assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009769165.1_ASM976916v1	NZ_CP043476	Xanthomonas hyacinthi strain CFBP 1156 chromosome, complete genome	1	198030-201023	1,1,2	CRISPRCasFinder,CRT,CRT	no		DEDDh,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas6f,cas7f,cas5f,cas8f,cas3f,DinG,csa3,Cas9_archaeal	Orphan	GTGCTGCCGTAGCCGGCGGTCAG,CCNGCGGTNNNNGTGCTGCCGTAGCCGGCG,GTGCTGCCNTAGCCGGCG	23,30,18	1	1	200088-200105	NZ_CP043476.1_201048-201065	NA:NA:NA	21,53,53	53	Orphan	DEDDh,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas6f,cas7f,cas5f,cas8f,cas3f,DinG,csa3,Cas9_archaeal	NA,NA|83aa|down_0|NZ_CP043476.1_202514_202763_-,NA|198aa|down_4|NZ_CP043476.1_208081_208675_+,NA|118aa|down_6|NZ_CP043476.1_210323_210677_-	NA|405aa|up_9|NZ_CP043476.1_182759_183974_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|360aa|up_8|NZ_CP043476.1_184191_185271_+	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|377aa|up_7|NZ_CP043476.1_185848_186979_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|375aa|up_6|NZ_CP043476.1_187133_188258_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|455aa|up_5|NZ_CP043476.1_188356_189721_-	PRK07480, PRK07480, putative aminotransferase; Validated	NA|461aa|up_4|NZ_CP043476.1_190579_191962_-	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|252aa|up_3|NZ_CP043476.1_191973_192729_-	pfam07722, Peptidase_C26, Peptidase C26	NA|460aa|up_2|NZ_CP043476.1_192987_194367_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|435aa|up_1|NZ_CP043476.1_194467_195772_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|427aa|up_0|NZ_CP043476.1_195888_197169_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|83aa|down_0|NZ_CP043476.1_202514_202763_-	NA	NA|783aa|down_1|NZ_CP043476.1_202752_205101_-	TIGR01701, Hypothetical_protein_Rv2900c/MT2968/Mb2924c	NA|280aa|down_2|NZ_CP043476.1_205097_205937_-	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|561aa|down_3|NZ_CP043476.1_205956_207639_-	cd17353, MFS_OFA_like, Oxalate:formate antiporter (OFA) and similar proteins of the Major Facilitator Superfamily of transporters	NA|198aa|down_4|NZ_CP043476.1_208081_208675_+	NA	NA|447aa|down_5|NZ_CP043476.1_208945_210286_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|118aa|down_6|NZ_CP043476.1_210323_210677_-	NA	NA|231aa|down_7|NZ_CP043476.1_210673_211366_-	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain	NA|335aa|down_8|NZ_CP043476.1_211395_212400_-	pfam13369, Transglut_core2, Transglutaminase-like superfamily	NA|501aa|down_9|NZ_CP043476.1_212809_214312_-	cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like
GCF_009769165.1_ASM976916v1	NZ_CP043476	Xanthomonas hyacinthi strain CFBP 1156 chromosome, complete genome	2	848703-848774	2	CRISPRCasFinder	no		DEDDh,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas6f,cas7f,cas5f,cas8f,cas3f,DinG,csa3,Cas9_archaeal	Orphan	CGGGCTGTTGCGAGGGACTCGCC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas6f,cas7f,cas5f,cas8f,cas3f,DinG,csa3,Cas9_archaeal	NA|84aa|up_9|NZ_CP043476.1_840299_840551_+,NA|209aa|down_6|NZ_CP043476.1_856376_857003_+	NA|84aa|up_9|NZ_CP043476.1_840299_840551_+	NA	NA|233aa|up_8|NZ_CP043476.1_840725_841424_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|143aa|up_7|NZ_CP043476.1_841427_841856_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|186aa|up_6|NZ_CP043476.1_842056_842614_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|138aa|up_5|NZ_CP043476.1_842627_843041_-	PRK05740, secE, preprotein translocase subunit SecE; Reviewed	NA|397aa|up_4|NZ_CP043476.1_843301_844492_-	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|364aa|up_3|NZ_CP043476.1_845002_846094_-	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|194aa|up_2|NZ_CP043476.1_846174_846756_-	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|216aa|up_1|NZ_CP043476.1_846810_847458_-	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|320aa|up_0|NZ_CP043476.1_847628_848588_-	PRK04923, PRK04923, ribose-phosphate diphosphokinase	NA|288aa|down_0|NZ_CP043476.1_848869_849733_-	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	NA|218aa|down_1|NZ_CP043476.1_849729_850383_-	PRK00022, lolB, lipoprotein localization protein LolB	NA|566aa|down_2|NZ_CP043476.1_850379_852077_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|428aa|down_3|NZ_CP043476.1_852143_853427_+	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	NA|362aa|down_4|NZ_CP043476.1_853404_854490_+	PRK00591, prfA, peptide chain release factor 1; Validated	NA|570aa|down_5|NZ_CP043476.1_854545_856255_+	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]	NA|209aa|down_6|NZ_CP043476.1_856376_857003_+	NA	NA|173aa|down_7|NZ_CP043476.1_857167_857686_+	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B	NA|113aa|down_8|NZ_CP043476.1_857699_858038_+	PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional	NA|259aa|down_9|NZ_CP043476.1_858034_858811_+	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family
GCF_009769165.1_ASM976916v1	NZ_CP043476	Xanthomonas hyacinthi strain CFBP 1156 chromosome, complete genome	3	1090216-1090339	3	CRISPRCasFinder	no		DEDDh,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas6f,cas7f,cas5f,cas8f,cas3f,DinG,csa3,Cas9_archaeal	Orphan	GCTTCATCTGCCGGCAGGCGCAAGCGTCTGCCATCGGCGCCGGC	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas6f,cas7f,cas5f,cas8f,cas3f,DinG,csa3,Cas9_archaeal	NA,NA	NA|302aa|up_9|NZ_CP043476.1_1079625_1080531_+	cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII	NA|782aa|up_8|NZ_CP043476.1_1080640_1082986_+	PRK04423, PRK04423, LPS-assembly protein LptD	NA|460aa|up_7|NZ_CP043476.1_1082982_1084362_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|326aa|up_6|NZ_CP043476.1_1084366_1085344_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|265aa|up_5|NZ_CP043476.1_1085387_1086182_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|128aa|up_4|NZ_CP043476.1_1086374_1086758_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|309aa|up_3|NZ_CP043476.1_1086768_1087695_+	PRK00166, apaH, symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA|167aa|up_2|NZ_CP043476.1_1087854_1088355_-	pfam00186, DHFR_1, Dihydrofolate reductase	NA|265aa|up_1|NZ_CP043476.1_1088453_1089248_-	PRK01827, thyA, thymidylate synthase; Reviewed	NA|294aa|up_0|NZ_CP043476.1_1089244_1090126_-	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed	NA|164aa|down_0|NZ_CP043476.1_1090372_1090864_-	COG3762, COG3762, Predicted membrane protein [Function unknown]	NA|314aa|down_1|NZ_CP043476.1_1090863_1091805_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|210aa|down_2|NZ_CP043476.1_1091900_1092530_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|250aa|down_3|NZ_CP043476.1_1092606_1093356_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|127aa|down_4|NZ_CP043476.1_1093396_1093777_-	cd14264, DAGK_IM, Integral membrane diacylglycerol kinase	NA|236aa|down_5|NZ_CP043476.1_1093979_1094687_+	cd04502, SGNH_hydrolase_like_7, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases	NA|427aa|down_6|NZ_CP043476.1_1094732_1096013_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|238aa|down_7|NZ_CP043476.1_1096124_1096838_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|222aa|down_8|NZ_CP043476.1_1096930_1097596_-	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases	NA|201aa|down_9|NZ_CP043476.1_1097721_1098324_+	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_009769165.1_ASM976916v1	NZ_CP043476	Xanthomonas hyacinthi strain CFBP 1156 chromosome, complete genome	4	1479436-1481882	1,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	DEDDh,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas6f,cas7f,cas5f,cas8f,cas3f,DinG,csa3,Cas9_archaeal	 Type I-U?,Type I-U,Type I-C	GTCGCGTCCTCACGGGCGCGTGGATTGAAAC,GTCGCGTCCTCACGGGCGCGTGGATTGAAAC,GTCGCGTCCTCACGGGCGCGTGGATTGAAAC	31,31,31	0	0	NA	NA	I-C:I-C:I-C	36,37,37	37	TypeI-U,TypeI-U?,TypeI-C	DEDDh,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas6f,cas7f,cas5f,cas8f,cas3f,DinG,csa3,Cas9_archaeal	NA|71aa|up_8|NZ_CP043476.1_1467883_1468096_+,NA|194aa|down_7|NZ_CP043476.1_1494011_1494593_+,NA|181aa|down_9|NZ_CP043476.1_1496337_1496880_-	NA|311aa|up_9|NZ_CP043476.1_1466855_1467788_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|71aa|up_8|NZ_CP043476.1_1467883_1468096_+	NA	NA|745aa|up_7|NZ_CP043476.1_1468330_1470565_-	pfam03971, IDH, Monomeric isocitrate dehydrogenase	cas3|765aa|up_6|NZ_CP043476.1_1471214_1473509_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|225aa|up_5|NZ_CP043476.1_1473881_1474556_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|611aa|up_4|NZ_CP043476.1_1474552_1476385_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|289aa|up_3|NZ_CP043476.1_1476381_1477248_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|211aa|up_2|NZ_CP043476.1_1477269_1477902_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|345aa|up_1|NZ_CP043476.1_1477904_1478939_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NZ_CP043476.1_1478954_1479245_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|173aa|down_0|NZ_CP043476.1_1482074_1482593_-	COG4314, NosL, Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]	NA|98aa|down_1|NZ_CP043476.1_1482651_1482945_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|273aa|down_2|NZ_CP043476.1_1483050_1483869_-	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional	NA|437aa|down_3|NZ_CP043476.1_1484067_1485378_-	cd05667, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|413aa|down_4|NZ_CP043476.1_1485664_1486903_+	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA|1081aa|down_5|NZ_CP043476.1_1487053_1490296_+	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA|1044aa|down_6|NZ_CP043476.1_1490444_1493576_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|194aa|down_7|NZ_CP043476.1_1494011_1494593_+	NA	NA|454aa|down_8|NZ_CP043476.1_1494773_1496135_-	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ	NA|181aa|down_9|NZ_CP043476.1_1496337_1496880_-	NA
GCF_009769165.1_ASM976916v1	NZ_CP043476	Xanthomonas hyacinthi strain CFBP 1156 chromosome, complete genome	5	1563502-1563849	4	CRT	no		DEDDh,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas6f,cas7f,cas5f,cas8f,cas3f,DinG,csa3,Cas9_archaeal	Orphan	ACGGTCAACGGCGGCATC	18	0	0	NA	NA	NA	6	6	Orphan	DEDDh,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas6f,cas7f,cas5f,cas8f,cas3f,DinG,csa3,Cas9_archaeal	NA,NA	NA|197aa|up_9|NZ_CP043476.1_1549931_1550522_-	PRK05089, PRK05089, cytochrome C oxidase assembly protein; Provisional	NA|537aa|up_8|NZ_CP043476.1_1550649_1552260_-	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I	NA|329aa|up_7|NZ_CP043476.1_1552290_1553277_-	cd13912, CcO_II_C, C-terminal domain of Cytochrome c Oxidase subunit II	NA|159aa|up_6|NZ_CP043476.1_1553297_1553774_-	pfam10003, DUF2244, Integral membrane protein (DUF2244)	NA|1074aa|up_5|NZ_CP043476.1_1553985_1557207_+	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA|446aa|up_4|NZ_CP043476.1_1557528_1558866_-	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX)	NA|231aa|up_3|NZ_CP043476.1_1559101_1559794_+	pfam01694, Rhomboid, Rhomboid family	NA|107aa|up_2|NZ_CP043476.1_1559834_1560155_+	pfam08850, DUF1820, Domain of unknown function (DUF1820)	NA|501aa|up_1|NZ_CP043476.1_1560399_1561902_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|408aa|up_0|NZ_CP043476.1_1562008_1563232_-	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|575aa|down_0|NZ_CP043476.1_1564168_1565893_+	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert	NA|356aa|down_1|NZ_CP043476.1_1566287_1567355_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|394aa|down_2|NZ_CP043476.1_1573758_1574940_+	pfam03594, BenE, Benzoate membrane transport protein	NA|426aa|down_3|NZ_CP043476.1_1576865_1578143_-	cd17388, MFS_TetA, Tetracycline resistance protein TetA and related proteins of the Major Facilitator Superfamily of transporters	NA|744aa|down_4|NZ_CP043476.1_1578530_1580762_-	pfam13406, SLT_2, Transglycosylase SLT domain	NA|570aa|down_5|NZ_CP043476.1_1581021_1582731_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|131aa|down_6|NZ_CP043476.1_1582810_1583203_-	PRK04233, PRK04233, hypothetical protein; Provisional	NA|258aa|down_7|NZ_CP043476.1_1583301_1584075_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|387aa|down_8|NZ_CP043476.1_1584094_1585255_-	pfam09983, DUF2220, Uncharacterized protein conserved in bacteria C-term(DUF2220)	NA|1177aa|down_9|NZ_CP043476.1_1585278_1588809_-	COG4913, COG4913, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_009769165.1_ASM976916v1	NZ_CP043476	Xanthomonas hyacinthi strain CFBP 1156 chromosome, complete genome	6	1673374-1673631	5	CRT	no		DEDDh,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas6f,cas7f,cas5f,cas8f,cas3f,DinG,csa3,Cas9_archaeal	Orphan	TTCTGCCGTTGCTTCTGC	18	0	0	NA	NA	NA	5	5	Orphan	DEDDh,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas6f,cas7f,cas5f,cas8f,cas3f,DinG,csa3,Cas9_archaeal	NA|50aa|up_7|NZ_CP043476.1_1667458_1667608_-,NA|144aa|down_3|NZ_CP043476.1_1678162_1678594_+	NA|265aa|up_9|NZ_CP043476.1_1665441_1666236_-	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC	NA|348aa|up_8|NZ_CP043476.1_1666395_1667439_-	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|50aa|up_7|NZ_CP043476.1_1667458_1667608_-	NA	NA|193aa|up_6|NZ_CP043476.1_1667610_1668189_-	PRK05670, PRK05670, anthranilate synthase component II; Provisional	NA|264aa|up_5|NZ_CP043476.1_1668950_1669742_+	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|250aa|up_4|NZ_CP043476.1_1669741_1670491_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|185aa|up_3|NZ_CP043476.1_1670590_1671145_+	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD	NA|221aa|up_2|NZ_CP043476.1_1671141_1671804_+	pfam05494, MlaC, MlaC protein	NA|105aa|up_1|NZ_CP043476.1_1671793_1672108_+	COG3113, COG3113, Predicted NTP binding protein (contains STAS domain) [General function prediction only]	NA|356aa|up_0|NZ_CP043476.1_1672111_1673179_+	pfam04333, MlaA, MlaA lipoprotein	NA|181aa|down_0|NZ_CP043476.1_1674611_1675154_-	PRK10606, btuE, putative glutathione peroxidase; Provisional	NA|533aa|down_1|NZ_CP043476.1_1675308_1676907_-	COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]	NA|208aa|down_2|NZ_CP043476.1_1677067_1677691_+	cd03180, GST_C_2, C-terminal, alpha helical domain of an unknown subfamily 2 of Glutathione S-transferases	NA|144aa|down_3|NZ_CP043476.1_1678162_1678594_+	NA	NA|243aa|down_4|NZ_CP043476.1_1678593_1679322_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|358aa|down_5|NZ_CP043476.1_1679365_1680439_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|204aa|down_6|NZ_CP043476.1_1680447_1681059_+	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|475aa|down_7|NZ_CP043476.1_1681208_1682633_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|404aa|down_8|NZ_CP043476.1_1682994_1684206_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|135aa|down_9|NZ_CP043476.1_1684354_1684759_-	pfam10947, DUF2628, Protein of unknown function (DUF2628)
GCF_009769165.1_ASM976916v1	NZ_CP043476	Xanthomonas hyacinthi strain CFBP 1156 chromosome, complete genome	7	1825101-1825196	5	CRISPRCasFinder	no		DEDDh,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas6f,cas7f,cas5f,cas8f,cas3f,DinG,csa3,Cas9_archaeal	Orphan	TGCACGAGGCTGCGCCCTACCCTCATCCGGCG	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas6f,cas7f,cas5f,cas8f,cas3f,DinG,csa3,Cas9_archaeal	NA,NA|167aa|down_9|NZ_CP043476.1_1836462_1836963_+	NA|781aa|up_9|NZ_CP043476.1_1812751_1815094_-	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e	NA|157aa|up_8|NZ_CP043476.1_1815109_1815580_-	PRK00601, dut, dUTP diphosphatase	NA|409aa|up_7|NZ_CP043476.1_1815576_1816803_-	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|225aa|up_6|NZ_CP043476.1_1816939_1817614_+	PRK00024, PRK00024, DNA repair protein RadC	NA|563aa|up_5|NZ_CP043476.1_1817796_1819485_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|276aa|up_4|NZ_CP043476.1_1819500_1820328_+	COG3087, FtsN, Cell division protein [Cell division and chromosome partitioning]	NA|252aa|up_3|NZ_CP043476.1_1820537_1821293_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|167aa|up_2|NZ_CP043476.1_1821368_1821869_-	pfam16157, DUF4865, Domain of unknown function (DUF4865)	NA|373aa|up_1|NZ_CP043476.1_1821753_1822872_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|630aa|up_0|NZ_CP043476.1_1823107_1824997_-	PRK05354, PRK05354, biosynthetic arginine decarboxylase	NA|284aa|down_0|NZ_CP043476.1_1825268_1826120_+	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|113aa|down_1|NZ_CP043476.1_1826205_1826544_-	pfam00543, P-II, Nitrogen regulatory protein P-II	NA|90aa|down_2|NZ_CP043476.1_1826720_1826990_+	COG2960, COG2960, Uncharacterized protein conserved in bacteria [Function unknown]	NA|519aa|down_3|NZ_CP043476.1_1827003_1828560_+	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|277aa|down_4|NZ_CP043476.1_1828917_1829748_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|717aa|down_5|NZ_CP043476.1_1830685_1832836_+	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism]	NA|155aa|down_6|NZ_CP043476.1_1833268_1833733_+	COG3918, COG3918, Predicted membrane protein [Function unknown]	NA|463aa|down_7|NZ_CP043476.1_1833729_1835118_+	PRK06370, PRK06370, FAD-containing oxidoreductase	NA|273aa|down_8|NZ_CP043476.1_1835397_1836216_-	pfam08668, HDOD, HDOD domain	NA|167aa|down_9|NZ_CP043476.1_1836462_1836963_+	NA
GCF_009769165.1_ASM976916v1	NZ_CP043476	Xanthomonas hyacinthi strain CFBP 1156 chromosome, complete genome	8	2164250-2168839	6,6,2	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	DEDDh,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas6f,cas7f,cas5f,cas8f,cas3f,DinG,csa3,Cas9_archaeal	Type I-F	TTTCTGAGCTGCCTATGCGGCAGTGAAC,TTTCTGAGCTGCCTATGCGGCAGTGAAC,TTTCTGAGCTGCCTATGCGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	76,76,45	76	TypeI-F	DEDDh,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas6f,cas7f,cas5f,cas8f,cas3f,DinG,csa3,Cas9_archaeal	NA|159aa|up_5|NZ_CP043476.1_2155836_2156313_-,NA|123aa|up_4|NZ_CP043476.1_2156318_2156687_-,NA	NA|457aa|up_9|NZ_CP043476.1_2151869_2153240_-	cd00433, Peptidase_M17, Cytosol aminopeptidase family, N-terminal and catalytic domains	NA|245aa|up_8|NZ_CP043476.1_2153280_2154015_-	PRK10748, PRK10748, 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB	NA|374aa|up_7|NZ_CP043476.1_2154125_2155247_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|152aa|up_6|NZ_CP043476.1_2155384_2155840_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|159aa|up_5|NZ_CP043476.1_2155836_2156313_-	NA	NA|123aa|up_4|NZ_CP043476.1_2156318_2156687_-	NA	NA|482aa|up_3|NZ_CP043476.1_2156947_2158393_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|718aa|up_2|NZ_CP043476.1_2158864_2161018_+	TIGR02504, ribonucleotide_reductase, ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent	NA|239aa|up_1|NZ_CP043476.1_2161214_2161931_+	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|280aa|up_0|NZ_CP043476.1_2162017_2162857_+	PRK08665, PRK08665, vitamin B12-dependent ribonucleotide reductase	cas6f|189aa|down_0|NZ_CP043476.1_2168969_2169536_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|350aa|down_1|NZ_CP043476.1_2169545_2170595_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|333aa|down_2|NZ_CP043476.1_2170624_2171623_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|453aa|down_3|NZ_CP043476.1_2171619_2172978_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3f|1138aa|down_4|NZ_CP043476.1_2173065_2176479_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|329aa|down_5|NZ_CP043476.1_2176475_2177462_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|323aa|down_6|NZ_CP043476.1_2178505_2179474_-	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily	NA|548aa|down_7|NZ_CP043476.1_2179582_2181226_+	PRK09255, PRK09255, malate synthase; Validated	NA|432aa|down_8|NZ_CP043476.1_2181378_2182674_+	PRK15063, PRK15063, isocitrate lyase; Provisional	NA|54aa|down_9|NZ_CP043476.1_2182759_2182921_+	pfam01527, HTH_Tnp_1, Transposase
GCF_009769165.1_ASM976916v1	NZ_CP043476	Xanthomonas hyacinthi strain CFBP 1156 chromosome, complete genome	9	4603473-4603621	7	CRISPRCasFinder	no		DEDDh,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas6f,cas7f,cas5f,cas8f,cas3f,DinG,csa3,Cas9_archaeal	Orphan	GGCAACGACATCCTGATCGGCGG	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas6f,cas7f,cas5f,cas8f,cas3f,DinG,csa3,Cas9_archaeal	NA|99aa|up_8|NZ_CP043476.1_4586934_4587231_-,NA|109aa|up_7|NZ_CP043476.1_4587241_4587568_-,NA|66aa|up_6|NZ_CP043476.1_4587683_4587881_-,NA|50aa|up_5|NZ_CP043476.1_4588182_4588332_-,NA|166aa|up_2|NZ_CP043476.1_4592689_4593187_+,NA|175aa|up_1|NZ_CP043476.1_4593386_4593911_+,NA|114aa|up_0|NZ_CP043476.1_4593913_4594255_+,NA|139aa|down_0|NZ_CP043476.1_4604608_4605025_-,NA|66aa|down_3|NZ_CP043476.1_4607784_4607982_-	NA|368aa|up_9|NZ_CP043476.1_4585818_4586921_+	pfam00665, rve, Integrase core domain	NA|99aa|up_8|NZ_CP043476.1_4586934_4587231_-	NA	NA|109aa|up_7|NZ_CP043476.1_4587241_4587568_-	NA	NA|66aa|up_6|NZ_CP043476.1_4587683_4587881_-	NA	NA|50aa|up_5|NZ_CP043476.1_4588182_4588332_-	NA	NA|727aa|up_4|NZ_CP043476.1_4589097_4591278_+	TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family	NA|473aa|up_3|NZ_CP043476.1_4591274_4592693_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|166aa|up_2|NZ_CP043476.1_4592689_4593187_+	NA	NA|175aa|up_1|NZ_CP043476.1_4593386_4593911_+	NA	NA|114aa|up_0|NZ_CP043476.1_4593913_4594255_+	NA	NA|139aa|down_0|NZ_CP043476.1_4604608_4605025_-	NA	NA|230aa|down_1|NZ_CP043476.1_4605005_4605695_-	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain	NA|90aa|down_2|NZ_CP043476.1_4607113_4607383_-	COG0864, NikR, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain [Transcription]	NA|66aa|down_3|NZ_CP043476.1_4607784_4607982_-	NA	NA|316aa|down_4|NZ_CP043476.1_4607978_4608926_-	pfam11740, KfrA_N, Plasmid replication region DNA-binding N-term	NA|363aa|down_5|NZ_CP043476.1_4609029_4610118_+	cd00799, INT_Cre_C, C-terminal catalytic domain of Cre recombinase (also called integrase)	NA|680aa|down_6|NZ_CP043476.1_4610205_4612245_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|645aa|down_7|NZ_CP043476.1_4612241_4614176_+	pfam00580, UvrD-helicase, UvrD/REP helicase N-terminal domain	NA|458aa|down_8|NZ_CP043476.1_4614508_4615882_-	smart00901, FRG, This domain contains a conserved N-terminal (F/Y)RG motif	NA|339aa|down_9|NZ_CP043476.1_4616619_4617636_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
