP046904.1_6511636_6513400_+	COG4805, COG4805, Uncharacterized protein conserved in bacteria [Function unknown]	NA|234aa|down_2|NZ_CP046904.1_6513417_6514119_+	NA	NA|77aa|down_3|NZ_CP046904.1_6514239_6514470_+	NA	NA|285aa|down_4|NZ_CP046904.1_6514601_6515456_+	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]	NA|101aa|down_5|NZ_CP046904.1_6515465_6515768_+	PRK13241, ureA, urease subunit gamma; Provisional	NA|106aa|down_6|NZ_CP046904.1_6515797_6516115_+	PRK13203, ureB, urease subunit beta; Reviewed	NA|567aa|down_7|NZ_CP046904.1_6516135_6517836_+	PRK13207, ureC, urease subunit alpha; Reviewed	NA|172aa|down_8|NZ_CP046904.1_6517838_6518354_+	PRK13263, ureE, urease accessory protein UreE; Provisional	NA|230aa|down_9|NZ_CP046904.1_6518353_6519043_+	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]
GCF_009789595.1_ASM978959v1	NZ_CP046904	Massilia flava strain DSM 26639 chromosome, complete genome	12	6797313-6797388	10	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	AAAACAACACCAGGGACAGTCCC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA,NA|227aa|down_7|NZ_CP046904.1_6805055_6805736_-,NA|257aa|down_8|NZ_CP046904.1_6805735_6806506_-	NA|749aa|up_9|NZ_CP046904.1_6779622_6781869_+	PRK11186, PRK11186, carboxy terminal-processing peptidase	NA|1038aa|up_8|NZ_CP046904.1_6782140_6785254_-	pfam07940, Hepar_II_III, Heparinase II/III-like protein	NA|165aa|up_7|NZ_CP046904.1_6785495_6785990_+	PRK11433, PRK11433, aldehyde oxidoreductase 2Fe-2S subunit; Provisional	NA|337aa|up_6|NZ_CP046904.1_6785986_6786997_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|723aa|up_5|NZ_CP046904.1_6786993_6789162_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|545aa|up_4|NZ_CP046904.1_6789218_6790853_-	cd08154, catalase_clade_1, Clade 1 of the heme-binding enzyme catalase	NA|738aa|up_3|NZ_CP046904.1_6790986_6793200_+	cd14953, NHL_like_1, Uncharacterized NHL-repeat domain in bacterial proteins	NA|289aa|up_2|NZ_CP046904.1_6793206_6794073_-	pfam10988, DUF2807, Putative auto-transporter adhesin, head GIN domain	NA|314aa|up_1|NZ_CP046904.1_6794211_6795153_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|615aa|up_0|NZ_CP046904.1_6795229_6797074_-	cd10318, RGL11, Rhamnogalacturonan lyase of the polysaccharide lyase family 11	NA|323aa|down_0|NZ_CP046904.1_6797423_6798392_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|307aa|down_1|NZ_CP046904.1_6798548_6799469_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|330aa|down_2|NZ_CP046904.1_6799485_6800475_+	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|397aa|down_3|NZ_CP046904.1_6800543_6801734_+	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit	NA|377aa|down_4|NZ_CP046904.1_6801743_6802874_+	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit	NA|379aa|down_5|NZ_CP046904.1_6803010_6804147_+	pfam00665, rve, Integrase core domain	NA|189aa|down_6|NZ_CP046904.1_6804417_6804984_-	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|227aa|down_7|NZ_CP046904.1_6805055_6805736_-	NA	NA|257aa|down_8|NZ_CP046904.1_6805735_6806506_-	NA	NA|238aa|down_9|NZ_CP046904.1_6806502_6807216_-	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G
GCF_009789595.1_ASM978959v1	NZ_CP046904	Massilia flava strain DSM 26639 chromosome, complete genome	13	6838685-6838773	11	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	TGGGGTCAGACCCCGACGGGACAC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|116aa|up_7|NZ_CP046904.1_6831230_6831578_+,NA|64aa|down_3|NZ_CP046904.1_6841885_6842077_-	NA|236aa|up_9|NZ_CP046904.1_6829729_6830437_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|264aa|up_8|NZ_CP046904.1_6830433_6831225_+	pfam04612, T2SSM, Type II secretion system (T2SS), protein M	NA|116aa|up_7|NZ_CP046904.1_6831230_6831578_+	NA	NA|590aa|up_6|NZ_CP046904.1_6831595_6833365_+	TIGR02519, related_to_type_II_protein_secretion_protein, pilus (MSHA type) biogenesis protein MshL	NA|298aa|up_5|NZ_CP046904.1_6833364_6834258_+	TIGR03015, pepcterm_ATPase, putative secretion ATPase, PEP-CTERM locus subfamily	NA|349aa|up_4|NZ_CP046904.1_6834254_6835301_+	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	NA|279aa|up_3|NZ_CP046904.1_6835322_6836159_-	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|396aa|up_2|NZ_CP046904.1_6836159_6837347_-	PRK09082, PRK09082, methionine aminotransferase; Validated	NA|161aa|up_1|NZ_CP046904.1_6837372_6837855_-	pfam13470, PIN_3, PIN domain	NA|256aa|up_0|NZ_CP046904.1_6837893_6838661_+	PRK02101, PRK02101, peroxide stress protein YaaA	NA|268aa|down_0|NZ_CP046904.1_6839132_6839936_-	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO	NA|387aa|down_1|NZ_CP046904.1_6839934_6841095_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|264aa|down_2|NZ_CP046904.1_6841091_6841883_+	PRK10723, PRK10723, polyphenol oxidase	NA|64aa|down_3|NZ_CP046904.1_6841885_6842077_-	NA	NA|588aa|down_4|NZ_CP046904.1_6842124_6843888_+	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I	NA|187aa|down_5|NZ_CP046904.1_6844116_6844677_+	COG5394, COG5394, Uncharacterized protein conserved in bacteria [Function unknown]	NA|303aa|down_6|NZ_CP046904.1_6844681_6845590_-	cd08461, PBP2_DntR_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold	NA|259aa|down_7|NZ_CP046904.1_6845675_6846452_+	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]	NA|441aa|down_8|NZ_CP046904.1_6846888_6848211_+	TIGR03356, BGL, beta-galactosidase	NA|426aa|down_9|NZ_CP046904.1_6848292_6849570_+	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
