assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009789575.1_ASM978957v1	NZ_CP046908	Stappia indica strain PHM037 chromosome, complete genome	1	269179-269287	1	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas2,cas1,cas4,cas7b,cas8c,cas5,RT	Orphan	GCGACAAACACCTGCCGACGGCGCC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,cas2,cas1,cas4,cas7b,cas8c,cas5,RT	NA|97aa|up_6|NZ_CP046908.1_262722_263013_+,NA|127aa|up_5|NZ_CP046908.1_263503_263884_+,NA|117aa|up_4|NZ_CP046908.1_263963_264314_+,NA|53aa|up_3|NZ_CP046908.1_264624_264783_+,NA|68aa|down_8|NZ_CP046908.1_282755_282959_+	NA|238aa|up_9|NZ_CP046908.1_260389_261103_+	PRK12742, PRK12742, SDR family oxidoreductase	NA|187aa|up_8|NZ_CP046908.1_261183_261744_-	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins	NA|168aa|up_7|NZ_CP046908.1_262037_262541_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|97aa|up_6|NZ_CP046908.1_262722_263013_+	NA	NA|127aa|up_5|NZ_CP046908.1_263503_263884_+	NA	NA|117aa|up_4|NZ_CP046908.1_263963_264314_+	NA	NA|53aa|up_3|NZ_CP046908.1_264624_264783_+	NA	NA|186aa|up_2|NZ_CP046908.1_264794_265352_+	pfam02600, DsbB, Disulfide bond formation protein DsbB	NA|215aa|up_1|NZ_CP046908.1_265369_266014_-	pfam01914, MarC, MarC family integral membrane protein	NA|947aa|up_0|NZ_CP046908.1_266234_269075_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|428aa|down_0|NZ_CP046908.1_269600_270884_-	cd07302, CHD, cyclase homology domain	NA|696aa|down_1|NZ_CP046908.1_271147_273235_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|278aa|down_2|NZ_CP046908.1_273248_274082_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|317aa|down_3|NZ_CP046908.1_274286_275237_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|555aa|down_4|NZ_CP046908.1_275358_277023_-	cd08503, PBP2_NikA_DppA_OppA_like_17, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|530aa|down_5|NZ_CP046908.1_277585_279175_+	pfam06253, MTTB, Trimethylamine methyltransferase (MTTB)	NA|812aa|down_6|NZ_CP046908.1_279234_281670_+	COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]	NA|299aa|down_7|NZ_CP046908.1_281687_282584_-	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional	NA|68aa|down_8|NZ_CP046908.1_282755_282959_+	NA	NA|436aa|down_9|NZ_CP046908.1_283072_284380_-	PRK05474, PRK05474, xylose isomerase; Provisional
GCF_009789575.1_ASM978957v1	NZ_CP046908	Stappia indica strain PHM037 chromosome, complete genome	2	1565127-1565453	1	CRT	no		csa3,cas3,WYL,DEDDh,cas2,cas1,cas4,cas7b,cas8c,cas5,RT	Orphan	GNNNCGGCGGCGNNNGCG	18	0	0	NA	NA	NA	5	5	Orphan	csa3,cas3,WYL,DEDDh,cas2,cas1,cas4,cas7b,cas8c,cas5,RT	NA|93aa|up_8|NZ_CP046908.1_1557180_1557459_+,NA|71aa|up_7|NZ_CP046908.1_1557458_1557671_+,NA|53aa|up_5|NZ_CP046908.1_1558513_1558672_+,NA|85aa|down_5|NZ_CP046908.1_1569673_1569928_-	NA|376aa|up_9|NZ_CP046908.1_1555797_1556925_-	TIGR02040, transcriptional_regulator_AerR_aerR, transcriptional regulator PpsR	NA|93aa|up_8|NZ_CP046908.1_1557180_1557459_+	NA	NA|71aa|up_7|NZ_CP046908.1_1557458_1557671_+	NA	NA|138aa|up_6|NZ_CP046908.1_1557967_1558381_+	pfam12616, DUF3775, Protein of unknown function (DUF3775)	NA|53aa|up_5|NZ_CP046908.1_1558513_1558672_+	NA	NA|317aa|up_4|NZ_CP046908.1_1558730_1559681_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|294aa|up_3|NZ_CP046908.1_1559790_1560672_+	pfam07786, DUF1624, Protein of unknown function (DUF1624)	NA|382aa|up_2|NZ_CP046908.1_1560852_1561998_+	PRK09585, anmK, anhydro-N-acetylmuramic acid kinase; Reviewed	NA|313aa|up_1|NZ_CP046908.1_1562665_1563604_+	pfam07182, DUF1402, Protein of unknown function (DUF1402)	NA|220aa|up_0|NZ_CP046908.1_1563684_1564344_-	cd07737, YcbL-like_MBL-fold, Salmonella enterica serovar typhimurium YcbL and related proteins; MBL-fold metallo hydrolase domain	NA|174aa|down_0|NZ_CP046908.1_1565973_1566495_+	COG3818, COG3818, Predicted acetyltransferase, GNAT superfamily [General function prediction only]	NA|284aa|down_1|NZ_CP046908.1_1566491_1567343_+	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only]	NA|149aa|down_2|NZ_CP046908.1_1567450_1567897_+	pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 81	NA|231aa|down_3|NZ_CP046908.1_1567923_1568616_+	cd01062, RNase_T2_prok, Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far	NA|330aa|down_4|NZ_CP046908.1_1568671_1569661_+	pfam06674, DUF1176, Protein of unknown function (DUF1176)	NA|85aa|down_5|NZ_CP046908.1_1569673_1569928_-	NA	NA|205aa|down_6|NZ_CP046908.1_1570241_1570856_+	cd03205, GST_C_6, C-terminal, alpha helical domain of an unknown subfamily 6 of Glutathione S-transferases	NA|275aa|down_7|NZ_CP046908.1_1570865_1571690_-	COG3221, PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|224aa|down_8|NZ_CP046908.1_1571847_1572519_-	COG3637, COG3637, Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane]	NA|332aa|down_9|NZ_CP046908.1_1572906_1573902_+	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]
GCF_009789575.1_ASM978957v1	NZ_CP046908	Stappia indica strain PHM037 chromosome, complete genome	3	1943180-1943541	1,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7b,cas8c,cas5,cas3	csa3,cas3,WYL,DEDDh,cas2,cas1,cas4,cas7b,cas8c,cas5,RT	 Type I-U?,Type I-C,Type I-U	GTTTCGATCCGCGCCCCCGCGAGGGGGGCG---------AC,GTTTCGATCCGCGCCCCCGCGAGGGGGGCGAC,GTTTCGATCCGCGCCCCCGCGAGGGGGGCGAC	41,32,32	0	0	NA	NA	NA:NA:NA	5,5,5	5	TypeI-U,TypeI-U?,TypeI-C	csa3,cas3,WYL,DEDDh,cas2,cas1,cas4,cas7b,cas8c,cas5,RT	NA,NA	NA|311aa|up_9|NZ_CP046908.1_1929673_1930606_+	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold	NA|152aa|up_8|NZ_CP046908.1_1930614_1931070_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|75aa|up_7|NZ_CP046908.1_1931204_1931429_-	pfam11390, FdsD, NADH-dependant formate dehydrogenase delta subunit FdsD	NA|272aa|up_6|NZ_CP046908.1_1931418_1932234_-	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|957aa|up_5|NZ_CP046908.1_1932238_1935109_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|524aa|up_4|NZ_CP046908.1_1935113_1936685_-	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]	NA|160aa|up_3|NZ_CP046908.1_1936681_1937161_-	PRK05988, PRK05988, formate dehydrogenase subunit gamma; Validated	NA|582aa|up_2|NZ_CP046908.1_1937437_1939183_-	cd17353, MFS_OFA_like, Oxalate:formate antiporter (OFA) and similar proteins of the Major Facilitator Superfamily of transporters	NA|695aa|up_1|NZ_CP046908.1_1939527_1941612_-	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|468aa|up_0|NZ_CP046908.1_1941604_1943008_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	cas2|97aa|down_0|NZ_CP046908.1_1943725_1944016_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|345aa|down_1|NZ_CP046908.1_1944025_1945060_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|215aa|down_2|NZ_CP046908.1_1945056_1945701_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7b|318aa|down_3|NZ_CP046908.1_1945739_1946693_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|604aa|down_4|NZ_CP046908.1_1946689_1948501_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|222aa|down_5|NZ_CP046908.1_1948497_1949163_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|756aa|down_6|NZ_CP046908.1_1949295_1951563_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|566aa|down_7|NZ_CP046908.1_1951761_1953459_-	PRK14479, PRK14479, dihydroxyacetone kinase; Provisional	NA|297aa|down_8|NZ_CP046908.1_1953746_1954637_-	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|479aa|down_9|NZ_CP046908.1_1954675_1956112_-	cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like
GCF_009789575.1_ASM978957v1	NZ_CP046908	Stappia indica strain PHM037 chromosome, complete genome	4	4347189-4348018	2,3,3,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no		csa3,cas3,WYL,DEDDh,cas2,cas1,cas4,cas7b,cas8c,cas5,RT	Orphan	GTCGCCCCCTTCGCGGGGGCGCGGATCGAAAC,GTCGCCCCCTTCGCGGGGGCGCGGATCGAAAC,GTCGCCCCCTTCGCGGGGGCGCGGATCGAAACN,CATCGTCGCCCCCTTCGCGGGGGCGCGGATCGAAAC	32,32,33,36	0	0	NA	NA	NA:NA:NA:NA	11,12,12,11	12	Orphan	csa3,cas3,WYL,DEDDh,cas2,cas1,cas4,cas7b,cas8c,cas5,RT	NA,NA	NA|307aa|up_9|NZ_CP046908.1_4334869_4335790_-	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|349aa|up_8|NZ_CP046908.1_4335958_4337005_+	pfam14336, DUF4392, Domain of unknown function (DUF4392)	NA|361aa|up_7|NZ_CP046908.1_4337076_4338159_+	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|184aa|up_6|NZ_CP046908.1_4338164_4338716_+	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|427aa|up_5|NZ_CP046908.1_4338717_4339998_+	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|272aa|up_4|NZ_CP046908.1_4340355_4341171_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|316aa|up_3|NZ_CP046908.1_4341215_4342163_+	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	NA|644aa|up_2|NZ_CP046908.1_4342225_4344157_+	TIGR02123, conserved_inner_membrane_protein, TRAP transporter, 4TM/12TM fusion protein	NA|308aa|up_1|NZ_CP046908.1_4344179_4345103_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|562aa|up_0|NZ_CP046908.1_4345178_4346864_+	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	NA|241aa|down_0|NZ_CP046908.1_4348084_4348807_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|284aa|down_1|NZ_CP046908.1_4349131_4349983_+	cd01002, PBP2_Ehub_like, Substrate binding domain of ectoine/hydroxyectoine specific ABC transport system; the type 2 periplasmic binding protein fold	NA|222aa|down_2|NZ_CP046908.1_4350109_4350775_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|223aa|down_3|NZ_CP046908.1_4350778_4351447_+	TIGR03003, ectoine_ehuD, ectoine/hydroxyectoine ABC transporter, permease protein EhuD	NA|274aa|down_4|NZ_CP046908.1_4351446_4352268_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|332aa|down_5|NZ_CP046908.1_4352264_4353260_+	PRK07476, eutB, threonine dehydratase; Provisional	NA|331aa|down_6|NZ_CP046908.1_4353249_4354242_+	PRK08291, PRK08291, cyclodeaminase	NA|361aa|down_7|NZ_CP046908.1_4354335_4355418_-	cd13518, PBP2_Fe3_thiamine_like, Substrate binding domain of iron and thiamine transporters-like, a member of the type 2 periplasmic binding fold superfamily	NA|252aa|down_8|NZ_CP046908.1_4355737_4356493_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|129aa|down_9|NZ_CP046908.1_4356668_4357055_-	pfam12893, Lumazine_bd_2, Putative lumazine-binding
