assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009763665.1_ASM976366v1	NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	1	127940-129827	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas1,cas3f,cas7f,cas5,cas6f	csx1,cas3,DinG,WYL,cas1,cas3f,cas7f,cas5,cas6f,DEDDh,csa3,cas5f,cas8f,TnsE_C	Unclear	GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	31,31,29	31	Unclear	csx1,cas3,DinG,WYL,cas1,cas3f,cas7f,cas5,cas6f,DEDDh,csa3,cas5f,cas8f,TnsE_C	NA|536aa|up_9|NZ_CP046839.1_115024_116632_-,cas7f|316aa|up_2|NZ_CP046839.1_125281_126229_+,cas5|337aa|up_1|NZ_CP046839.1_126237_127248_+,NA	NA|536aa|up_9|NZ_CP046839.1_115024_116632_-	NA	NA|263aa|up_8|NZ_CP046839.1_116621_117410_-	pfam13503, DUF4123, Domain of unknown function (DUF4123)	NA|659aa|up_7|NZ_CP046839.1_117409_119386_-	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein	NA|173aa|up_6|NZ_CP046839.1_119512_120031_-	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family	WYL|265aa|up_5|NZ_CP046839.1_120446_121241_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	cas1|330aa|up_4|NZ_CP046839.1_121355_122345_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|979aa|up_3|NZ_CP046839.1_122341_125278_+	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas7f|316aa|up_2|NZ_CP046839.1_125281_126229_+	NA	cas5|337aa|up_1|NZ_CP046839.1_126237_127248_+	NA	cas6f|184aa|up_0|NZ_CP046839.1_127256_127808_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|412aa|down_0|NZ_CP046839.1_130039_131275_-	PRK09692, PRK09692, integrase; Provisional	NA|365aa|down_1|NZ_CP046839.1_134925_136020_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|193aa|down_2|NZ_CP046839.1_136235_136814_-	COG3009, COG3009, Uncharacterized protein conserved in bacteria [Function unknown]	NA|543aa|down_3|NZ_CP046839.1_136810_138439_-	COG3008, PqiB, Paraquat-inducible protein B [General function prediction only]	NA|433aa|down_4|NZ_CP046839.1_138453_139752_-	COG2995, PqiA, Uncharacterized paraquat-inducible protein A [Function unknown]	NA|210aa|down_5|NZ_CP046839.1_140018_140648_+	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|489aa|down_6|NZ_CP046839.1_140665_142132_+	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|94aa|down_7|NZ_CP046839.1_142112_142394_-	pfam07383, DUF1496, Protein of unknown function (DUF1496)	NA|304aa|down_8|NZ_CP046839.1_142438_143350_-	COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]	NA|225aa|down_9|NZ_CP046839.1_143834_144509_+	pfam17939, TetR_C_30, Tetracyclin repressor-like, C-terminal domain
GCF_009763665.1_ASM976366v1	NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	2	1092067-1094617	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL	csx1,cas3,DinG,WYL,cas1,cas3f,cas7f,cas5,cas6f,DEDDh,csa3,cas5f,cas8f,TnsE_C	Type I-F	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	42,42,41	42	TypeI-F	csx1,cas3,DinG,WYL,cas1,cas3f,cas7f,cas5,cas6f,DEDDh,csa3,cas5f,cas8f,TnsE_C	NA,NA	NA|382aa|up_9|NZ_CP046839.1_1080919_1082065_-	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|636aa|up_8|NZ_CP046839.1_1082265_1084173_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|201aa|up_7|NZ_CP046839.1_1084436_1085039_-	PRK14150, PRK14150, heat shock protein GrpE; Provisional	NA|295aa|up_6|NZ_CP046839.1_1085184_1086069_+	PRK03378, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|555aa|up_5|NZ_CP046839.1_1086198_1087863_+	PRK10869, PRK10869, recombination and repair protein; Provisional	NA|137aa|up_4|NZ_CP046839.1_1087970_1088381_+	COG2913, OlmA, Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane]	NA|104aa|up_3|NZ_CP046839.1_1088458_1088770_-	PRK01777, PRK01777, RnfH family protein	NA|145aa|up_2|NZ_CP046839.1_1088766_1089201_-	COG2867, COG2867, Oligoketide cyclase/lipid transport protein [Lipid metabolism]	NA|162aa|up_1|NZ_CP046839.1_1089384_1089870_+	PRK05422, smpB, SsrA-binding protein SmpB	NA|413aa|up_0|NZ_CP046839.1_1090471_1091710_+	PRK09692, PRK09692, integrase; Provisional	cas6f|213aa|down_0|NZ_CP046839.1_1094772_1095411_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|348aa|down_1|NZ_CP046839.1_1095420_1096464_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|314aa|down_2|NZ_CP046839.1_1096475_1097417_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|385aa|down_3|NZ_CP046839.1_1097413_1098568_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3f|1125aa|down_4|NZ_CP046839.1_1098963_1102338_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas1|330aa|down_5|NZ_CP046839.1_1102334_1103324_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	WYL|265aa|down_6|NZ_CP046839.1_1103438_1104233_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|173aa|down_7|NZ_CP046839.1_1104648_1105167_+	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family	NA|659aa|down_8|NZ_CP046839.1_1105293_1107270_+	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein	NA|263aa|down_9|NZ_CP046839.1_1107269_1108058_+	pfam13503, DUF4123, Domain of unknown function (DUF4123)
GCF_009763665.1_ASM976366v1	NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3	1434695-1434831	3	PILER-CR	no	TnsE_C	csx1,cas3,DinG,WYL,cas1,cas3f,cas7f,cas5,cas6f,DEDDh,csa3,cas5f,cas8f,TnsE_C	Orphan	AATAAAGTATCATACT	16	0	0	NA	NA	NA	2	2	Orphan	csx1,cas3,DinG,WYL,cas1,cas3f,cas7f,cas5,cas6f,DEDDh,csa3,cas5f,cas8f,TnsE_C	NA,NA|214aa|down_0|NZ_CP046839.1_1434836_1435478_-,NA|112aa|down_2|NZ_CP046839.1_1436508_1436844_-,NA|199aa|down_3|NZ_CP046839.1_1436923_1437520_+	NA|130aa|up_9|NZ_CP046839.1_1422918_1423308_-	PRK11593, folB, bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA|209aa|up_8|NZ_CP046839.1_1423460_1424087_+	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY	NA|271aa|up_7|NZ_CP046839.1_1424135_1424948_-	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|340aa|up_6|NZ_CP046839.1_1425100_1426120_-	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|72aa|up_5|NZ_CP046839.1_1426360_1426576_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|148aa|up_4|NZ_CP046839.1_1426605_1427049_+	pfam09424, YqeY, Yqey-like protein	NA|588aa|up_3|NZ_CP046839.1_1427138_1428902_+	PRK05667, dnaG, DNA primase; Validated	NA|626aa|up_2|NZ_CP046839.1_1429000_1430878_+	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated	NA|587aa|up_1|NZ_CP046839.1_1431545_1433306_+	COG3176, COG3176, Putative hemolysin [General function prediction only]	NA|360aa|up_0|NZ_CP046839.1_1433562_1434642_+	COG4663, FcbT1, TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|214aa|down_0|NZ_CP046839.1_1434836_1435478_-	NA	NA|333aa|down_1|NZ_CP046839.1_1435493_1436492_-	cd07334, M48C_loiP_like, Peptidase M48C Ste24p loiP-like, integral membrane protein	NA|112aa|down_2|NZ_CP046839.1_1436508_1436844_-	NA	NA|199aa|down_3|NZ_CP046839.1_1436923_1437520_+	NA	NA|511aa|down_4|NZ_CP046839.1_1437766_1439299_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|247aa|down_5|NZ_CP046839.1_1439309_1440050_+	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|319aa|down_6|NZ_CP046839.1_1441171_1442128_-	pfam14350, Beta_protein, Beta protein	TnsE_C|532aa|down_7|NZ_CP046839.1_1442231_1443827_-	pfam18623, TnsE_C, TnsE C-terminal domain	NA|515aa|down_8|NZ_CP046839.1_1443784_1445329_-	pfam06527, TniQ, TniQ	NA|546aa|down_9|NZ_CP046839.1_1445329_1446967_-	pfam13401, AAA_22, AAA domain
GCF_009763665.1_ASM976366v1	NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	4	1497211-1497455	4	PILER-CR	no		csx1,cas3,DinG,WYL,cas1,cas3f,cas7f,cas5,cas6f,DEDDh,csa3,cas5f,cas8f,TnsE_C	Orphan	AAAATGTGCCTCCTTAGCTCAGTCGGTAGAGCAACGGACTGATAATCCGC	50	0	0	NA	NA	NA	2	2	Orphan	csx1,cas3,DinG,WYL,cas1,cas3f,cas7f,cas5,cas6f,DEDDh,csa3,cas5f,cas8f,TnsE_C	NA,NA	NA|186aa|up_9|NZ_CP046839.1_1489003_1489561_+	COG0762, COG0762, Predicted integral membrane protein [Function unknown]	NA|97aa|up_8|NZ_CP046839.1_1489560_1489851_+	PRK05090, PRK05090, hypothetical protein; Validated	NA|144aa|up_7|NZ_CP046839.1_1489896_1490328_+	pfam14467, DUF4426, Domain of unknown function (DUF4426)	NA|201aa|up_6|NZ_CP046839.1_1490397_1491000_+	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed	NA|392aa|up_5|NZ_CP046839.1_1490993_1492169_+	PRK05660, PRK05660, radical SAM family heme chaperone HemW	NA|307aa|up_4|NZ_CP046839.1_1492413_1493334_-	PRK00971, PRK00971, glutaminase; Provisional	NA|240aa|up_3|NZ_CP046839.1_1493444_1494164_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|354aa|up_2|NZ_CP046839.1_1494403_1495465_+	PRK10880, PRK10880, adenine DNA glycosylase	NA|91aa|up_1|NZ_CP046839.1_1495478_1495751_+	PRK05408, PRK05408, oxidative damage protection protein; Provisional	NA|376aa|up_0|NZ_CP046839.1_1495852_1496980_+	PRK11671, mltC, membrane-bound lytic murein transglycosylase MltC	NA|542aa|down_0|NZ_CP046839.1_1497743_1499369_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|285aa|down_1|NZ_CP046839.1_1500415_1501270_-	PRK09430, djlA, co-chaperone DjlA	NA|801aa|down_2|NZ_CP046839.1_1501416_1503819_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|432aa|down_3|NZ_CP046839.1_1503871_1505167_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|331aa|down_4|NZ_CP046839.1_1505156_1506149_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|272aa|down_5|NZ_CP046839.1_1506162_1506978_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|127aa|down_6|NZ_CP046839.1_1507059_1507440_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|270aa|down_7|NZ_CP046839.1_1507450_1508260_+	PRK00166, apaH, symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA|166aa|down_8|NZ_CP046839.1_1508409_1508907_-	pfam00186, DHFR_1, Dihydrofolate reductase	NA|162aa|down_9|NZ_CP046839.1_1508919_1509405_-	PRK09917, PRK09917, threonine/serine exporter
GCF_009763665.1_ASM976366v1	NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1	802143-803671	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3	Orphan	GTTCACTGCCGCACAGGCAGCTTAGAAA,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	25,25,25	25	Orphan	csx1,cas3,DinG,WYL,cas1,cas3f,cas7f,cas5,cas6f,DEDDh,csa3,cas5f,cas8f,TnsE_C	NA|112aa|up_9|NZ_CP046838.1_792096_792432_-,NA|40aa|up_1|NZ_CP046838.1_801295_801415_-,NA|115aa|down_2|NZ_CP046838.1_804948_805293_-,NA|132aa|down_7|NZ_CP046838.1_807823_808219_-	NA|112aa|up_9|NZ_CP046838.1_792096_792432_-	NA	NA|376aa|up_8|NZ_CP046838.1_792800_793928_-	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|376aa|up_7|NZ_CP046838.1_794856_795984_-	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|96aa|up_6|NZ_CP046838.1_796391_796679_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|98aa|up_5|NZ_CP046838.1_796675_796969_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|78aa|up_4|NZ_CP046838.1_797289_797523_-	pfam12493, DUF3709, Protein of unknown function (DUF3709)	NA|82aa|up_3|NZ_CP046838.1_800792_801038_+	pfam07362, CcdA, Post-segregation antitoxin CcdA	NA|106aa|up_2|NZ_CP046838.1_801037_801355_+	pfam01845, CcdB, CcdB protein	NA|40aa|up_1|NZ_CP046838.1_801295_801415_-	NA	NA|78aa|up_0|NZ_CP046838.1_801602_801836_-	pfam12493, DUF3709, Protein of unknown function (DUF3709)	NA|55aa|down_0|NZ_CP046838.1_804012_804177_-	pfam04875, DUF645, Protein of unknown function, DUF645	NA|42aa|down_1|NZ_CP046838.1_804363_804489_-	pfam11665, DUF3265, Protein of unknown function (DUF3265)	NA|115aa|down_2|NZ_CP046838.1_804948_805293_-	NA	NA|46aa|down_3|NZ_CP046838.1_806083_806221_-	pfam04875, DUF645, Protein of unknown function, DUF645	NA|82aa|down_4|NZ_CP046838.1_806575_806821_+	pfam07362, CcdA, Post-segregation antitoxin CcdA	NA|106aa|down_5|NZ_CP046838.1_806820_807138_+	pfam01845, CcdB, CcdB protein	NA|142aa|down_6|NZ_CP046838.1_807254_807680_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	NA|132aa|down_7|NZ_CP046838.1_807823_808219_-	NA	NA|147aa|down_8|NZ_CP046838.1_808342_808783_-	COG3755, COG3755, Uncharacterized protein conserved in bacteria [Function unknown]	NA|64aa|down_9|NZ_CP046838.1_808826_809018_-	pfam11665, DUF3265, Protein of unknown function (DUF3265)
