The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP046844	Vibrio cholerae C6706 chromosome 1, complete sequence	3019938	99933	108551	3019938	integrase,tRNA,transposase	Vibrio_phage(33.33%)	7	101013:101025	107660:107672
WP_100068541.1|99933_101110_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	65.1	8.6e-118
101013:101025	attL	AGCCAGCTCAGGC	NA	NA	NA	NA
WP_001129565.1|101146_102388_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	47.3	9.1e-110
WP_000372618.1|102773_104651_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	32.9	1.5e-34
WP_000907210.1|104749_106513_-	DNA primase	NA	A0A1S5RG58	Helicobacter_phage	30.7	1.1e-44
WP_001173892.1|106602_107046_-	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	49.3	3.7e-29
WP_001145625.1|107075_107291_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_001220122.1|107531_108551_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	57.4	2.6e-107
107660:107672	attR	GCCTGAGCTGGCT	NA	NA	NA	NA
>prophage 2
NZ_CP046844	Vibrio cholerae C6706 chromosome 1, complete sequence	3019938	114681	121944	3019938		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_001883363.1|114681_115473_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.6	8.4e-69
WP_000002982.1|115465_116092_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_000177568.1|116091_117027_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000116737.1|117100_118108_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_001894770.1|118200_120789_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
WP_001279365.1|121056_121944_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
>prophage 3
NZ_CP046844	Vibrio cholerae C6706 chromosome 1, complete sequence	3019938	353573	360766	3019938		Faustovirus(16.67%)	9	NA	NA
WP_000775253.1|353573_354788_+	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
WP_000331703.1|354824_355208_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000301571.1|355268_355592_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_001105747.1|355640_356156_+	co-chaperone HscB	NA	NA	NA	NA	NA
WP_001196560.1|356179_358030_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
WP_001124187.1|358043_358382_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_000872176.1|358430_358625_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_000107237.1|358844_360134_+	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_001162850.1|360337_360766_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
>prophage 4
NZ_CP046844	Vibrio cholerae C6706 chromosome 1, complete sequence	3019938	1099751	1132369	3019938		Vibrio_phage(47.37%)	25	NA	NA
WP_149591715.1|1099751_1101857_-	RTX toxin T1SS ABC transporter subunit RtxB	NA	W8CYL7	Bacillus_phage	27.1	4.9e-39
WP_000514481.1|1102271_1102631_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001881196.1|1102656_1103118_+	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA	NA
WP_001881197.1|1103102_1116779_+	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
WP_000053920.1|1117146_1117371_-	RstC protein	NA	U5TMI6	Satellite_phage	100.0	1.1e-34
WP_010895442.1|1117464_1117839_-	hypothetical protein	NA	B9V3G5	Vibrio_virus	100.0	1.2e-68
WP_000743997.1|1117816_1118896_-	hypothetical protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_000693566.1|1119021_1119360_+	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000593522.1|1119972_1120347_-	cholera enterotoxin binding subunit CtxB	NA	Q77DH7	Vibrio_virus	100.0	7.8e-65
WP_001881225.1|1120343_1121120_-	cholera enterotoxin catalytic subunit CtxA	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
WP_000021616.1|1121218_1122418_-	zonula occludens toxin ZOT	NA	A0A142I6Z1	Vibrio_phage	100.0	5.3e-240
WP_000979342.1|1122414_1122708_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_001881237.1|1122704_1123988_-	hypothetical protein	NA	A0A142I701	Vibrio_phage	100.0	9.1e-222
WP_000493022.1|1123998_1124247_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001888513.1|1124382_1124763_-	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	4.0e-69
WP_000743997.1|1124740_1125820_-	hypothetical protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_000693566.1|1125945_1126284_+	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000170634.1|1126773_1127358_-	DNA-binding protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
WP_001161489.1|1127350_1127518_-	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_001052672.1|1127595_1128288_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001881265.1|1128417_1128702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001881266.1|1128706_1130275_-	replication protein	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
WP_001265358.1|1130436_1131003_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000170632.1|1132041_1132209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001161489.1|1132201_1132369_-	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
>prophage 5
NZ_CP046844	Vibrio cholerae C6706 chromosome 1, complete sequence	3019938	1141013	1191219	3019938	head,terminase,transposase,portal,capsid,protease	Vibrio_phage(46.67%)	46	NA	NA
WP_086026889.1|1141013_1142235_+|transposase	IS3-like element ISVch4 family transposase	transposase	Q716C2	Shigella_phage	65.1	1.5e-117
WP_001881271.1|1143144_1143504_-	hypothetical protein	NA	E3U9J1	Vibrio_phage	100.0	7.6e-09
WP_001881272.1|1143614_1143947_-	DUF3634 family protein	NA	NA	NA	NA	NA
WP_000877146.1|1143951_1144401_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_001881274.1|1144417_1146214_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_001180252.1|1146278_1146797_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001881287.1|1146879_1147053_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000087036.1|1147220_1148915_-	DUF3466 family protein	NA	NA	NA	NA	NA
WP_001174034.1|1148920_1150840_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.7	7.6e-55
WP_000631987.1|1150817_1151060_-	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_001077794.1|1151068_1153195_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_000917529.1|1153654_1154197_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000966885.1|1154351_1155362_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_000126926.1|1155435_1160277_-	NAD-glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_001881297.1|1160465_1160702_-	DUF2835 domain-containing protein	NA	NA	NA	NA	NA
WP_000377996.1|1160735_1163360_-	aminopeptidase N	NA	NA	NA	NA	NA
WP_001994019.1|1163432_1163669_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001241333.1|1164617_1165130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001912825.1|1165446_1166712_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_000347185.1|1166713_1167136_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000092362.1|1167199_1167565_-	peptidase M15	NA	A0A2I7RAT1	Vibrio_phage	60.3	8.7e-37
WP_000279700.1|1167548_1168106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000291407.1|1168105_1169113_-	radical SAM protein	NA	NA	NA	NA	NA
WP_001005176.1|1169129_1169495_-	hypothetical protein	NA	C8ZKF3	Pseudomonas_phage	46.2	1.8e-05
WP_000521739.1|1169495_1175438_-	fibronectin type III domain-containing protein	NA	M4MHT9	Vibrio_phage	30.9	2.0e-98
WP_000491559.1|1175441_1175837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000168946.1|1175839_1176379_-	hypothetical protein	NA	M4MD40	Vibrio_phage	35.1	4.5e-21
WP_000250921.1|1176389_1176971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000907543.1|1176972_1179285_-	hypothetical protein	NA	A0A1Q1PW43	Pseudoalteromonas_phage	22.6	4.4e-09
WP_000967642.1|1179301_1179592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001081280.1|1179636_1179972_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000907300.1|1180024_1180495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001994025.1|1180508_1180832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000049624.1|1180879_1181491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001252475.1|1181477_1181825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000020008.1|1181836_1182388_-	hypothetical protein	NA	A0A2I7QU98	Vibrio_phage	28.0	8.9e-09
WP_000667008.1|1182402_1183593_-|capsid	phage major capsid protein	capsid	M4MA06	Vibrio_phage	33.3	1.3e-36
WP_000944879.1|1183691_1184540_-|head,protease	HK97 family phage prohead protease	head,protease	Q6JIM8	Burkholderia_virus	39.1	7.0e-29
WP_000523754.1|1184502_1185828_-|portal	phage portal protein	portal	M4MHV5	Vibrio_phage	38.9	1.2e-75
WP_001070130.1|1185837_1187598_-|terminase	terminase large subunit	terminase	A0A0K1LKI4	Staphylococcus_phage	35.9	1.1e-81
WP_000165579.1|1187788_1188004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001046237.1|1188031_1188712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001994028.1|1188708_1189152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080004477.1|1189294_1189705_-|terminase	phage terminase small subunit P27 family	terminase	A0A1W6JP17	Morganella_phage	31.6	5.8e-05
WP_000243876.1|1190175_1190364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000858033.1|1190574_1191219_+	antirestriction protein	NA	G0YPX7	Erwinia_phage	33.5	1.1e-10
>prophage 6
NZ_CP046844	Vibrio cholerae C6706 chromosome 1, complete sequence	3019938	1195874	1203601	3019938		Diadromus_pulchellus_ascovirus(14.29%)	9	NA	NA
WP_001146354.1|1195874_1196462_-	AAA family ATPase	NA	F2NYY4	Diadromus_pulchellus_ascovirus	33.1	2.1e-08
WP_000576446.1|1196481_1196751_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000275003.1|1196955_1197549_-	AAA family ATPase	NA	A0A249Y6S3	Cherax_quadricarinatus_iridovirus	30.0	3.7e-08
WP_000784089.1|1197681_1197939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001912807.1|1197935_1198220_-	hypothetical protein	NA	A0A142K9B6	Gordonia_phage	51.9	3.9e-08
WP_001044551.1|1198402_1199263_-	exonuclease	NA	F1D0G7	Vibrio_phage	43.0	3.1e-56
WP_000467314.1|1199456_1199888_-	tellurite resistance TerB family protein	NA	Q1MVI3	Enterobacteria_phage	47.9	2.1e-29
WP_000983185.1|1199912_1201967_-	hypothetical protein	NA	A0A0F7DD46	Delftia_phage	40.8	7.1e-144
WP_000046513.1|1201966_1203601_-	toprim domain-containing protein	NA	L7TLT7	Rhizobium_phage	49.0	1.6e-122
>prophage 7
NZ_CP046844	Vibrio cholerae C6706 chromosome 1, complete sequence	3019938	2028213	2034830	3019938		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000864130.1|2028213_2028684_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
WP_001122865.1|2028948_2030058_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000493874.1|2030098_2030752_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001131994.1|2030756_2031860_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
WP_000543544.1|2031885_2032335_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_001890340.1|2032434_2033688_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000210573.1|2033696_2034830_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
