The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	0	1034	3073750		Bacillus_virus(100.0%)	1	NA	NA
WP_001182759.1|212_1034_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.4	1.4e-18
>prophage 2
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	11972	14855	3073750		Mycobacterium_phage(100.0%)	1	NA	NA
WP_000471959.1|11972_14855_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	49.1	5.1e-87
>prophage 3
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	20163	22182	3073750		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_080284529.1|20163_22182_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.4	9.5e-32
>prophage 4
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	38187	44795	3073750		Planktothrix_phage(33.33%)	6	NA	NA
WP_001061290.1|38187_38874_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	42.9	7.9e-39
WP_000493012.1|38874_40119_+	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA	NA
WP_001906869.1|40087_40225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001881633.1|40233_40764_-	DUF2062 domain-containing protein	NA	NA	NA	NA	NA
WP_080385684.1|40757_43016_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	25.4	3.0e-18
WP_000052155.1|43046_44795_+	lipid A ABC transporter ATP-binding protein/permease MsbA	NA	W8CYL7	Bacillus_phage	29.3	3.0e-58
>prophage 5
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	48387	49659	3073750		Bacillus_phage(100.0%)	1	NA	NA
WP_032470887.1|48387_49659_-	YeaH/YhbH family protein	NA	A0A140HLI1	Bacillus_phage	30.2	5.4e-09
>prophage 6
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	54763	73858	3073750		Tetraselmis_virus(28.57%)	16	NA	NA
WP_000103941.1|54763_55504_-	pyruvate formate lyase 1-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	32.4	6.1e-29
WP_001965503.1|55836_57717_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	25.0	6.1e-17
WP_080476505.1|57734_58763_-	lipid A deacylase LpxR family protein	NA	NA	NA	NA	NA
WP_000840420.1|58898_61175_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	42.1	6.0e-160
WP_123161301.1|61440_62994_-	DUF3360 domain-containing protein	NA	NA	NA	NA	NA
WP_153733709.1|63307_63478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000133010.1|63698_64469_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	26.7	4.4e-14
WP_001881615.1|64647_65430_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000886243.1|65577_66318_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000347798.1|66320_66998_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000864795.1|67056_67863_-	exodeoxyribonuclease III	NA	A0A0N9QXX6	Chrysochromulina_ericina_virus	25.5	3.0e-13
WP_001249009.1|68060_70181_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	49.2	8.2e-18
WP_000106919.1|70204_70417_-	pleiotropic regulatory protein RsmS	NA	NA	NA	NA	NA
WP_080299764.1|70417_70981_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_001890513.1|70965_71745_-	TSUP family transporter	NA	NA	NA	NA	NA
WP_123161302.1|71782_73858_-	ATP-dependent DNA helicase DinG	NA	A0A127AW80	Bacillus_phage	28.1	4.5e-45
>prophage 7
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	78772	83169	3073750	tRNA	uncultured_Mediterranean_phage(25.0%)	5	NA	NA
WP_000631302.1|78772_79267_-	peptidyl-prolyl cis-trans isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	35.0	7.0e-13
WP_000913178.1|79412_80792_+|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	27.7	1.2e-54
WP_000111359.1|80879_81401_+	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	34.2	6.5e-09
WP_000580348.1|81494_82109_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_032480977.1|82164_83169_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	24.7	4.3e-09
>prophage 8
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	94364	96575	3073750		Hokovirus(100.0%)	1	NA	NA
WP_123161305.1|94364_96575_+	response regulator	NA	A0A1V0SGX0	Hokovirus	33.9	8.2e-53
>prophage 9
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	101502	102210	3073750		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_123161306.1|101502_102210_-	SDR family oxidoreductase	NA	Q56AQ6	Bacillus_thuringiensis_phage	39.8	9.6e-32
>prophage 10
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	105531	105762	3073750		Vibrio_phage(100.0%)	1	NA	NA
WP_080287387.1|105531_105762_+	AlpA family transcriptional regulator	NA	A0A1V0E8E5	Vibrio_phage	48.3	6.8e-11
>prophage 11
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	110528	114017	3073750	transposase	Vibrio_phage(33.33%)	4	NA	NA
WP_123161312.1|110528_110735_+	AlpA family transcriptional regulator	NA	A0A1V0E8E5	Vibrio_phage	51.7	1.3e-10
WP_055064936.1|110893_111433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086010051.1|111711_112924_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	65.5	6.8e-118
WP_001117493.1|113717_114017_-	type VI secretion system PAAR protein	NA	J9SWA2	Campylobacter_phage	46.4	3.5e-07
>prophage 12
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	117409	122345	3073750		Ralstonia_phage(50.0%)	4	NA	NA
WP_032480690.1|117409_119386_-	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	27.0	1.1e-32
WP_001142919.1|119512_120031_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_000880612.1|120446_121241_+	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_000342415.1|121355_122345_+	type I-F CRISPR-associated endonuclease Cas1	NA	A0A2D0YFC9	Vibrio_phage	38.0	6.4e-50
>prophage 13
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	130039	131275	3073750	integrase	Vibrio_phage(100.0%)	1	123103:123118	138858:138873
123103:123118	attL	CTTGGCAAATCAGAAG	NA	NA	NA	NA
WP_114735788.1|130039_131275_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	62.2	2.1e-146
WP_114735788.1|130039_131275_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	62.2	2.1e-146
138858:138873	attR	CTTCTGATTTGCCAAG	NA	NA	NA	NA
>prophage 14
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	152641	157157	3073750		Tupanvirus(50.0%)	2	NA	NA
WP_123161320.1|152641_155272_+	type I DNA topoisomerase	NA	A0A2K9L5F8	Tupanvirus	34.5	2.6e-90
WP_000929349.1|155939_157157_+	glucose-1-phosphate adenylyltransferase	NA	G3MA50	Bacillus_virus	27.8	1.1e-06
>prophage 15
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	174496	182504	3073750		Pseudomonas_phage(50.0%)	3	NA	NA
WP_123161324.1|174496_176866_-	YgiQ family radical SAM protein	NA	M1QSD9	Pseudomonas_phage	71.4	1.4e-103
WP_123161325.1|177145_179602_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_123161326.1|179735_182504_-	insulinase family protein	NA	A0A2K9LA15	Tupanvirus	25.9	2.2e-15
>prophage 16
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	188256	188697	3073750		Xanthomonas_phage(100.0%)	1	NA	NA
WP_001881488.1|188256_188697_-	acyl-CoA thioester hydrolase YciA	NA	A0A292GK23	Xanthomonas_phage	33.6	2.3e-07
>prophage 17
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	195152	197615	3073750		Escherichia_phage(100.0%)	1	NA	NA
WP_123161327.1|195152_197615_+	trimethylamine-N-oxide reductase TorA	NA	A0A077SK27	Escherichia_phage	30.0	5.5e-74
>prophage 18
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	203260	204049	3073750		Bacillus_virus(100.0%)	1	NA	NA
WP_001275043.1|203260_204049_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.5	2.9e-13
>prophage 19
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	213397	216511	3073750		Leptospira_phage(100.0%)	1	NA	NA
WP_123161329.1|213397_216511_+	efflux RND transporter permease subunit VexK	NA	S5VL66	Leptospira_phage	21.0	1.0e-32
>prophage 20
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	226250	226913	3073750		Planktothrix_phage(100.0%)	1	NA	NA
WP_123161330.1|226250_226913_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-16
>prophage 21
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	232284	233211	3073750		Bacillus_virus(100.0%)	1	NA	NA
WP_001286641.1|232284_233211_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.4	2.9e-20
>prophage 22
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	241959	243173	3073750	transposase	Shigella_phage(100.0%)	1	NA	NA
WP_086010051.1|241959_243173_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	65.5	6.8e-118
>prophage 23
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	249965	251594	3073750	protease	Neodiprion_sertifer_nucleopolyhedrovirus(100.0%)	1	NA	NA
WP_032481011.1|249965_251594_+|protease	trypsin-like serine protease	protease	Q6JKF3	Neodiprion_sertifer_nucleopolyhedrovirus	33.2	4.8e-26
>prophage 24
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	258642	260433	3073750		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_080286443.1|258642_260433_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	37.7	8.1e-35
>prophage 25
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	263842	266979	3073750		Feldmannia_species_virus(50.0%)	3	NA	NA
WP_000699609.1|263842_264502_-	response regulator transcription factor	NA	B5LWA6	Feldmannia_species_virus	32.7	1.5e-07
WP_001881427.1|264513_264921_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_000288431.1|265194_266979_-	DEAD/DEAH box helicase	NA	M4Q3N1	Vibrio_phage	41.9	2.8e-96
>prophage 26
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	273143	273815	3073750		Planktothrix_phage(100.0%)	1	NA	NA
WP_000939696.1|273143_273815_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.8	7.5e-26
>prophage 27
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	277646	282278	3073750		uncultured_Caudovirales_phage(50.0%)	2	NA	NA
WP_001281944.1|277646_278795_+	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	52.8	2.9e-94
WP_123161336.1|279392_282278_+	diaminobutyrate--2-oxoglutarate transaminase family protein	NA	S4W1T5	Pandoravirus	26.0	1.1e-17
>prophage 28
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	300422	301292	3073750		Burkholderia_virus(100.0%)	1	NA	NA
WP_032481287.1|300422_301292_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	24.3	2.5e-05
>prophage 29
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	305675	306125	3073750		Acidovorax_phage(100.0%)	1	NA	NA
WP_001904046.1|305675_306125_+	ATP-binding protein	NA	A0A218M380	Acidovorax_phage	38.1	4.0e-15
>prophage 30
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	314723	315710	3073750		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_001881388.1|314723_315710_+	chemotaxis protein CheV	NA	Q56AR1	Bacillus_thuringiensis_phage	74.3	3.9e-132
>prophage 31
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	325347	332184	3073750		Bacillus_phage(33.33%)	6	NA	NA
WP_080007469.1|325347_326637_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	35.9	4.1e-20
WP_001015556.1|326719_327574_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_032471392.1|327816_328575_-	SDR family oxidoreductase	NA	A0A2P0VP75	Tetraselmis_virus	26.3	7.5e-06
WP_001191535.1|328571_330275_-	acetolactate synthase AlsS	NA	NA	NA	NA	NA
WP_001068896.1|330411_331197_-	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_080390007.1|331302_332184_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	36.9	1.7e-06
>prophage 32
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	336353	338999	3073750		Burkholderia_virus(50.0%)	2	NA	NA
WP_000927682.1|336353_337265_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	43.9	2.0e-05
WP_050498139.1|337328_338999_+	lipid A modification system glycine--protein ligase AlmE	NA	A0A2K9KZV5	Tupanvirus	29.9	4.4e-35
>prophage 33
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	346251	346953	3073750		Planktothrix_phage(100.0%)	1	NA	NA
WP_123161342.1|346251_346953_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.6	6.4e-36
>prophage 34
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	357478	362262	3073750		Enterobacteria_phage(33.33%)	6	NA	NA
WP_080286505.1|357478_358513_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	30.1	2.3e-29
WP_000152367.1|358647_359010_+	RidA family protein	NA	NA	NA	NA	NA
WP_080099498.1|358978_359491_+	DUF386 domain-containing protein	NA	NA	NA	NA	NA
WP_001891793.1|359566_360280_-	glycerophosphoryl diester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	26.7	1.1e-11
WP_000055357.1|360307_361069_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_032481301.1|361086_362262_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	32.7	3.3e-21
>prophage 35
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	370844	371693	3073750		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
WP_032471405.1|370844_371693_+	DNA ligase	NA	F2Y1N0	Organic_Lake_phycodnavirus	33.8	8.3e-30
>prophage 36
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	376615	379226	3073750		Bacillus_phage(50.0%)	2	NA	NA
WP_000958712.1|376615_377116_-	lipoprotein NlpC	NA	S5MM68	Bacillus_phage	34.6	1.1e-10
WP_123161345.1|377204_379226_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	53.6	4.6e-10
>prophage 37
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	384820	385543	3073750		Staphylococcus_phage(100.0%)	1	NA	NA
WP_032471413.1|384820_385543_-	energy-coupling factor ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.0	6.8e-17
>prophage 38
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	388819	392657	3073750		Ectocarpus_siliculosus_virus(50.0%)	2	NA	NA
WP_123161347.1|388819_390853_+	HAMP domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	25.8	5.3e-06
WP_000625974.1|391064_392657_+	ABC-F family ATPase	NA	A0A2K9L0W2	Tupanvirus	27.1	1.1e-54
>prophage 39
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	400561	405220	3073750		Escherichia_phage(33.33%)	6	NA	NA
WP_000113430.1|400561_401170_+	4Fe-4S dicluster domain-containing protein	NA	A0A077SL61	Escherichia_phage	31.1	2.6e-17
WP_123161349.1|401170_402244_+	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_001070822.1|402230_402653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123161350.1|402750_403530_+	NAD-dependent protein deacylase	NA	A0A2I7S9Y2	Vibrio_phage	32.4	3.0e-18
WP_001138886.1|403664_404147_-	YajQ family cyclic di-GMP-binding protein	NA	NA	NA	NA	NA
WP_001128804.1|404158_405220_-	3-deoxy-7-phosphoheptulonate synthase	NA	A0A0B5IW14	Pandoravirus	49.4	2.6e-89
>prophage 40
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	413904	419002	3073750		Bacillus_phage(50.0%)	4	NA	NA
WP_001884791.1|413904_415737_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.7	1.9e-39
WP_080285422.1|415681_416260_+	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_000432038.1|416360_416987_+	RNA chaperone ProQ	NA	NA	NA	NA	NA
WP_032471685.1|417004_419002_+	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	31.3	4.9e-81
>prophage 41
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	432528	434448	3073750		Tupanvirus(100.0%)	1	NA	NA
WP_001965092.1|432528_434448_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.7	5.8e-55
>prophage 42
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	439948	469868	3073750		Vibrio_virus(42.86%)	18	NA	NA
WP_001908093.1|439948_440308_+	hypothetical protein	NA	E3U9J1	Vibrio_phage	100.0	3.8e-08
WP_000385100.1|440968_441484_-	helix-turn-helix transcriptional regulator	NA	Q2PZB7	Vibrio_virus	51.0	8.6e-06
WP_050492459.1|441604_442747_+	fumarate reductase	NA	NA	NA	NA	NA
WP_000590115.1|442758_443040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_119467809.1|443036_443384_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000666514.1|443452_443683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000385100.1|444394_444910_-	helix-turn-helix transcriptional regulator	NA	Q2PZB7	Vibrio_virus	51.0	8.6e-06
WP_050492459.1|445030_446173_+	fumarate reductase	NA	NA	NA	NA	NA
WP_000590115.1|446184_446466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_119467809.1|446462_446810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000666514.1|446878_447109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123161351.1|447538_461215_-	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
WP_001910779.1|461199_461661_-	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA	NA
WP_000514481.1|461686_462046_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158142151.1|462459_464565_+	RTX toxin T1SS ABC transporter subunit RtxB	NA	W8CYL7	Bacillus_phage	27.3	2.2e-39
WP_080385663.1|464519_465923_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_001095805.1|465923_468089_+	type I secretion system permease/ATPase	NA	W8CYL7	Bacillus_phage	29.1	8.6e-47
WP_123161353.1|468149_469868_-	response regulator	NA	A0A1V0SGX0	Hokovirus	32.2	8.3e-45
>prophage 43
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	475550	485535	3073750	tRNA	uncultured_virus(33.33%)	10	NA	NA
WP_123161355.1|475550_477923_+	cadmium-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	32.0	2.4e-82
WP_000445305.1|477926_478091_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_032471802.1|478087_478762_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_000622582.1|478851_479604_+	FNR family transcription factor	NA	NA	NA	NA	NA
WP_000029912.1|479733_480681_+	universal stress protein UspE	NA	NA	NA	NA	NA
WP_000126827.1|480807_481740_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	81.1	7.0e-123
WP_000837784.1|481816_482476_-	DUF2987 domain-containing protein	NA	NA	NA	NA	NA
WP_080481426.1|482477_483281_-	glucosaminidase	NA	NA	NA	NA	NA
WP_000175479.1|483270_484116_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001881184.1|484401_485535_+	spermidine/putrescine ABC transporter ATP-binding protein PotA	NA	Q6GZ03	Mycoplasma_phage	37.0	1.3e-30
>prophage 44
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	496814	503242	3073750		Ralstonia_phage(50.0%)	4	NA	NA
WP_123161356.1|496814_498866_-	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	26.9	1.5e-32
WP_001142947.1|498993_499512_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_080004073.1|499709_501284_+	carboxypeptidase M32	NA	NA	NA	NA	NA
WP_000057934.1|501505_503242_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	24.4	5.9e-14
>prophage 45
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	508284	512742	3073750		uncultured_Caudovirales_phage(66.67%)	3	NA	NA
WP_123161359.1|508284_509478_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.7	1.2e-55
WP_080004071.1|509659_510976_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	50.6	1.2e-11
WP_123161360.1|511053_512742_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	54.7	4.4e-14
>prophage 46
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	521546	525476	3073750		Catovirus(100.0%)	1	NA	NA
WP_123161362.1|521546_525476_-	ATP-dependent RNA helicase HrpA	NA	A0A1V0SBU4	Catovirus	30.3	2.6e-57
>prophage 47
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	530124	534902	3073750		Hokovirus(50.0%)	2	NA	NA
WP_123161363.1|530124_532026_+	Hsp70 family protein	NA	A0A1V0SG59	Hokovirus	26.7	1.3e-09
WP_123161364.1|532067_534902_+	hsp70 family protein	NA	A0A2H4UU19	Bodo_saltans_virus	26.5	1.1e-12
>prophage 48
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	542122	557610	3073750		uncultured_Caudovirales_phage(28.57%)	14	NA	NA
WP_000710447.1|542122_542818_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	64.4	4.6e-79
WP_001895443.1|542830_543568_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1B0Z0A9	Vibrio_phage	27.7	5.2e-12
WP_000277400.1|543845_544667_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_032470865.1|544742_545681_-	siroheme synthase	NA	NA	NA	NA	NA
WP_001284567.1|546134_547163_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.0	4.2e-76
WP_000805336.1|547288_548494_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_000190761.1|548496_549594_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_123161366.1|549616_550372_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.9	1.5e-30
WP_001095848.1|550616_551288_+	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	43.3	2.5e-29
WP_000895407.1|551401_551731_+	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA	NA
WP_080281117.1|551796_552081_-	acylphosphatase	NA	NA	NA	NA	NA
WP_123161367.1|552319_553513_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_123161368.1|553555_556486_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	31.3	1.7e-10
WP_123161369.1|557136_557610_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	47.9	9.3e-23
>prophage 49
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	561832	562972	3073750		Bacillus_phage(100.0%)	1	NA	NA
WP_000061367.1|561832_562972_+	two-component system response regulator	NA	W8CYM9	Bacillus_phage	32.4	5.9e-07
>prophage 50
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	570585	572463	3073750		Staphylococcus_phage(100.0%)	1	NA	NA
WP_123161370.1|570585_572463_-	propionyl-CoA synthetase	NA	A0A2H4PQU7	Staphylococcus_phage	33.0	6.2e-70
>prophage 51
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	586551	588060	3073750		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_000248062.1|586551_588060_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.6	5.3e-11
>prophage 52
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	593940	594645	3073750		Alteromonas_phage(100.0%)	1	NA	NA
WP_000070850.1|593940_594645_+	response regulator	NA	A0A1J0GWE0	Alteromonas_phage	25.0	1.0e-04
>prophage 53
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	601625	603257	3073750		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000478919.1|601625_603257_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	31.3	1.5e-32
>prophage 54
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	613103	614480	3073750		Pandoravirus(100.0%)	1	NA	NA
WP_032481218.1|613103_614480_+	aminodeoxychorismate synthase component 1	NA	A0A0B5J984	Pandoravirus	32.5	1.9e-44
>prophage 55
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	618588	627117	3073750	tRNA	Dickeya_phage(20.0%)	6	NA	NA
WP_000083084.1|618588_619776_+	efflux RND transporter periplasmic adaptor subunit	NA	A0A140XAI1	Dickeya_phage	64.2	5.1e-09
WP_000091452.1|619775_621734_+	MacB family efflux pump subunit	NA	G9BWD6	Planktothrix_phage	39.9	5.9e-39
WP_000878677.1|621740_623111_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_000980008.1|623169_623541_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	39.8	8.4e-11
WP_001088886.1|623938_625570_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	25.2	1.5e-16
WP_123161379.1|625716_627117_+|tRNA	asparagine--tRNA ligase	tRNA	A0A1V0SDB6	Indivirus	34.9	1.6e-78
>prophage 56
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	632818	634714	3073750		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_080284503.1|632818_634714_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	44.5	1.9e-26
>prophage 57
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	646093	647716	3073750		Vibrio_phage(100.0%)	1	NA	NA
WP_001904198.1|646093_647716_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	26.3	6.5e-23
>prophage 58
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	656001	656550	3073750		Rhodobacter_phage(100.0%)	1	NA	NA
WP_001195151.1|656001_656550_-	DUF882 domain-containing protein	NA	A0A0K1LLY2	Rhodobacter_phage	36.5	4.6e-05
>prophage 59
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	663631	664282	3073750		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001881029.1|663631_664282_-	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.2	2.5e-34
>prophage 60
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	668412	676149	3073750		Bacillus_virus(33.33%)	4	NA	NA
WP_001281166.1|668412_671097_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	31.8	7.5e-101
WP_000146463.1|671447_672185_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_057552557.1|672633_674919_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2I7S840	Vibrio_phage	69.3	1.6e-309
WP_000331860.1|675015_676149_+	ribonucleotide-diphosphate reductase subunit beta	NA	G9IAA3	Pseudomonas_phage	74.7	1.3e-163
>prophage 61
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	682679	683255	3073750		Shewanella_sp._phage(100.0%)	1	NA	NA
WP_001177583.1|682679_683255_+	nucleoside triphosphate pyrophosphohydrolase family protein	NA	A0A088C537	Shewanella_sp._phage	42.9	1.6e-32
>prophage 62
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	700729	706753	3073750	tRNA	Geobacillus_virus(25.0%)	5	NA	NA
WP_001229260.1|700729_701026_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	41.1	2.4e-13
WP_000672445.1|701464_703852_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	A0A1L3IZU3	BeAn_58058_virus	25.6	3.0e-08
WP_001164214.1|703878_704862_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.7	6.9e-36
WP_123161385.1|705152_705638_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001190450.1|705634_706753_-	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	30.7	1.3e-14
>prophage 63
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	711103	713467	3073750		Yellowstone_lake_phycodnavirus(100.0%)	1	NA	NA
WP_123161386.1|711103_713467_+	DNA polymerase II	NA	A0A0N7KVW0	Yellowstone_lake_phycodnavirus	25.0	2.2e-32
>prophage 64
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	723476	727173	3073750	protease	Catovirus(50.0%)	3	NA	NA
WP_123161389.1|723476_725012_+	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	39.4	4.4e-90
WP_123161390.1|725160_725886_+	DUF3581 domain-containing protein	NA	NA	NA	NA	NA
WP_123161391.1|725961_727173_-|protease	GlyGly-anchored extracellular serine protease VesB	protease	V5LQ17	Emiliania_huxleyi_virus	27.1	1.1e-06
>prophage 65
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	740783	749322	3073750		Bacillus_phage(75.0%)	6	NA	NA
WP_000866469.1|740783_742115_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	39.2	2.6e-22
WP_123161392.1|742373_743636_-	cysteine desulfurase-like protein	NA	NA	NA	NA	NA
WP_001884641.1|743610_744270_-	2OG-Fe dioxygenase family protein	NA	NA	NA	NA	NA
WP_000073135.1|744744_745701_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.9	7.1e-62
WP_000358469.1|745820_747608_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	NA	W8CYL7	Bacillus_phage	26.2	1.1e-28
WP_001205208.1|747600_749322_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	W8CYL7	Bacillus_phage	26.2	1.2e-24
>prophage 66
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	753969	755600	3073750		Acinetobacter_phage(100.0%)	2	NA	NA
WP_080007787.1|753969_754581_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	40.4	3.4e-33
WP_001193368.1|754601_755600_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	37.5	1.8e-52
>prophage 67
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	760725	763176	3073750	tRNA	Serratia_phage(50.0%)	2	NA	NA
WP_001908063.1|760725_761304_-	thymidine kinase	NA	A0A1Z1LZ42	Serratia_phage	56.0	4.1e-57
WP_123161393.1|761400_763176_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	22.8	3.8e-08
>prophage 68
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	769729	770869	3073750		Streptococcus_phage(100.0%)	1	NA	NA
WP_001893876.1|769729_770869_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	47.3	1.4e-88
>prophage 69
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	776667	789325	3073750	protease	Phage_NCTB(16.67%)	11	NA	NA
WP_001880932.1|776667_777603_+	HDOD domain-containing protein	NA	A0A1C3NFB0	Phage_NCTB	21.9	1.3e-07
WP_000948497.1|777623_778529_+	lysine exporter LysO family protein	NA	NA	NA	NA	NA
WP_000826867.1|778717_779227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000253195.1|779336_780983_+	putative pyridoxal-dependent aspartate 1-decarboxylase	NA	S4W1T5	Pandoravirus	27.3	2.3e-20
WP_001093848.1|781290_782145_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_080481347.1|782235_783504_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_000498418.1|783791_784055_+	GrxA family glutaredoxin	NA	A0A2I7SAE2	Vibrio_phage	70.5	2.9e-26
WP_032469407.1|784256_785933_+	transporter	NA	NA	NA	NA	NA
WP_000932414.1|786001_788272_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.8	8.7e-167
WP_071192170.1|788310_788631_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	39.5	1.3e-12
WP_001880921.1|789094_789325_+	cold shock domain-containing protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	1.3e-14
>prophage 70
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	794268	795006	3073750		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_000586508.1|794268_795006_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	A0A2H4UVM0	Bodo_saltans_virus	23.1	1.9e-06
>prophage 71
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	806564	810878	3073750		Bodo_saltans_virus(50.0%)	5	NA	NA
WP_000423486.1|806564_807935_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	6.7e-114
WP_001234239.1|808014_808542_-	DUF3833 domain-containing protein	NA	NA	NA	NA	NA
WP_032471136.1|808538_809105_-	periplasmic protein	NA	NA	NA	NA	NA
WP_001229553.1|809037_809577_-	DUF2878 domain-containing protein	NA	NA	NA	NA	NA
WP_080385645.1|809579_810878_-	class I SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	33.5	3.3e-46
>prophage 72
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	819459	827254	3073750	tRNA	Klosneuvirus(25.0%)	7	NA	NA
WP_123161396.1|819459_820746_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	30.3	5.0e-18
WP_029628330.1|820853_822161_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	43.0	5.8e-91
WP_000073976.1|822264_823614_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	42.1	1.9e-84
WP_001045827.1|823638_824235_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_001892942.1|824330_824960_-	YecA family protein	NA	NA	NA	NA	NA
WP_050503341.1|825116_826088_+|tRNA	tRNA dihydrouridine(16) synthase DusC	tRNA	NA	NA	NA	NA
WP_123161672.1|826120_827254_-	sensor domain-containing diguanylate cyclase	NA	A0A2K8I9Y5	Pseudomonas_phage	31.0	5.9e-07
>prophage 73
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	838481	840445	3073750		Bacillus_virus(50.0%)	2	NA	NA
WP_001887380.1|838481_839492_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.2	8.1e-16
WP_001887378.1|839470_840445_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	3.3e-14
>prophage 74
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	851436	856484	3073750		Tupanvirus(50.0%)	6	NA	NA
WP_071192134.1|851436_852756_-	PAS domain-containing protein	NA	A0A2K9L0Z8	Tupanvirus	24.8	3.0e-10
WP_001964335.1|852766_853351_-	chemotaxis protein CheC	NA	NA	NA	NA	NA
WP_001007798.1|853347_853713_-	response regulator	NA	NA	NA	NA	NA
WP_000215323.1|853747_854890_-	HDOD domain-containing protein	NA	NA	NA	NA	NA
WP_000372794.1|854886_855252_-	Hpt domain-containing protein	NA	NA	NA	NA	NA
WP_123161399.1|855497_856484_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	34.9	6.0e-40
>prophage 75
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	859831	863098	3073750		Mimivirus(100.0%)	1	NA	NA
WP_123161400.1|859831_863098_-	chitinase	NA	A0A1X9VNM7	Mimivirus	25.4	4.2e-21
>prophage 76
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	866544	869510	3073750		uncultured_Caudovirales_phage(50.0%)	2	NA	NA
WP_000936745.1|866544_866886_-	metalloregulator ArsR/SmtB family transcription factor	NA	A0A2H4J145	uncultured_Caudovirales_phage	47.7	3.7e-21
WP_080389971.1|867428_869510_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	30.3	2.3e-12
>prophage 77
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	873969	877161	3073750	protease,transposase	Bodo_saltans_virus(50.0%)	3	NA	NA
WP_000394899.1|873969_875031_-|protease	protease SohB	protease	A0A2H4UUF9	Bodo_saltans_virus	35.7	6.1e-22
WP_001109962.1|875189_875933_+	YciK family oxidoreductase	NA	NA	NA	NA	NA
WP_123161402.1|876201_877161_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	37.1	3.3e-43
>prophage 78
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	880449	885029	3073750		Bacteriophage(33.33%)	5	NA	NA
WP_000120791.1|880449_882528_-	DNA polymerase III subunit gamma/tau	NA	A0A1L2BWV7	Bacteriophage	37.5	3.8e-44
WP_000206217.1|882546_883092_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.8	2.9e-28
WP_001880857.1|883223_883622_-	YbaN family protein	NA	NA	NA	NA	NA
WP_000013199.1|883621_883753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123161403.1|883871_885029_-	response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	27.5	3.0e-06
>prophage 79
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	898698	907522	3073750	tRNA	Catovirus(33.33%)	6	NA	NA
WP_001293736.1|898698_899340_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	38.8	5.1e-32
WP_001909012.1|899516_900665_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_001262546.1|900750_902802_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	29.1	3.7e-60
WP_080004162.1|903027_903921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000169476.1|903993_904755_-	uridine phosphorylase	NA	NA	NA	NA	NA
WP_123161408.1|905215_907522_-	zinc/cadmium/mercury/lead-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	36.8	6.8e-119
>prophage 80
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	912322	914914	3073750		Streptococcus_phage(50.0%)	3	NA	NA
WP_000061075.1|912322_913213_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	30.4	1.9e-24
WP_001209531.1|913201_913543_-	phosphorelay protein LuxU	NA	NA	NA	NA	NA
WP_001953102.1|913546_914914_-	sigma-54-dependent Fis family transcriptional regulator	NA	Q6XM27	Feldmannia_irregularis_virus	28.2	1.2e-06
>prophage 81
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	929534	931049	3073750		Mollivirus(100.0%)	1	NA	NA
WP_000334233.1|929534_931049_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	42.5	1.3e-86
>prophage 82
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	940582	942253	3073750	tRNA	Escherichia_phage(100.0%)	1	NA	NA
WP_123161412.1|940582_942253_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	80.7	2.3e-273
>prophage 83
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	948770	950435	3073750		Mimivirus(100.0%)	1	NA	NA
WP_000337015.1|948770_950435_+	asparagine synthase B	NA	A0A1X9VNR2	Mimivirus	41.8	2.0e-91
>prophage 84
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	955235	957143	3073750		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_032476260.1|955235_957143_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	33.5	1.8e-101
>prophage 85
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	968260	975761	3073750		Serratia_phage(33.33%)	7	NA	NA
WP_057563422.1|968260_970270_-	NAD-dependent DNA ligase LigA	NA	A0A289ZTZ3	Serratia_phage	50.3	1.0e-147
WP_001157059.1|970402_971278_-	cell division protein ZipA	NA	NA	NA	NA	NA
WP_123161417.1|971507_972260_+	sulfate transporter CysZ	NA	NA	NA	NA	NA
WP_000036917.1|972382_973351_+	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	50.5	7.9e-69
WP_000241004.1|973354_973564_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000273061.1|973648_973906_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_123161418.1|974039_975761_+	phosphoenolpyruvate-protein phosphotransferase PtsI	NA	A0A1V0SGR7	Hokovirus	26.5	1.5e-17
>prophage 86
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	979400	980504	3073750		Pseudomonas_phage(100.0%)	1	NA	NA
WP_095467546.1|979400_980504_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	44.1	1.5e-47
>prophage 87
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	984123	986700	3073750	tRNA	Staphylococcus_phage(100.0%)	1	NA	NA
WP_001157865.1|984123_986700_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	43.4	7.7e-188
>prophage 88
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	992424	998641	3073750		Synechococcus_phage(33.33%)	7	NA	NA
WP_001080121.1|992424_993216_+	septal ring lytic transglycosylase RlpA	NA	F5B3X9	Synechococcus_phage	57.1	5.5e-20
WP_000748292.1|993307_994483_+	serine hydrolase	NA	B6DZZ7	Stx2-converting_phage	47.2	3.8e-89
WP_000932180.1|994630_994909_+	YbeD family protein	NA	NA	NA	NA	NA
WP_001889852.1|995087_995747_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_000042590.1|995739_996705_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_001015526.1|996900_997227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000919131.1|997390_998641_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	50.8	4.7e-98
>prophage 89
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1022643	1025574	3073750		Streptococcus_phage(33.33%)	3	NA	NA
WP_033929527.1|1022643_1023198_-	serine acetyltransferase	NA	A0A1L2JYI5	Streptococcus_phage	38.5	5.2e-25
WP_000482532.1|1023194_1024436_-	UDP-N-acetyl-D-mannosamine dehydrogenase	NA	M1HZW8	Acanthocystis_turfacea_Chlorella_virus	28.5	1.1e-25
WP_000756756.1|1024455_1025574_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	28.4	1.6e-25
>prophage 90
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1037293	1038328	3073750		Planktothrix_phage(100.0%)	1	NA	NA
WP_001964190.1|1037293_1038328_+	methionine ABC transporter ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	40.2	1.3e-32
>prophage 91
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1041396	1042242	3073750		Vibrio_phage(100.0%)	1	NA	NA
WP_001964180.1|1041396_1042242_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	39.5	2.5e-42
>prophage 92
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1068657	1074453	3073750		Burkholderia_phage(50.0%)	3	NA	NA
WP_123161424.1|1068657_1072551_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	56.5	7.7e-123
WP_076008421.1|1072547_1072760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123161425.1|1072860_1074453_+	membrane-bound lytic murein transglycosylase MltF	NA	A0A0E3M2X9	Enterobacter_phage	31.0	1.2e-05
>prophage 93
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1080919	1084173	3073750		Cafeteria_roenbergensis_virus(50.0%)	2	NA	NA
WP_000043914.1|1080919_1082065_-	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	33.8	1.3e-22
WP_000516147.1|1082265_1084173_-	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	47.9	1.0e-144
>prophage 94
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1089384	1091710	3073750	integrase	Staphylococcus_phage(50.0%)	2	1080271:1080284	1104459:1104472
1080271:1080284	attL	ATTTCCCAAAATCC	NA	NA	NA	NA
WP_032480645.1|1089384_1089870_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	42.4	6.6e-24
WP_032480643.1|1090471_1091710_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	51.0	1.0e-116
1104459:1104472	attR	GGATTTTGGGAAAT	NA	NA	NA	NA
>prophage 95
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1095420	1107270	3073750		Vibrio_phage(80.0%)	8	NA	NA
WP_123161427.1|1095420_1096464_-	type I-F CRISPR-associated protein Csy3	NA	A0A2D0YRR8	Vibrio_phage	35.2	1.1e-42
WP_032480687.1|1096475_1097417_-	type I-F CRISPR-associated protein Csy2	NA	A0A2I7RCX5	Vibrio_phage	24.1	4.7e-10
WP_050499268.1|1097413_1098568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123161428.1|1098963_1102338_-	type I-F CRISPR-associated helicase Cas3	NA	A0A2I7RCU8	Vibrio_phage	31.1	1.0e-94
WP_000342415.1|1102334_1103324_-	type I-F CRISPR-associated endonuclease Cas1	NA	A0A2D0YFC9	Vibrio_phage	38.0	6.4e-50
WP_000880612.1|1103438_1104233_-	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_001142919.1|1104648_1105167_+	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_123161429.1|1105293_1107270_+	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	26.4	4.2e-32
>prophage 96
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1110665	1116578	3073750	transposase	Campylobacter_phage(60.0%)	7	NA	NA
WP_001117493.1|1110665_1110965_+	type VI secretion system PAAR protein	NA	J9SWA2	Campylobacter_phage	46.4	3.5e-07
WP_123161674.1|1111172_1111961_+	glycosyl hydrolase family 26	NA	NA	NA	NA	NA
WP_001117493.1|1111971_1112271_+	type VI secretion system PAAR protein	NA	J9SWA2	Campylobacter_phage	46.4	3.5e-07
WP_001953033.1|1112478_1113267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001117496.1|1113277_1113469_+	hypothetical protein	NA	A0A1D8EXK8	Campylobacter_phage	45.7	4.6e-05
WP_123161430.1|1114294_1115827_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	42.2	7.0e-112
WP_123161431.1|1115837_1116578_+|transposase	transposase	transposase	K4HZD4	Acidithiobacillus_phage	42.7	1.7e-47
>prophage 97
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1119787	1122928	3073750		Synechococcus_phage(100.0%)	1	NA	NA
WP_001188037.1|1119787_1122928_-	DUF3427 domain-containing protein	NA	G8EY40	Synechococcus_phage	31.5	5.2e-29
>prophage 98
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1146799	1147639	3073750		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_123161438.1|1146799_1147639_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.8	1.1e-10
>prophage 99
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1161813	1164825	3073750		Klosneuvirus(50.0%)	2	NA	NA
WP_000944177.1|1161813_1163277_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.2	1.4e-96
WP_000099120.1|1163484_1164825_+	exodeoxyribonuclease VII large subunit	NA	A0A2H4UVM9	Bodo_saltans_virus	34.7	4.6e-35
>prophage 100
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1174902	1189056	3073750	tRNA	uncultured_Mediterranean_phage(33.33%)	16	NA	NA
WP_001162850.1|1174902_1175331_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
WP_000107234.1|1175534_1176824_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.0	6.5e-34
WP_000872174.1|1177043_1177238_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_001124187.1|1177286_1177625_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_001196556.1|1177638_1179489_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	9.1e-106
WP_001105746.1|1179512_1180028_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_000301571.1|1180076_1180400_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_000331703.1|1180460_1180844_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000775251.1|1180880_1182095_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.8	8.8e-33
WP_080004174.1|1182121_1182688_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_102137067.1|1182757_1183492_-|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
WP_123161443.1|1183670_1184474_+	inositol-1-monophosphatase	NA	NA	NA	NA	NA
WP_000486403.1|1184642_1185590_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	46.4	3.2e-54
WP_001909109.1|1185604_1187458_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_000053137.1|1187479_1187812_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	48.1	2.0e-11
WP_000768200.1|1187916_1189056_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	47.7	3.5e-92
>prophage 101
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1199516	1200338	3073750		Bacillus_phage(100.0%)	1	NA	NA
WP_000286625.1|1199516_1200338_-	phosphate ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	31.2	4.7e-14
>prophage 102
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1209020	1213734	3073750	tRNA	Bacillus_phage(50.0%)	4	NA	NA
WP_000230244.1|1209020_1210322_-	phosphate regulon sensor histidine kinase PhoR	NA	W8CYF6	Bacillus_phage	29.4	3.6e-24
WP_000091117.1|1210343_1211033_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	38.0	1.7e-36
WP_000264258.1|1211268_1212183_+	recombination-associated protein RdgC	NA	A0A2I7RNT5	Vibrio_phage	67.9	6.7e-118
WP_071192808.1|1212333_1213734_+|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	tRNA	Q6DW11	Phage_TP	75.7	3.6e-163
>prophage 103
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1221017	1223591	3073750		Enterobacteria_phage(100.0%)	1	NA	NA
WP_123161447.1|1221017_1223591_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	34.3	7.6e-127
>prophage 104
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1232928	1241638	3073750		Pseudomonas_phage(25.0%)	6	NA	NA
WP_119567010.1|1232928_1234875_-	murein transglycosylase	NA	K4NWI2	Pseudomonas_phage	41.0	1.5e-18
WP_123161449.1|1235236_1236904_+	energy-dependent translational throttle protein EttA	NA	A0A2K9L3Z8	Tupanvirus	27.8	1.1e-38
WP_119567009.1|1237014_1237446_+	PilZ domain-containing protein	NA	NA	NA	NA	NA
WP_119567008.1|1237506_1238634_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_000747931.1|1238646_1239720_-	3-deoxy-7-phosphoheptulonate synthase	NA	A0A2I6UFP9	Klebsiella_phage	48.6	1.8e-82
WP_000364246.1|1239961_1241638_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	55.7	2.5e-171
>prophage 105
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1249904	1252754	3073750	tRNA	Megavirus(100.0%)	1	NA	NA
WP_000006089.1|1249904_1252754_-|tRNA	isoleucine--tRNA ligase	tRNA	K7YVP8	Megavirus	26.7	3.0e-84
>prophage 106
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1259020	1263776	3073750		Vibrio_phage(50.0%)	4	NA	NA
WP_001250352.1|1259020_1259872_-	thymidylate synthase	NA	H9EB68	Vibrio_phage	83.0	4.7e-142
WP_001135560.1|1259881_1260697_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_001019423.1|1260725_1261520_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_000952227.1|1261529_1263776_-	phosphoenolpyruvate--protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	26.1	9.3e-12
>prophage 107
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1269318	1281335	3073750	tRNA	Bacillus_phage(33.33%)	10	NA	NA
WP_000128764.1|1269318_1270851_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	37.0	6.0e-87
WP_010895430.1|1270881_1271980_-	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	39.7	5.4e-05
WP_032476875.1|1272149_1273463_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_032476874.1|1273771_1274494_+|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_071192336.1|1274581_1275853_+	ATP-dependent RNA helicase SrmB	NA	A0A1V0SIR5	Klosneuvirus	34.5	2.1e-53
WP_000108381.1|1275974_1277564_-	peptide chain release factor 3	NA	D0R0F5	Streptococcus_phage	26.4	4.4e-32
WP_000160067.1|1277773_1279831_+	EAL domain-containing protein	NA	A0A127AWB9	Bacillus_phage	34.3	5.3e-14
WP_001893505.1|1279819_1280305_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_000953213.1|1280265_1280673_-	DNA polymerase III subunit psi	NA	NA	NA	NA	NA
WP_001885746.1|1280783_1281335_-	N-acetyltransferase	NA	A0A1P8CWJ6	Bacillus_phage	32.2	4.3e-19
>prophage 108
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1300476	1303335	3073750	protease	Pandoravirus(50.0%)	2	NA	NA
WP_000913079.1|1300476_1301313_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	33.0	2.2e-19
WP_001885740.1|1301379_1303335_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	A0A0P0BXI2	Ostreococcus_lucimarinus_virus	44.4	2.4e-120
>prophage 109
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1309521	1315574	3073750		Corynebacterium_phage(33.33%)	4	NA	NA
WP_000949649.1|1309521_1310823_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A1W6JQH9	Corynebacterium_phage	37.8	2.0e-11
WP_000494538.1|1310904_1314024_-	multidrug efflux RND transporter permease subunit VexF	NA	S5VTK5	Leptospira_phage	22.6	4.0e-53
WP_057557523.1|1314034_1315135_-	multidrug efflux RND transporter periplasmic adaptor subunit VexE	NA	NA	NA	NA	NA
WP_000005741.1|1315232_1315574_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	48.2	8.5e-26
>prophage 110
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1319797	1323187	3073750		Feldmannia_irregularis_virus(100.0%)	1	NA	NA
WP_001963792.1|1319797_1323187_+	response regulator	NA	Q6XLV6	Feldmannia_irregularis_virus	24.8	3.0e-22
>prophage 111
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1327954	1328938	3073750		Bacillus_virus(100.0%)	1	NA	NA
WP_000211036.1|1327954_1328938_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.6	1.0e-15
>prophage 112
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1337194	1343862	3073750		Streptococcus_phage(33.33%)	5	NA	NA
WP_000589188.1|1337194_1338607_+	phosphoglucomutase/phosphomannomutase family protein	NA	A0A1X9I671	Streptococcus_phage	26.5	1.5e-28
WP_001277481.1|1338737_1339769_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.1	9.8e-25
WP_032473426.1|1339768_1341394_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_000735496.1|1341477_1342491_-	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000423542.1|1342632_1343862_-	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	36.8	4.0e-57
>prophage 113
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1352651	1355114	3073750		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_123161458.1|1352651_1355114_-	ATP-dependent helicase HrpB	NA	A0A2H4UU36	Bodo_saltans_virus	26.3	4.1e-29
>prophage 114
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1359170	1360544	3073750		Bacillus_virus(100.0%)	1	NA	NA
WP_001062038.1|1359170_1360544_+	polynucleotide adenylyltransferase PcnB	NA	G3MAR3	Bacillus_virus	38.2	4.3e-28
>prophage 115
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1363572	1373862	3073750	protease	Anomala_cuprea_entomopoxvirus(20.0%)	11	NA	NA
WP_000271072.1|1363572_1364490_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.0	1.8e-22
WP_000484915.1|1364869_1366516_-	SulP family inorganic anion transporter	NA	NA	NA	NA	NA
WP_001114117.1|1366663_1367332_+	carbonate dehydratase	NA	NA	NA	NA	NA
WP_000683351.1|1367406_1367940_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	40.0	6.2e-15
WP_000340100.1|1368235_1368847_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000131549.1|1369055_1369922_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	46.3	1.6e-52
WP_001015478.1|1369991_1371797_+	penicillin-binding protein activator	NA	NA	NA	NA	NA
WP_001893625.1|1371783_1372152_+	YraN family protein	NA	NA	NA	NA	NA
WP_000887295.1|1372155_1372746_+	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	33.3	2.9e-13
WP_000836325.1|1372748_1373318_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_001892066.1|1373385_1373862_-|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	44.7	3.1e-26
>prophage 116
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1380399	1383006	3073750	protease	uncultured_Mediterranean_phage(100.0%)	2	NA	NA
WP_123161460.1|1380399_1381770_+|protease	DegQ family serine endoprotease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	33.6	4.5e-09
WP_000911601.1|1381947_1383006_+	outer membrane-stress sensor serine endopeptidase DegS	NA	A0A1B1IRD3	uncultured_Mediterranean_phage	31.5	1.2e-09
>prophage 117
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1400619	1408647	3073750	tRNA	Vibrio_phage(20.0%)	7	NA	NA
WP_000906485.1|1400619_1400817_-	carbon storage regulator CsrA	NA	A0A2I7RT00	Vibrio_phage	66.7	4.0e-12
WP_002046435.1|1400908_1402096_-	aspartate kinase	NA	NA	NA	NA	NA
WP_000481018.1|1402299_1404882_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	37.0	1.6e-76
WP_000006846.1|1405054_1405513_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_000344154.1|1405645_1406710_-	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	60.4	1.9e-111
WP_000853808.1|1406843_1407350_-	nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	42.0	2.4e-24
WP_123161462.1|1407516_1408647_-	sulfate/molybdate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.3e-34
>prophage 118
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1411704	1479090	3073750	transposase,integrase,tRNA,protease	uncultured_Mediterranean_phage(13.33%)	55	1434761:1434778	1459345:1459362
WP_123161464.1|1411704_1412592_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	40.8	4.6e-55
WP_123161675.1|1412859_1415448_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.9e-33
WP_000116735.1|1415544_1416552_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_123161465.1|1416625_1417561_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000002982.1|1417560_1418187_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_001883363.1|1418179_1418971_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.6	8.4e-69
WP_044126956.1|1418933_1420019_-|tRNA	tRNA pseudouridine(13) synthase TruD	tRNA	NA	NA	NA	NA
WP_000619207.1|1420048_1420525_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_123161466.1|1420521_1421220_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_001883356.1|1421216_1421507_-	cell division protein FtsB	NA	NA	NA	NA	NA
WP_000119811.1|1421615_1422419_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000627006.1|1422415_1422922_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_001885691.1|1422918_1423308_-	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA	NA
WP_000188026.1|1423460_1424087_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_001931970.1|1424135_1424948_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_001963746.1|1425100_1426120_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	57.4	1.6e-107
WP_001145625.1|1426360_1426576_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_001173896.1|1426605_1427049_+	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	43.8	4.6e-24
WP_001963741.1|1427138_1428902_+	DNA primase	NA	A0A1S5RG58	Helicobacter_phage	30.7	8.5e-45
WP_000372618.1|1429000_1430878_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	32.9	1.5e-34
WP_000953518.1|1431545_1433306_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000029170.1|1433562_1434642_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
1434761:1434778	attL	AATAAAGTATCATACTAA	NA	NA	NA	NA
WP_055043671.1|1434836_1435478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_055043672.1|1435493_1436492_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_148039502.1|1436508_1436844_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114733206.1|1436923_1437520_+	sce7726 family protein	NA	NA	NA	NA	NA
WP_123161430.1|1437766_1439299_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	42.2	7.0e-112
WP_123161431.1|1439309_1440050_+|transposase	transposase	transposase	K4HZD4	Acidithiobacillus_phage	42.7	1.7e-47
WP_055043675.1|1441171_1442128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114733205.1|1442231_1443827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114733204.1|1443784_1445329_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_055043678.1|1445329_1446967_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_055043679.1|1446963_1449054_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_055043680.1|1449037_1449868_-|transposase	heteromeric transposase endonuclease subunit TnsA	transposase	NA	NA	NA	NA
WP_123161467.1|1450319_1451597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123161468.1|1451601_1455123_-	hypothetical protein	NA	NA	NA	NA	NA
WP_055043683.1|1455049_1455706_-	DUF4194 domain-containing protein	NA	NA	NA	NA	NA
WP_055043684.1|1455718_1457137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_141237667.1|1457260_1458088_+	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_032481385.1|1459398_1461231_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1HRE7	Paramecium_bursaria_Chlorella_virus	45.1	8.1e-131
1459345:1459362	attR	TTAGTATGATACTTTATT	NA	NA	NA	NA
WP_001883308.1|1461293_1462076_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_000751457.1|1462491_1463904_+	pyruvate kinase PykF	NA	NA	NA	NA	NA
WP_001883307.1|1464439_1465156_-	oxidative stress defense protein	NA	NA	NA	NA	NA
WP_032481384.1|1465235_1466132_-	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_001104704.1|1466296_1466932_+	amino acid transporter	NA	NA	NA	NA	NA
WP_000896750.1|1466995_1467859_-	small-conductance mechanosensitive channel MscS	NA	NA	NA	NA	NA
WP_012705987.1|1467881_1467968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000034368.1|1468154_1469231_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_000111267.1|1469386_1470550_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000946626.1|1470698_1471724_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_123161469.1|1471875_1473834_-	ligand-gated channel protein	NA	A0A0P0I887	Acinetobacter_phage	32.7	2.6e-10
WP_032481381.1|1473978_1474875_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_080286519.1|1474960_1477045_-	transketolase	NA	NA	NA	NA	NA
WP_000985183.1|1477322_1478480_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	61.5	6.9e-128
WP_000251283.1|1478601_1479090_+|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
>prophage 119
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1482879	1484160	3073750	tRNA	Serratia_phage(100.0%)	1	NA	NA
WP_001088167.1|1482879_1484160_-|tRNA	tyrosine--tRNA ligase	tRNA	A0A1S6UA79	Serratia_phage	40.8	1.7e-79
>prophage 120
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1495852	1499369	3073750		Geobacillus_virus(50.0%)	2	NA	NA
WP_001230170.1|1495852_1496980_+	membrane-bound lytic murein transglycosylase MltC	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	3.1e-08
WP_000769923.1|1497743_1499369_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.4	9.6e-27
>prophage 121
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1507450	1508907	3073750		Rhizobium_phage(50.0%)	2	NA	NA
WP_119299365.1|1507450_1508260_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	V9QL63	Rhizobium_phage	28.8	5.5e-07
WP_071192323.1|1508409_1508907_-	type 3 dihydrofolate reductase	NA	V9LZM6	Vibrio_phage	42.7	1.3e-30
>prophage 122
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1512512	1513484	3073750		Indivirus(100.0%)	1	NA	NA
WP_000345931.1|1512512_1513484_+	octaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	24.2	2.2e-10
>prophage 123
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1521388	1521826	3073750		Morganella_phage(100.0%)	1	NA	NA
WP_000276487.1|1521388_1521826_+	universal stress protein	NA	A0A1W6JNV4	Morganella_phage	31.5	7.8e-08
>prophage 124
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1538471	1539515	3073750		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
WP_000473776.1|1538471_1539515_-	rod shape-determining protein	NA	F2Y0P3	Organic_Lake_phycodnavirus	20.4	2.1e-06
>prophage 125
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1547208	1547763	3073750		Vibrio_phage(100.0%)	1	NA	NA
WP_000738707.1|1547208_1547763_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	A0A088F7U0	Vibrio_phage	35.1	4.6e-05
>prophage 126
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1552396	1553242	3073750		Pseudomonas_phage(100.0%)	1	NA	NA
WP_000281359.1|1552396_1553242_-	AAA family ATPase	NA	J9SVV1	Pseudomonas_phage	28.6	2.6e-07
>prophage 127
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1559485	1564978	3073750		Vibrio_phage(33.33%)	4	NA	NA
WP_000168289.1|1559485_1560019_-	single-stranded DNA-binding protein	NA	R9TR60	Vibrio_phage	90.6	3.8e-57
WP_001188318.1|1560310_1560955_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000972853.1|1561124_1562000_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	47.2	1.5e-63
WP_000357696.1|1562155_1564978_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	56.9	0.0e+00
>prophage 128
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1569915	1577713	3073750	transposase	Acidithiobacillus_phage(50.0%)	5	NA	NA
WP_032476698.1|1569915_1573596_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	83.6	2.0e-24
WP_000118232.1|1573792_1575127_+	sodium:proton antiporter	NA	A0A2H4J178	uncultured_Caudovirales_phage	39.8	5.1e-42
WP_123161484.1|1575259_1575442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123161431.1|1575429_1576170_-|transposase	transposase	transposase	K4HZD4	Acidithiobacillus_phage	42.7	1.7e-47
WP_123161430.1|1576180_1577713_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	42.2	7.0e-112
>prophage 129
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1603001	1604408	3073750		Salmonella_phage(100.0%)	1	NA	NA
WP_000774910.1|1603001_1604408_-	replicative DNA helicase	NA	A0A1B0VG30	Salmonella_phage	72.1	5.3e-183
>prophage 130
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1608058	1613716	3073750		Vibrio_phage(33.33%)	7	NA	NA
WP_000031644.1|1608058_1609243_-	elongation factor Tu	NA	M4M9V7	Vibrio_phage	60.5	5.8e-05
WP_000101804.1|1609365_1611462_-	elongation factor G	NA	A0A1S5SF82	Streptococcus_phage	26.1	1.3e-55
WP_001138050.1|1611537_1612008_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_000201237.1|1612123_1612498_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_000902450.1|1612682_1612958_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA	NA
WP_001044895.1|1612967_1613324_-	sulfurtransferase complex subunit TusC	NA	NA	NA	NA	NA
WP_000803699.1|1613320_1613716_-	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	40.7	1.4e-16
>prophage 131
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1621969	1625683	3073750		Wolbachia_phage(50.0%)	2	NA	NA
WP_000155467.1|1621969_1623931_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	31.2	1.5e-61
WP_080007740.1|1623937_1625683_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A067ZJB6	Vibrio_phage	32.7	3.1e-15
>prophage 132
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1629777	1630323	3073750		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_000010185.1|1629777_1630323_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	41.4	1.8e-30
>prophage 133
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1642763	1651099	3073750		Vibrio_phage(50.0%)	2	NA	NA
WP_000653995.1|1642763_1646969_-	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	27.4	3.4e-68
WP_000263118.1|1647073_1651099_-	DNA-directed RNA polymerase subunit beta	NA	A0A2P0VMZ3	Tetraselmis_virus	26.4	2.6e-20
>prophage 134
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1654962	1657786	3073750		Vibrio_phage(50.0%)	2	NA	NA
WP_000031644.1|1654962_1656147_-	elongation factor Tu	NA	M4M9V7	Vibrio_phage	60.5	5.8e-05
WP_080389944.1|1656658_1657786_+	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	32.2	9.3e-29
>prophage 135
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1669519	1671136	3073750		Tupanvirus(100.0%)	1	NA	NA
WP_001963463.1|1669519_1671136_+	S8 family peptidase	NA	A0A2K9L570	Tupanvirus	35.9	6.4e-31
>prophage 136
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1677754	1680808	3073750		Vibrio_phage(50.0%)	5	NA	NA
WP_032468998.1|1677754_1677949_+	AlpA family transcriptional regulator	NA	A0A1V0E8E5	Vibrio_phage	52.5	2.3e-12
WP_000025566.1|1677997_1678435_-	DUF2787 domain-containing protein	NA	NA	NA	NA	NA
WP_000615267.1|1678473_1678923_-	DUF2787 domain-containing protein	NA	NA	NA	NA	NA
WP_001208958.1|1678919_1679387_-	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_000034199.1|1679704_1680808_+	AAA family ATPase	NA	A0A077SLJ9	Escherichia_phage	24.0	4.0e-16
>prophage 137
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1684471	1686130	3073750		Klosneuvirus(100.0%)	1	NA	NA
WP_000940061.1|1684471_1686130_+	type I restriction-modification system subunit M	NA	A0A1V0SLK8	Klosneuvirus	29.2	7.3e-30
>prophage 138
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1690806	1692066	3073750	integrase	Stx1_converting_phage(100.0%)	1	1683991:1684005	1693938:1693952
1683991:1684005	attL	AAAATGGTCGAAAAC	NA	NA	NA	NA
WP_000166748.1|1690806_1692066_-|integrase	site-specific integrase	integrase	A0A1U9AJ52	Stx1_converting_phage	25.3	5.2e-20
WP_000166748.1|1690806_1692066_-|integrase	site-specific integrase	integrase	A0A1U9AJ52	Stx1_converting_phage	25.3	5.2e-20
1693938:1693952	attR	GTTTTCGACCATTTT	NA	NA	NA	NA
>prophage 139
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1695303	1697990	3073750		Salicola_phage(50.0%)	3	NA	NA
WP_000184359.1|1695303_1696164_-	RNA polymerase sigma factor RpoH	NA	A0A248SJA5	Salicola_phage	37.7	2.3e-43
WP_000279341.1|1696333_1697326_-	cell division protein FtsX	NA	NA	NA	NA	NA
WP_000617864.1|1697315_1697990_-	cell division ATP-binding protein FtsE	NA	A0A2H4PQG7	Staphylococcus_phage	27.2	4.3e-13
>prophage 140
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1702877	1703348	3073750		Clostridium_phage(100.0%)	1	NA	NA
WP_000224703.1|1702877_1703348_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	34.3	2.1e-19
>prophage 141
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1713198	1714134	3073750		Virus_Rctr41k(100.0%)	1	NA	NA
WP_000786723.1|1713198_1714134_-	tyrosine recombinase XerC	NA	A0A1P8DJJ6	Virus_Rctr41k	30.5	3.7e-15
>prophage 142
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1730251	1733056	3073750		Clostridium_phage(100.0%)	1	NA	NA
WP_123161495.1|1730251_1733056_-	DNA polymerase I	NA	D9ZNH3	Clostridium_phage	29.6	7.9e-53
>prophage 143
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1745408	1746038	3073750		Enterobacteria_phage(100.0%)	1	NA	NA
WP_000803693.1|1745408_1746038_+	repressor LexA	NA	A5LH73	Enterobacteria_phage	41.9	1.6e-09
>prophage 144
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1749788	1755965	3073750		uncultured_Mediterranean_phage(33.33%)	7	NA	NA
WP_000099888.1|1749788_1750541_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	31.3	9.9e-27
WP_000459621.1|1750629_1751031_-	Sec-independent protein translocase subunit TatB	NA	NA	NA	NA	NA
WP_000508969.1|1751034_1751283_-	twin-arginine translocase subunit TatA	NA	NA	NA	NA	NA
WP_032471565.1|1751342_1752977_-	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	G9E4X0	Ostreococcus_lucimarinus_virus	29.8	1.4e-38
WP_000054251.1|1752973_1753597_-	SCP2 domain-containing protein	NA	NA	NA	NA	NA
WP_000132703.1|1753605_1754388_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_001198576.1|1754432_1755965_-	DNA recombination protein RmuC	NA	R9RFD7	Alteromonas_phage	70.8	5.9e-18
>prophage 145
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1767935	1771177	3073750	transposase	Acinetobacter_phage(50.0%)	2	NA	NA
WP_032471570.1|1767935_1769729_+	aminopeptidase P family protein	NA	A0A0P0I8D7	Acinetobacter_phage	36.0	6.3e-96
WP_123161500.1|1769823_1771177_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	49.3	1.0e-69
>prophage 146
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1777752	1778133	3073750		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000006443.1|1777752_1778133_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	35.7	4.3e-10
>prophage 147
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1790297	1794154	3073750	tRNA	Thermus_phage(33.33%)	4	NA	NA
WP_032471373.1|1790297_1791413_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	33.0	1.1e-32
WP_080285359.1|1791412_1792588_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000115010.1|1792679_1793189_+	peptide deformylase	NA	A0A2I7R586	Vibrio_phage	41.0	1.8e-16
WP_000083535.1|1793206_1794154_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.5	2.9e-07
>prophage 148
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1807920	1809567	3073750		Micromonas_pusilla_virus(100.0%)	1	NA	NA
WP_000145261.1|1807920_1809567_+	acetolactate synthase 2 catalytic subunit	NA	G8DDL3	Micromonas_pusilla_virus	31.1	6.3e-66
>prophage 149
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1815911	1816711	3073750	transposase	Dickeya_phage(50.0%)	2	NA	NA
WP_000143766.1|1815911_1816160_+	sulfurtransferase TusA	NA	A0A140XB86	Dickeya_phage	69.4	9.8e-08
WP_000503164.1|1816273_1816711_-|transposase	IS200/IS605-like element IS1004 family transposase	transposase	Q331U4	Clostridium_botulinum_C_phage	40.8	1.9e-22
>prophage 150
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1822918	1829246	3073750		Synechococcus_phage(33.33%)	6	NA	NA
WP_001261062.1|1822918_1823356_-	Hsp20 family protein	NA	A0A0E3HCM0	Synechococcus_phage	33.1	6.0e-16
WP_000043135.1|1823631_1823748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001884356.1|1823757_1824249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070026.1|1824598_1827016_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.7	9.7e-116
WP_001131368.1|1827036_1828128_-	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_000673169.1|1828145_1829246_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	31.7	2.9e-51
>prophage 151
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1832510	1834220	3073750		Planktothrix_phage(50.0%)	4	NA	NA
WP_000593853.1|1832510_1833248_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.1	2.6e-32
WP_000044781.1|1833489_1833627_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_001884349.1|1833639_1833996_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_001886301.1|1833962_1834220_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	57.8	5.4e-17
>prophage 152
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1837506	1838724	3073750	integrase	unidentified_phage(100.0%)	1	1833688:1833702	1845042:1845056
1833688:1833702	attL	CATTATCAAAAAGTC	NA	NA	NA	NA
WP_000868887.1|1837506_1838724_+|integrase	site-specific integrase	integrase	H7BUI8	unidentified_phage	28.3	6.3e-15
WP_000868887.1|1837506_1838724_+|integrase	site-specific integrase	integrase	H7BUI8	unidentified_phage	28.3	6.3e-15
1845042:1845056	attR	GACTTTTTGATAATG	NA	NA	NA	NA
>prophage 153
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1855826	1857488	3073750		Bacillus_phage(100.0%)	1	NA	NA
WP_000562220.1|1855826_1857488_-	ATP-dependent helicase	NA	S5MMD7	Bacillus_phage	22.8	7.1e-09
>prophage 154
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1863119	1868835	3073750	integrase	Burkholderia_phage(33.33%)	6	1857550:1857562	1872947:1872959
1857550:1857562	attL	TGTTCGCCAGCAA	NA	NA	NA	NA
WP_001072145.1|1863119_1863704_-	recombinase family protein	NA	E5FFF9	Burkholderia_phage	58.1	5.5e-49
WP_000845039.1|1863977_1864991_-|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
WP_001261740.1|1865136_1865928_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA	NA
WP_000679427.1|1866091_1866439_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
WP_001747810.1|1866432_1867404_+	dihydropteroate synthase	NA	NA	NA	NA	NA
WP_001747811.1|1867620_1868835_+	chloramphenicol/florfenicol efflux MFS transporter FloR	NA	S4TR35	Salmonella_phage	28.7	4.2e-19
1872947:1872959	attR	TTGCTGGCGAACA	NA	NA	NA	NA
>prophage 155
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1874468	1878631	3073750	transposase	Escherichia_phage(100.0%)	6	NA	NA
WP_001931474.1|1874468_1875335_+	PSE family carbenicillin-hydrolyzing class A beta-lactamase CARB-2	NA	A0A077SL40	Escherichia_phage	44.1	4.8e-57
WP_000679427.1|1875551_1875899_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
WP_000259031.1|1875892_1876732_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA	NA
WP_000376623.1|1876859_1877360_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_004152787.1|1877342_1877483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001389365.1|1877866_1878631_+|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
>prophage 156
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1883194	1884876	3073750		Natrialba_phage(50.0%)	2	NA	NA
WP_000516546.1|1883194_1883968_+	ParA family protein	NA	Q8JL10	Natrialba_phage	31.4	8.7e-18
WP_000166627.1|1883994_1884876_+	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHY8	Gordonia_phage	36.6	2.8e-12
>prophage 157
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1892260	1893622	3073750		Tupanvirus(100.0%)	1	NA	NA
WP_001892013.1|1892260_1893622_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	32.6	6.2e-27
>prophage 158
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1899585	1900218	3073750		Streptococcus_phage(100.0%)	1	NA	NA
WP_123161507.1|1899585_1900218_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	38.9	9.2e-26
>prophage 159
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1914030	1915244	3073750	transposase	Shigella_phage(100.0%)	1	NA	NA
WP_123161509.1|1914030_1915244_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	65.1	2.6e-117
>prophage 160
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1923342	1929181	3073750		Bacillus_phage(50.0%)	5	NA	NA
WP_000773968.1|1923342_1925358_+	DNA helicase Rep	NA	A7KV33	Bacillus_phage	38.0	1.8e-115
WP_000367639.1|1925425_1925833_-	cytochrome c5 family protein	NA	NA	NA	NA	NA
WP_080007244.1|1926964_1927174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012705975.1|1927165_1927333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000054467.1|1927465_1929181_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.8	1.9e-20
>prophage 161
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1936698	1954163	3073750		Bacillus_phage(33.33%)	12	NA	NA
WP_000070216.1|1936698_1938741_+	oligopeptidase A	NA	A0A1V0SID3	Klosneuvirus	24.8	2.2e-52
WP_002030505.1|1938878_1941050_+	DNA helicase II	NA	A7KV33	Bacillus_phage	37.6	3.8e-119
WP_001004615.1|1941787_1942456_-	LysE family translocator	NA	NA	NA	NA	NA
WP_001884114.1|1942530_1943343_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_080033166.1|1943490_1945257_-	gamma-glutamyltransferase	NA	Q5GF27	Diachasmimorpha_longicaudata_entomopoxvirus	25.9	2.6e-09
WP_001907173.1|1945418_1946327_-	EamA family transporter RarD	NA	NA	NA	NA	NA
WP_032481529.1|1946487_1948323_+	ATP-dependent DNA helicase RecQ	NA	J2YAJ8	Acanthamoeba_polyphaga_lentillevirus	36.5	1.1e-82
WP_000807266.1|1948315_1948615_+	DUF3630 family protein	NA	NA	NA	NA	NA
WP_123161511.1|1948770_1949148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123161512.1|1949183_1951019_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.5	1.8e-29
WP_123161513.1|1951090_1953247_+	TonB-dependent siderophore receptor FhuA	NA	NA	NA	NA	NA
WP_000487055.1|1953377_1954163_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.8	1.5e-09
>prophage 162
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1968115	1974794	3073750		Methanothermobacter_phage(25.0%)	8	NA	NA
WP_123161516.1|1968115_1969315_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.2	1.7e-41
WP_080289611.1|1969482_1971177_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.9	2.6e-30
WP_000053459.1|1971288_1971963_+	JAB domain-containing protein	NA	NA	NA	NA	NA
WP_000091952.1|1972257_1972494_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_001051801.1|1972507_1972675_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_001886174.1|1972895_1973384_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123161517.1|1973393_1974203_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	A0A127AWE5	Bacillus_phage	27.0	3.4e-17
WP_000078886.1|1974299_1974794_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	40.1	1.8e-24
>prophage 163
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1978735	1984941	3073750		Pseudomonas_phage(25.0%)	5	NA	NA
WP_123161519.1|1978735_1980730_+	acyltransferase	NA	B5WZU0	Pseudomonas_phage	32.5	1.4e-59
WP_123161520.1|1980932_1981631_-	CatB-related O-acetyltransferase	NA	A0A2R8FE91	Brazilian_cedratvirus	46.5	1.6e-15
WP_032475026.1|1981676_1982621_-	LPS biosynthesis protein	NA	NA	NA	NA	NA
WP_123161521.1|1982617_1983361_-	capsular biosynthesis protein	NA	M1I080	Acanthocystis_turfacea_Chlorella_virus	27.2	5.0e-15
WP_123161522.1|1983357_1984941_-	capsular biosynthesis protein	NA	B2ZYD9	Ralstonia_phage	30.3	1.1e-46
>prophage 164
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1988619	1989348	3073750		Synechococcus_phage(100.0%)	1	NA	NA
WP_032473955.1|1988619_1989348_+	glycosyl transferase	NA	A0A1D8KNF8	Synechococcus_phage	32.4	1.1e-17
>prophage 165
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	1993081	2015597	3073750	protease,transposase	Enterobacteria_phage(18.18%)	21	NA	NA
WP_123161529.1|1993081_1994026_-	ADP-glyceromanno-heptose 6-epimerase	NA	R9S880	Prochlorococcus_phage	35.2	2.8e-34
WP_123161530.1|1994236_1995367_+	LPS chain length-determining protein	NA	NA	NA	NA	NA
WP_123161531.1|1995402_1996467_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	52.5	9.5e-100
WP_123161532.1|1996499_1997381_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	67.4	1.5e-111
WP_123161533.1|1997377_1997776_+	WxcM-like domain-containing protein	NA	NA	NA	NA	NA
WP_019827648.1|1997775_1998237_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_123161534.1|1998243_1999383_+	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	E5ES42	Bathycoccus_sp._RCC1105_virus	29.4	8.2e-41
WP_123161535.1|1999379_2001176_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.4	3.5e-22
WP_123161536.1|2001172_2002021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123161537.1|2002017_2003037_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_158142148.1|2003248_2004136_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123161539.1|2004128_2005166_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI8	Catovirus	36.1	4.1e-39
WP_123161540.1|2005165_2006272_+	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_000734418.1|2006288_2007419_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	47.8	1.2e-100
WP_123161541.1|2007468_2008677_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_123161542.1|2008673_2009288_+	sugar transferase	NA	NA	NA	NA	NA
WP_101411229.1|2009277_2009940_+	acetyltransferase	NA	NA	NA	NA	NA
WP_123161543.1|2009942_2011118_+	DegT/DnrJ/EryC1/StrS aminotransferase family protein	NA	A0A2K9L470	Tupanvirus	48.3	6.6e-102
WP_123161544.1|2011148_2013089_+	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	23.9	1.1e-16
WP_123161545.1|2013165_2013927_-|protease	serine protease	protease	M4M9R3	Vibrio_phage	30.6	3.0e-15
WP_123161546.1|2014208_2015597_-|transposase	IS4 family transposase	transposase	Q9JMP3	Wolbachia_phage	27.6	3.8e-48
>prophage 166
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2028628	2031496	3073750		Catovirus(100.0%)	3	NA	NA
WP_158142149.1|2028628_2029636_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	30.2	1.3e-08
WP_123161553.1|2029642_2030704_+	EpsG family protein	NA	NA	NA	NA	NA
WP_123161554.1|2030713_2031496_+	glycosyltransferase family 25 protein	NA	A0A1V0SAK9	Catovirus	23.1	3.8e-05
>prophage 167
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2043183	2047231	3073750		Bacillus_phage(50.0%)	4	NA	NA
WP_001044507.1|2043183_2043456_+	DNA-binding protein HU-alpha	NA	A7KV42	Bacillus_phage	57.8	1.7e-21
WP_001886204.1|2043456_2044191_+	DUF1481 domain-containing protein	NA	NA	NA	NA	NA
WP_123161561.1|2044290_2045580_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_123161562.1|2045638_2047231_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	49.7	3.7e-71
>prophage 168
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2054076	2055747	3073750		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_080389207.1|2054076_2055747_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	83.1	3.5e-16
>prophage 169
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2074106	2076056	3073750		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001287247.1|2074106_2076056_-	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	37.0	2.5e-85
>prophage 170
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2080262	2087084	3073750		Tupanvirus(33.33%)	4	NA	NA
WP_123161567.1|2080262_2083706_+	hybrid sensor histidine kinase/response regulator	NA	A0A2K9L5I4	Tupanvirus	25.0	2.0e-13
WP_000076049.1|2083828_2085322_-	guanosine-5'-triphosphate,3'-diphosphate diphosphatase	NA	NA	NA	NA	NA
WP_000750771.1|2085329_2086646_-	ATP-dependent RNA helicase RhlB	NA	E3T5E1	Cafeteria_roenbergensis_virus	31.5	9.2e-44
WP_001280783.1|2086757_2087084_+	thioredoxin TrxA	NA	A0A1J0GW78	Streptomyces_phage	40.2	7.6e-16
>prophage 171
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2109508	2115198	3073750		Ectocarpus_siliculosus_virus(50.0%)	5	NA	NA
WP_080390049.1|2109508_2110573_-	nitrogen regulation protein NR(II)	NA	Q8QKV7	Ectocarpus_siliculosus_virus	26.0	5.6e-07
WP_000099250.1|2110705_2111296_-	DUF4124 domain-containing protein	NA	NA	NA	NA	NA
WP_000110150.1|2111472_2112882_-	glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_000244709.1|2113026_2113350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001965892.1|2113368_2115198_+	translational GTPase TypA	NA	A0A1S5SF82	Streptococcus_phage	34.9	1.2e-22
>prophage 172
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2120310	2126779	3073750		Staphylococcus_phage(50.0%)	5	NA	NA
WP_000217604.1|2120310_2121939_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	49.6	1.1e-139
WP_001884060.1|2122275_2123166_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_000098851.1|2123184_2123562_-	ribosome-associated heat shock protein Hsp15	NA	NA	NA	NA	NA
WP_000394675.1|2123791_2124709_+	type II secretion system protein GspC	NA	NA	NA	NA	NA
WP_000878557.1|2124754_2126779_+	type II secretion system secretin GspD	NA	G4WZN6	Enterobacteria_phage	28.8	4.0e-30
>prophage 173
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2148461	2149943	3073750		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000063411.1|2148461_2149943_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.2	4.4e-18
>prophage 174
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2155102	2165370	3073750		Bacillus_phage(66.67%)	8	NA	NA
WP_136342224.1|2155102_2155828_+	two-component system response regulator OmpR	NA	W8CYM9	Bacillus_phage	36.9	1.4e-33
WP_001222692.1|2155896_2157213_+	two-component system sensor histidine kinase EnvZ	NA	W8CYF6	Bacillus_phage	24.8	1.0e-10
WP_080375876.1|2157237_2158674_-	uracil-xanthine permease	NA	H9YQ34	environmental_Halophage	67.4	3.6e-41
WP_032470250.1|2158982_2161061_-	ATP-dependent DNA helicase RecG	NA	A0A1B1SGQ8	Bacillus_phage	30.4	2.7e-05
WP_000280448.1|2161178_2163296_-	bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_000135052.1|2163327_2163600_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_000515793.1|2163707_2164331_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.3	9.4e-15
WP_001015358.1|2164698_2165370_+	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	NA	A0A2I7SAW6	Vibrio_phage	62.8	3.7e-65
>prophage 175
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2179577	2184486	3073750	tRNA	Bacillus_phage(66.67%)	6	NA	NA
WP_000248083.1|2179577_2180516_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	7.3e-19
WP_000483998.1|2180607_2181093_+	membrane protein FxsA	NA	NA	NA	NA	NA
WP_000459570.1|2181126_2181603_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_080004081.1|2181655_2182324_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	53.4	2.4e-56
WP_119566876.1|2182405_2183800_-	envelope stress sensor histidine kinase CpxA	NA	NA	NA	NA	NA
WP_000940145.1|2183799_2184486_-	response regulator	NA	W8CYM9	Bacillus_phage	37.3	1.2e-31
>prophage 176
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2201744	2203076	3073750		Erwinia_phage(100.0%)	1	NA	NA
WP_096070311.1|2201744_2203076_+	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	28.4	2.8e-40
>prophage 177
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2209704	2211683	3073750		uncultured_virus(50.0%)	2	NA	NA
WP_001026274.1|2209704_2209995_+	co-chaperone GroES	NA	A0A221S331	uncultured_virus	38.3	6.5e-11
WP_000729136.1|2210048_2211683_+	chaperonin GroEL	NA	A0A2I7SAK5	Vibrio_phage	68.1	2.1e-191
>prophage 178
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2217859	2218834	3073750		Catovirus(100.0%)	1	NA	NA
WP_032470267.1|2217859_2218834_+	elongation factor P--(R)-beta-lysine ligase	NA	A0A1V0SAC0	Catovirus	26.6	3.3e-22
>prophage 179
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2222262	2222802	3073750		Vibrio_phage(100.0%)	1	NA	NA
WP_000056565.1|2222262_2222802_-	PadR family transcriptional regulator	NA	A0A2I7RSZ7	Vibrio_phage	33.6	3.5e-10
>prophage 180
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2234237	2234981	3073750		Synechococcus_phage(100.0%)	1	NA	NA
WP_001898307.1|2234237_2234981_-	glutathione peroxidase	NA	A0A1D8KSL1	Synechococcus_phage	55.3	1.2e-45
>prophage 181
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2241383	2243120	3073750		Vibrio_phage(100.0%)	1	NA	NA
WP_001883980.1|2241383_2243120_+	type IV pilus secretin PilQ family protein	NA	O80264	Vibrio_phage	22.9	3.1e-15
>prophage 182
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2246543	2247377	3073750		Vibrio_phage(100.0%)	1	NA	NA
WP_000744680.1|2246543_2247377_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S6L1V5	Vibrio_phage	49.6	8.9e-69
>prophage 183
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2255770	2262722	3073750	integrase	Vibrio_phage(20.0%)	8	2251976:2251990	2266339:2266353
2251976:2251990	attL	CGAACACCTCGGAAG	NA	NA	NA	NA
WP_123161575.1|2255770_2255959_-	AlpA family transcriptional regulator	NA	A0A1V0E8E5	Vibrio_phage	44.1	1.0e-09
WP_123161576.1|2256047_2257274_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7M297	Enterobacteria_phage	40.8	3.1e-86
WP_123161577.1|2257288_2257555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000497807.1|2257557_2258532_-	ParM/StbA family protein	NA	NA	NA	NA	NA
WP_028870223.1|2258996_2259440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045613980.1|2259450_2260719_-	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	60.0	9.2e-142
WP_045613979.1|2260726_2261176_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A218MND2	uncultured_virus	57.1	3.1e-36
WP_095498764.1|2261816_2262722_+	DNA polymerase III subunit epsilon	NA	A0A2H4P6W5	Pseudomonas_phage	26.2	1.1e-06
2266339:2266353	attR	CGAACACCTCGGAAG	NA	NA	NA	NA
>prophage 184
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2279281	2281933	3073750		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_123161583.1|2279281_2281933_+	AAA family ATPase	NA	A0A1B1IUG5	uncultured_Mediterranean_phage	26.9	6.8e-46
>prophage 185
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2287324	2287923	3073750		Shigella_phage(50.0%)	2	NA	NA
WP_000058216.1|2287324_2287603_-	helix-turn-helix domain-containing protein	NA	A0A088CD40	Shigella_phage	36.3	2.2e-08
WP_054103799.1|2287599_2287923_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2I6TCA4	Escherichia_phage	44.6	7.5e-16
>prophage 186
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2313077	2328170	3073750	transposase	Rhizobium_phage(33.33%)	13	NA	NA
WP_123161596.1|2313077_2317754_+	RecQ family ATP-dependent DNA helicase	NA	K7YHB4	Megavirus	32.0	2.5e-35
WP_032469931.1|2317750_2318239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123161597.1|2318425_2318554_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_123161598.1|2319022_2319625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123161599.1|2319992_2320319_+	plasmid-related protein	NA	NA	NA	NA	NA
WP_055064031.1|2320334_2320754_+	single-stranded DNA-binding protein	NA	A0A0R6PHK0	Moraxella_phage	42.3	8.5e-20
WP_000414662.1|2320833_2321652_+	phage recombination protein Bet	NA	A0A0N7C1T0	Escherichia_phage	53.5	1.4e-53
WP_000862954.1|2321938_2322955_+	endonuclease	NA	U6C712	Ralstonia_phage	37.4	6.9e-07
WP_007104990.1|2323164_2324124_+	AAA domain-containing protein	NA	L7TKP0	Rhizobium_phage	35.0	1.4e-30
WP_123161600.1|2324123_2324891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123161601.1|2324989_2325943_+	DUF3150 domain-containing protein	NA	NA	NA	NA	NA
WP_123161602.1|2326004_2326445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123161603.1|2326514_2328170_+	VWA domain-containing protein	NA	L7TNG1	Rhizobium_phage	30.6	1.4e-09
>prophage 187
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2339668	2343035	3073750		Vibrio_phage(25.0%)	5	NA	NA
WP_123161608.1|2339668_2340331_-	hypothetical protein	NA	I3PUZ9	Vibrio_phage	39.4	1.7e-38
WP_119788445.1|2340317_2341187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000451746.1|2341242_2341494_-	helix-turn-helix domain-containing protein	NA	D0UIL8	Aggregatibacter_phage	43.9	2.2e-07
WP_000854920.1|2341611_2342259_+	LexA family transcriptional regulator	NA	K7P850	Enterobacteria_phage	46.5	5.5e-42
WP_000925692.1|2342453_2343035_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	60.7	2.6e-67
>prophage 188
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2350123	2353850	3073750		uncultured_Caudovirales_phage(50.0%)	4	NA	NA
WP_001888622.1|2350123_2350333_-	YheU family protein	NA	A0A2H4J8A7	uncultured_Caudovirales_phage	45.5	1.3e-05
WP_001965826.1|2350461_2351451_-	hydrolase	NA	NA	NA	NA	NA
WP_001278733.1|2351447_2351933_-	TIGR02444 family protein	NA	NA	NA	NA	NA
WP_001965823.1|2351933_2353850_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	33.4	1.6e-73
>prophage 189
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2358531	2366536	3073750	transposase	Brazilian_cedratvirus(33.33%)	7	NA	NA
WP_119298528.1|2358531_2359830_+	adenylosuccinate synthase	NA	A0A2R8FF47	Brazilian_cedratvirus	37.4	1.1e-70
WP_001883957.1|2360037_2360673_+	sel1 repeat family protein	NA	NA	NA	NA	NA
WP_001903924.1|2360699_2362568_-	DUF3413 domain-containing protein	NA	NA	NA	NA	NA
WP_001285864.1|2362711_2365177_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	32.2	1.0e-64
WP_000064142.1|2365184_2365928_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_123161678.1|2365941_2366055_+	rfbP protein	NA	NA	NA	NA	NA
WP_000503164.1|2366098_2366536_+|transposase	IS200/IS605-like element IS1004 family transposase	transposase	Q331U4	Clostridium_botulinum_C_phage	40.8	1.9e-22
>prophage 190
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2384384	2385767	3073750		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_000993355.1|2384384_2385767_+	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.4e-58
>prophage 191
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2390630	2392719	3073750		Hokovirus(50.0%)	2	NA	NA
WP_001057925.1|2390630_2392061_+	sulfate adenylyltransferase subunit CysN	NA	A0A1V0SGC3	Hokovirus	28.1	3.9e-32
WP_000043050.1|2392071_2392719_+	adenylyl-sulfate kinase	NA	A0A2K9L4R9	Tupanvirus	42.4	4.8e-22
>prophage 192
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2395839	2396556	3073750		Planktothrix_phage(100.0%)	1	NA	NA
WP_001110877.1|2395839_2396556_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.5	2.7e-21
>prophage 193
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2404874	2406992	3073750		Cellulophaga_phage(33.33%)	3	NA	NA
WP_001164258.1|2404874_2405222_+	gamma-glutamylcyclotransferase	NA	S0A0M5	Cellulophaga_phage	43.8	3.4e-14
WP_000056163.1|2405281_2405812_-	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	63.3	5.0e-57
WP_001171118.1|2405981_2406992_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	44.2	5.9e-75
>prophage 194
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2412162	2412879	3073750		Planktothrix_phage(100.0%)	1	NA	NA
WP_000880289.1|2412162_2412879_+	thiamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.0	3.0e-25
>prophage 195
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2416887	2425749	3073750		Thermobifida_phage(20.0%)	11	NA	NA
WP_001965750.1|2416887_2417748_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	27.6	1.3e-06
WP_001177163.1|2417760_2418207_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
WP_001166643.1|2418209_2418497_-	ribosome hibernation promoting factor	NA	NA	NA	NA	NA
WP_000804830.1|2418521_2419985_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_000996178.1|2420040_2420766_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.0	2.3e-20
WP_001887770.1|2420768_2421308_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_000059348.1|2421243_2421807_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_000099768.1|2421803_2422361_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	NA	A0A140XBD6	Dickeya_phage	59.7	9.5e-43
WP_001883892.1|2422360_2423341_-	arabinose-5-phosphate isomerase KdsD	NA	A0A2P0VNK5	Tetraselmis_virus	32.0	1.2e-37
WP_001889627.1|2423390_2424389_-	calcium/sodium antiporter	NA	NA	NA	NA	NA
WP_000083183.1|2424945_2425749_+	phospholipid ABC transporter ATP-binding protein MlaF	NA	G3M9Y6	Bacillus_virus	33.0	7.1e-23
>prophage 196
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2431366	2445336	3073750	tRNA	Paramecium_bursaria_Chlorella_virus(14.29%)	9	NA	NA
WP_000013853.1|2431366_2432296_-	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	44.6	2.7e-58
WP_000885249.1|2432545_2433550_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_000502884.1|2433700_2435077_-	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	45.1	1.3e-104
WP_000006483.1|2435498_2438408_+	RNA polymerase-associated protein RapA	NA	A0A1B1IUI1	uncultured_Mediterranean_phage	36.6	3.5e-19
WP_001251799.1|2438504_2439242_+	RNA pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	26.1	8.6e-07
WP_000056880.1|2439281_2440259_+	D-2-hydroxyacid dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	30.9	1.2e-27
WP_000416447.1|2440336_2443198_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	4.3e-147
WP_001141706.1|2443291_2443741_-	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
WP_000397172.1|2443824_2445336_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	36.5	1.3e-46
>prophage 197
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2465174	2471144	3073750		Catovirus(66.67%)	4	NA	NA
WP_000182834.1|2465174_2466980_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.5	2.3e-45
WP_123161611.1|2467465_2469187_+	acetolactate synthase 3 large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.0	1.9e-57
WP_001215918.1|2469188_2469683_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_001151637.1|2469914_2471144_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	48.6	2.8e-103
>prophage 198
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2482823	2489080	3073750		Sinorhizobium_phage(33.33%)	7	NA	NA
WP_001005346.1|2482823_2483396_+	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	31.2	1.3e-07
WP_001882141.1|2483409_2484048_+	sigma-E factor negative regulatory protein RseA	NA	NA	NA	NA	NA
WP_000734779.1|2484044_2485010_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
WP_000988005.1|2485006_2485477_+	sigma factor RpoE regulatory protein RseC	NA	NA	NA	NA	NA
WP_000680632.1|2485589_2487383_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	25.8	9.3e-23
WP_000024071.1|2487474_2488371_+	signal peptidase I	NA	NA	NA	NA	NA
WP_001885893.1|2488402_2489080_+	ribonuclease III	NA	A0A0P0YM82	Yellowstone_lake_phycodnavirus	30.7	1.1e-21
>prophage 199
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2495194	2499472	3073750		Hokovirus(50.0%)	2	NA	NA
WP_000194270.1|2495194_2497978_-	two-component sensor histidine kinase BarA	NA	A0A1V0SGX0	Hokovirus	31.0	9.0e-57
WP_000090461.1|2498149_2499472_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	28.3	1.3e-37
>prophage 200
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2502941	2507272	3073750		Only_Syngen_Nebraska_virus(33.33%)	3	NA	NA
WP_000210846.1|2502941_2504579_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	52.1	2.9e-156
WP_000036741.1|2504657_2505959_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	59.4	4.2e-134
WP_032481242.1|2506060_2507272_-	multifunctional CCA addition/repair protein	NA	A0A0F6YPT7	Sinorhizobium_phage	48.1	2.2e-84
>prophage 201
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2510590	2516140	3073750		Ostreococcus_lucimarinus_virus(50.0%)	4	NA	NA
WP_000404204.1|2510590_2511853_-	inorganic phosphate transporter	NA	M4QMY4	Ostreococcus_lucimarinus_virus	36.7	7.7e-64
WP_000178705.1|2511995_2512682_-	TIGR00153 family protein	NA	NA	NA	NA	NA
WP_000447093.1|2512881_2514399_+	inorganic triphosphatase	NA	NA	NA	NA	NA
WP_001894623.1|2514838_2516140_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.0	1.5e-25
>prophage 202
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2519172	2520603	3073750		Synechococcus_phage(100.0%)	1	NA	NA
WP_000805769.1|2519172_2520603_+	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	NA	E3SJ88	Synechococcus_phage	41.5	1.1e-18
>prophage 203
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2525102	2529272	3073750		Bacillus_virus(100.0%)	2	NA	NA
WP_000139795.1|2525102_2526983_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	35.9	5.4e-98
WP_123161615.1|2526986_2529272_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	36.4	4.0e-87
>prophage 204
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2536962	2541934	3073750		Roseobacter_phage(33.33%)	5	NA	NA
WP_123161618.1|2536962_2537508_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1B0UZW5	Roseobacter_phage	33.3	1.2e-10
WP_000690112.1|2537802_2538321_-	flavodoxin FldB	NA	NA	NA	NA	NA
WP_001287472.1|2538458_2539367_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	30.6	2.1e-31
WP_000115049.1|2539383_2540136_+	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	NA	NA	NA	NA	NA
WP_000570149.1|2540194_2541934_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.9	4.7e-64
>prophage 205
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2550011	2551439	3073750		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000031529.1|2550011_2551439_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.3	9.3e-42
>prophage 206
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2574296	2575436	3073750		Halovirus(100.0%)	1	NA	NA
WP_000045130.1|2574296_2575436_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	33.0	3.1e-48
>prophage 207
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2600318	2604522	3073750		Bacillus_phage(50.0%)	2	NA	NA
WP_001113852.1|2600318_2602058_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	32.8	2.2e-16
WP_123161626.1|2602164_2604522_+	aerobic respiration two-component sensor histidine kinase ArcB	NA	A0A1V0SGX0	Hokovirus	28.2	8.2e-35
>prophage 208
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2612329	2614962	3073750		Proteus_phage(33.33%)	3	NA	NA
WP_000614136.1|2612329_2612707_-	autonomous glycyl radical cofactor GrcA	NA	A0A249XWL7	Proteus_phage	57.9	5.7e-31
WP_000273042.1|2613052_2613913_+	deoxyribonuclease IV	NA	L7RDB2	Acanthamoeba_polyphaga_moumouvirus	34.1	4.0e-32
WP_000004493.1|2614281_2614962_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	47.0	3.4e-50
>prophage 209
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2622862	2624209	3073750		Geobacillus_virus(100.0%)	1	NA	NA
WP_000059253.1|2622862_2624209_+	thymidine phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	40.8	4.2e-76
>prophage 210
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2632240	2636133	3073750		Streptococcus_phage(50.0%)	2	NA	NA
WP_000774526.1|2632240_2634328_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	27.5	9.4e-59
WP_080007525.1|2634441_2636133_-	AMP-binding protein	NA	A0A1V0SBX8	Catovirus	29.8	1.8e-47
>prophage 211
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2639186	2642276	3073750		Herpes_simplex_virus(100.0%)	1	NA	NA
WP_123161679.1|2639186_2642276_+	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	51.8	4.9e-306
>prophage 212
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2657360	2663104	3073750		Bacillus_phage(50.0%)	2	NA	NA
WP_001271600.1|2657360_2660987_+	exodeoxyribonuclease V subunit beta	NA	A0A068EQC7	Bacillus_phage	21.7	6.7e-12
WP_123161630.1|2660983_2663104_+	exodeoxyribonuclease V subunit alpha	NA	A0A1P8DII4	Virus_Rctr197k	27.9	2.8e-26
>prophage 213
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2668154	2669366	3073750		Tupanvirus(100.0%)	1	NA	NA
WP_000933155.1|2668154_2669366_-	cysteine desulfurase CsdA	NA	A0A2K9L2Y3	Tupanvirus	33.3	4.2e-67
>prophage 214
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2693960	2694866	3073750		Cyanophage(100.0%)	1	NA	NA
WP_000689986.1|2693960_2694866_-	30S ribosomal protein S6--L-glutamate ligase	NA	A0A127KMC2	Cyanophage	34.7	2.6e-37
>prophage 215
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2697889	2708289	3073750		Staphylococcus_phage(57.14%)	11	NA	NA
WP_000890418.1|2697889_2699182_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	40.1	6.0e-72
WP_000037415.1|2699219_2699684_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_001287572.1|2699780_2701028_+	esterase FrsA	NA	NA	NA	NA	NA
WP_032478093.1|2701161_2701551_+	sigma factor-binding protein Crl	NA	NA	NA	NA	NA
WP_000210572.1|2701671_2702805_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	3.1e-64
WP_001891692.1|2702813_2704067_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000543544.1|2704167_2704617_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_001131999.1|2704642_2705746_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	32.9	7.7e-44
WP_000493874.1|2705750_2706404_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_123161633.1|2706444_2707554_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	39.6	2.6e-63
WP_000864130.1|2707818_2708289_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
>prophage 216
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2718253	2719024	3073750		Flavobacterium_phage(100.0%)	1	NA	NA
WP_001885792.1|2718253_2719024_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	39.6	2.6e-22
>prophage 217
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2729196	2733335	3073750		Cafeteria_roenbergensis_virus(50.0%)	2	NA	NA
WP_001085480.1|2729196_2729817_+	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	38.8	7.2e-23
WP_001909664.1|2729855_2733335_+	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	37.5	3.2e-205
>prophage 218
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2738499	2743044	3073750		Lactobacillus_phage(33.33%)	5	NA	NA
WP_123161637.1|2738499_2740098_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0A7NU10	Lactobacillus_phage	34.1	3.2e-14
WP_123161638.1|2740169_2740928_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000801254.1|2740965_2741703_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_123161639.1|2741773_2742244_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.4	2.6e-49
WP_123161640.1|2742300_2743044_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.2	2.3e-36
>prophage 219
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2748844	2753088	3073750		Prochlorococcus_phage(66.67%)	4	NA	NA
WP_123161641.1|2748844_2749483_-	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	41.3	3.8e-27
WP_123161642.1|2749485_2750526_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	46.8	6.1e-75
WP_001887652.1|2750692_2751319_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_080286484.1|2751600_2753088_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.5	4.1e-16
>prophage 220
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2760166	2762914	3073750		uncultured_virus(100.0%)	1	NA	NA
WP_001908661.1|2760166_2762914_-	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	38.2	6.1e-106
>prophage 221
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2770418	2777663	3073750		Tupanvirus(100.0%)	1	NA	NA
WP_123161680.1|2770418_2777663_+	amino acid adenylation domain-containing protein	NA	A0A2K9KZV5	Tupanvirus	22.6	1.1e-29
>prophage 222
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2782083	2783010	3073750		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_000145786.1|2782083_2783010_+	chemotaxis protein CheV	NA	Q56AR1	Bacillus_thuringiensis_phage	31.6	1.4e-35
>prophage 223
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2790668	2791607	3073750		Brevibacillus_phage(100.0%)	1	NA	NA
WP_123161643.1|2790668_2791607_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	S5M9Y4	Brevibacillus_phage	32.6	7.3e-11
>prophage 224
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2802300	2816955	3073750	tRNA	Tupanvirus(20.0%)	15	NA	NA
WP_001113134.1|2802300_2803245_-	ribose-phosphate pyrophosphokinase	NA	A0A2K9L2G2	Tupanvirus	38.0	1.7e-44
WP_080007516.1|2803275_2804163_-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
WP_000993149.1|2804144_2804762_-	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_000054219.1|2804920_2806180_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_000647705.1|2806209_2807298_+	peptide chain release factor 1	NA	W8EDB3	Pseudomonas_phage	46.4	2.4e-05
WP_000117266.1|2807301_2808162_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_000272895.1|2808161_2808545_+	SirB2 family protein	NA	NA	NA	NA	NA
WP_000933142.1|2808560_2809373_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_000400335.1|2809392_2810244_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	40.7	2.6e-47
WP_000809002.1|2810781_2812443_+	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000186559.1|2812575_2813058_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_000786152.1|2813128_2814382_-	uracil-xanthine permease	NA	Q9KX94	Enterobacteria_phage	36.7	2.4e-57
WP_001269699.1|2814602_2815751_+	DUF2066 domain-containing protein	NA	NA	NA	NA	NA
WP_000213731.1|2815954_2816392_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_000623701.1|2816394_2816955_-	NAD(P)H:quinone oxidoreductase	NA	M1I5B0	Acanthocystis_turfacea_Chlorella_virus	33.9	6.5e-15
>prophage 225
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2821883	2823755	3073750		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_001212595.1|2821883_2823755_+	methyl-accepting chemotaxis protein Mlp24	NA	A0A2H4J162	uncultured_Caudovirales_phage	50.3	2.8e-30
>prophage 226
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2831243	2832152	3073750		Mollivirus(100.0%)	1	NA	NA
WP_102136749.1|2831243_2832152_+	Dyp-type peroxidase	NA	A0A0M5KAH8	Mollivirus	31.3	1.6e-26
>prophage 227
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2859318	2860404	3073750		Pandoravirus(100.0%)	1	NA	NA
WP_000918434.1|2859318_2860404_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	47.4	4.8e-91
>prophage 228
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2866676	2867840	3073750		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_080388480.1|2866676_2867840_+	4-phosphoerythronate dehydrogenase	NA	A0A2R8FDS8	Brazilian_cedratvirus	29.3	6.7e-22
>prophage 229
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2873336	2874110	3073750		Mycobacterium_phage(100.0%)	1	NA	NA
WP_001275056.1|2873336_2874110_-	alpha/beta fold hydrolase	NA	A0A1D8ET90	Mycobacterium_phage	28.5	9.9e-06
>prophage 230
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2890325	2891114	3073750		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_000996146.1|2890325_2891114_-	zinc ABC transporter ATP-binding protein ZnuC	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	31.2	1.4e-15
>prophage 231
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2899927	2905273	3073750	tRNA	Tupanvirus(50.0%)	3	NA	NA
WP_001025281.1|2899927_2901661_-|tRNA	arginine--tRNA ligase	tRNA	A0A2K9L2F0	Tupanvirus	33.8	3.7e-85
WP_001187321.1|2901860_2902457_+	VOC family protein	NA	NA	NA	NA	NA
WP_001908630.1|2902453_2905273_-	insulinase family protein	NA	A0A1V0SJA4	Klosneuvirus	26.6	5.3e-97
>prophage 232
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2911511	2911880	3073750		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_000697869.1|2911511_2911880_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.1	5.6e-07
>prophage 233
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2916215	2920009	3073750		Natrialba_phage(50.0%)	5	NA	NA
WP_000637668.1|2916215_2916992_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.7	1.0e-18
WP_033928709.1|2916984_2918001_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_000075896.1|2918039_2918534_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_001881776.1|2918509_2919013_+	DUF2802 domain-containing protein	NA	NA	NA	NA	NA
WP_000895173.1|2919385_2920009_+	cytochrome c biogenesis heme-transporting ATPase CcmA	NA	A0A2H4UU96	Bodo_saltans_virus	25.6	1.4e-10
>prophage 234
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2928888	2936623	3073750		Bacillus_thuringiensis_phage(25.0%)	7	NA	NA
WP_000863548.1|2928888_2929473_-	superoxide dismutase [Fe]	NA	Q56AR7	Bacillus_thuringiensis_phage	43.4	2.7e-40
WP_000447541.1|2929724_2930057_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_123161653.1|2930141_2932085_+	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	30.6	2.1e-36
WP_054249706.1|2932105_2933026_+	histone deacetylase	NA	A0A2K9L2T7	Tupanvirus	26.6	1.8e-14
WP_000228457.1|2933484_2935287_-	DUF3413 domain-containing protein	NA	NA	NA	NA	NA
WP_001123168.1|2935321_2935537_-	YejL family protein	NA	NA	NA	NA	NA
WP_000051796.1|2935621_2936623_+	nucleoid-associated protein YejK	NA	A0A1V0E8C0	Vibrio_phage	58.3	4.2e-105
>prophage 235
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2947349	2948909	3073750		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000461422.1|2947349_2948909_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	44.2	1.3e-92
>prophage 236
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2958550	2959757	3073750		Trichoplusia_ni_ascovirus(50.0%)	2	NA	NA
WP_001918744.1|2958550_2959285_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.0	1.2e-13
WP_000065130.1|2959520_2959757_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	47.1	1.3e-09
>prophage 237
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2962980	2963619	3073750		Bacteriophage(100.0%)	1	NA	NA
WP_000991933.1|2962980_2963619_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	39.6	4.6e-25
>prophage 238
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2974641	2975586	3073750		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_123161657.1|2974641_2975586_+	chemotaxis protein CheV	NA	Q56AR1	Bacillus_thuringiensis_phage	31.2	5.8e-32
>prophage 239
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	2984943	2997383	3073750	transposase,tRNA	Xylella_phage(20.0%)	12	NA	NA
WP_032470923.1|2984943_2986794_-	signal peptide peptidase SppA	NA	V5Q7L6	Xylella_phage	27.4	1.7e-11
WP_000283417.1|2987023_2989024_+	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA	NA
WP_123161659.1|2989063_2989153_+	rfbP protein	NA	NA	NA	NA	NA
WP_000503164.1|2989196_2989634_+|transposase	IS200/IS605-like element IS1004 family transposase	transposase	Q331U4	Clostridium_botulinum_C_phage	40.8	1.9e-22
WP_071192854.1|2989719_2990553_-	formyltetrahydrofolate deformylase	NA	M4QRX9	Synechococcus_phage	31.9	1.6e-14
WP_012706022.1|2990726_2991164_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001897475.1|2991117_2993058_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	32.0	1.9e-90
WP_000111657.1|2993054_2993768_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_000253641.1|2993827_2994133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000784639.1|2994149_2994707_+	Slp family lipoprotein	NA	NA	NA	NA	NA
WP_123161660.1|2994703_2995558_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000360594.1|2995682_2997383_+	long-chain-fatty-acid--CoA ligase FadD	NA	Q75ZG1	Hepacivirus	25.5	8.8e-39
>prophage 240
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	3009177	3014546	3073750		Staphylococcus_phage(50.0%)	4	NA	NA
WP_001173528.1|3009177_3010608_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	30.1	5.9e-28
WP_001932572.1|3010639_3011803_-	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_000128673.1|3011893_3012439_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_080285266.1|3012491_3014546_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.0	2.2e-15
>prophage 241
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	3026786	3029234	3073750		Escherichia_phage(100.0%)	1	NA	NA
WP_000161721.1|3026786_3029234_+	molybdopterin guanine dinucleotide-containing S/N-oxide reductase	NA	A0A077SK27	Escherichia_phage	30.0	1.6e-81
>prophage 242
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	3035135	3036071	3073750		Enterococcus_phage(100.0%)	1	NA	NA
WP_001884974.1|3035135_3036071_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	37.1	1.8e-33
>prophage 243
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	3045748	3047275	3073750		Microcystis_phage(100.0%)	1	NA	NA
WP_080286432.1|3045748_3047275_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	35.9	5.1e-62
>prophage 244
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	3055768	3060694	3073750	protease	Agrobacterium_phage(25.0%)	4	NA	NA
WP_000121678.1|3055768_3056395_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	61.4	1.1e-63
WP_000130332.1|3056474_3057755_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	57.1	5.6e-131
WP_001047611.1|3057877_3060238_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.8	4.1e-220
WP_001044516.1|3060421_3060694_+	DNA-binding protein HU-beta	NA	A4JWM7	Burkholderia_virus	58.0	2.5e-20
>prophage 245
NZ_CP046839	Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence	3073750	3066079	3066358	3073750		Bacillus_phage(100.0%)	1	NA	NA
WP_000167341.1|3066079_3066358_+	integration host factor subunit beta	NA	A7KV42	Bacillus_phage	38.9	9.0e-10
>prophage 1
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	0	1639	1007705		Choristoneura_rosaceana_nucleopolyhedrovirus(100.0%)	1	NA	NA
WP_080285297.1|430_1639_-	Spindolin	NA	S5MR53	Choristoneura_rosaceana_nucleopolyhedrovirus	33.6	3.8e-28
>prophage 2
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	6998	18609	1007705		Pectobacterium_phage(20.0%)	11	NA	NA
WP_000365209.1|6998_7733_-	nicotinamide riboside transporter PnuC	NA	A0A1L2CV72	Pectobacterium_phage	22.1	3.8e-07
WP_000224428.1|7858_8863_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_001038373.1|8873_9794_-	ribokinase	NA	E3SL45	Synechococcus_phage	38.6	3.4e-05
WP_001908829.1|9932_10817_-	ribose ABC transporter substrate-binding protein RbsB	NA	C6ZCU4	Enterobacteria_phage	23.4	4.3e-05
WP_001887740.1|10871_11873_-	ribose ABC transporter permease	NA	NA	NA	NA	NA
WP_123161682.1|11869_13372_-	ribose ABC transporter ATP-binding protein RbsA	NA	A0A2H4PQG7	Staphylococcus_phage	26.2	4.1e-16
WP_000749918.1|13398_13818_-	D-ribose pyranase	NA	NA	NA	NA	NA
WP_000799239.1|14101_14362_+	DUF3012 domain-containing protein	NA	NA	NA	NA	NA
WP_001061216.1|14509_14878_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000786510.1|14870_15452_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000113299.1|15456_18609_-	type VI secretion system tip protein VgrG	NA	A0A0X8WP64	Ralstonia_phage	36.8	7.9e-25
>prophage 3
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	27387	102379	1007705	plate,transposase,protease	Bacillus_phage(20.0%)	61	NA	NA
WP_000619131.1|27387_29997_-	type VI secretion system ATPase TssH	NA	H6X3M6	Enterobacteria_phage	29.5	1.3e-89
WP_000083407.1|30022_30796_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_000458007.1|30798_32133_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_001045311.1|32139_32616_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_001089704.1|32618_34106_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
WP_000510180.1|34108_35125_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_000189787.1|35088_36858_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000221000.1|36863_37301_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_123161683.1|37303_38782_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_000031391.1|38822_39329_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_001908824.1|39760_40765_-	sel1 repeat family protein	NA	NA	NA	NA	NA
WP_000526406.1|40748_41033_-	type VI secretion system PAAR protein	NA	NA	NA	NA	NA
WP_001275253.1|41805_43485_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_001006512.1|43526_45305_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	26.4	1.2e-14
WP_080004126.1|45485_46145_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_001926514.1|46320_47877_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_001926512.1|47876_48260_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_033930233.1|48283_49324_-	oxidoreductase	NA	NA	NA	NA	NA
WP_123161684.1|49354_50662_-	nicotinate phosphoribosyltransferase	NA	A0A2L0UZQ6	Agrobacterium_phage	31.7	6.5e-42
WP_000637375.1|50945_51662_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000710211.1|51674_52919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001908816.1|52961_53660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000382999.1|53928_54285_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_123161685.1|54783_55413_+	triacylglycerol lipase	NA	A0A2I7SAF7	Vibrio_phage	35.1	7.0e-18
WP_001891137.1|55583_55880_-	DUF134 domain-containing protein	NA	NA	NA	NA	NA
WP_000060639.1|56109_57003_+	DMT family transporter	NA	NA	NA	NA	NA
WP_032471493.1|57267_58569_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
WP_000056157.1|58697_58862_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001882949.1|58935_59316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001964128.1|59416_60619_-	MFS transporter	NA	NA	NA	NA	NA
WP_000426189.1|60798_61245_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_123161686.1|61286_62498_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_032471494.1|62587_63475_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_032471495.1|63697_65521_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	27.5	5.0e-08
WP_001882946.1|65641_66934_-	peptidoglycan DD-metalloendopeptidase family protein	NA	Q8SBN9	Clostridium_phage	51.1	1.1e-17
WP_001885150.1|67125_67458_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
WP_032471496.1|67762_69424_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	25.4	1.2e-43
WP_029628087.1|69853_71230_+	YjiH family protein	NA	NA	NA	NA	NA
WP_123161687.1|71457_71922_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_029628089.1|71918_73019_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	29.4	1.1e-10
WP_001905839.1|73065_73845_-	phosphate ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	28.0	1.1e-12
WP_001902608.1|73849_74713_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_000150748.1|74718_75639_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_000754393.1|75716_76538_-	phosphate ABC transporter substrate-binding protein	NA	Q58MA7	Prochlorococcus_phage	27.9	1.0e-08
WP_000855108.1|76908_77472_-	DUF1566 domain-containing protein	NA	NA	NA	NA	NA
WP_123161688.1|77468_78911_-	DUF1566 domain-containing protein	NA	NA	NA	NA	NA
WP_123161689.1|78907_81214_-	proconvertase P-domain protein	NA	NA	NA	NA	NA
WP_000777822.1|81223_83365_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_032471500.1|83364_85362_-	S9 family peptidase	NA	F2Y2S4	Organic_Lake_phycodnavirus	30.1	9.4e-08
WP_032469816.1|85574_86933_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.0	3.4e-41
WP_001038491.1|87310_87559_+	membrane protein	NA	NA	NA	NA	NA
WP_000270236.1|87643_88564_-	L,D-transpeptidase family protein	NA	NA	NA	NA	NA
WP_123161690.1|88572_89982_-	deoxyribodipyrimidine photo-lyase	NA	A0A1V0SGL1	Hokovirus	32.0	3.4e-60
WP_000226964.1|89991_90789_-	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	31.2	1.5e-17
WP_001882928.1|90778_91747_-	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA	NA
WP_000224891.1|92053_92764_+	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_001132383.1|92828_94298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001890348.1|94416_95940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123161692.1|95920_97501_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	41.3	1.1e-16
WP_123161693.1|97754_99077_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_123161694.1|99124_102379_-|protease	protease	protease	NA	NA	NA	NA
>prophage 4
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	114625	120761	1007705		uncultured_Caudovirales_phage(50.0%)	4	NA	NA
WP_000777299.1|114625_116140_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	56.2	6.2e-12
WP_080285450.1|116260_117103_-	arginase	NA	NA	NA	NA	NA
WP_001006058.1|117103_117838_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001969310.1|118214_120761_-	chitinase	NA	B0FDP2	Orgyia_leucostigma_nucleopolyhedrovirus	47.0	8.9e-144
>prophage 5
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	131659	135199	1007705	transposase	Ralstonia_phage(50.0%)	3	NA	NA
WP_123161697.1|131659_133756_-	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	26.9	4.4e-32
WP_001142947.1|133883_134402_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_000503164.1|134761_135199_-|transposase	IS200/IS605-like element IS1004 family transposase	transposase	Q331U4	Clostridium_botulinum_C_phage	40.8	1.9e-22
>prophage 6
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	140079	142533	1007705		Iris_mild_mosaic_virus(100.0%)	1	NA	NA
WP_000805376.1|140079_142533_-	glycogen/starch/alpha-glucan phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	2.6e-15
>prophage 7
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	146518	149159	1007705		uncultured_Caudovirales_phage(50.0%)	2	NA	NA
WP_032471512.1|146518_148180_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	43.6	8.6e-23
WP_001266187.1|148283_149159_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	28.2	1.7e-22
>prophage 8
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	154904	160446	1007705	tRNA	Enterobacteria_phage(33.33%)	4	NA	NA
WP_000817997.1|154904_156122_+	ParA family protein	NA	Q1MVJ3	Enterobacteria_phage	28.8	5.5e-35
WP_123161700.1|156129_157101_+	ParB/RepB/Spo0J family partition protein	NA	Q7Y3Y7	Yersinia_phage	29.1	2.3e-20
WP_000846694.1|157160_158192_-	spermidine/putrescine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_123161701.1|158412_160446_+|tRNA	tRNA(Met) cytidine acetyltransferase	tRNA	Q56AQ2	Bacillus_thuringiensis_phage	32.0	9.0e-14
>prophage 9
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	169073	170534	1007705		Bacillus_virus(100.0%)	1	NA	NA
WP_001905002.1|169073_170534_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	27.6	1.3e-14
>prophage 10
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	174258	174636	1007705		Bacillus_phage(100.0%)	1	NA	NA
WP_123161703.1|174258_174636_+	response regulator	NA	W8CYM9	Bacillus_phage	36.8	3.5e-12
>prophage 11
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	183941	189813	1007705		Bacillus_phage(100.0%)	3	NA	NA
WP_001908770.1|183941_185648_+	SpoIIE family protein phosphatase	NA	W8CYM9	Bacillus_phage	33.1	8.9e-07
WP_000265356.1|185906_187577_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_001154352.1|187698_189813_-	type I secretion system permease/ATPase	NA	W8CYL7	Bacillus_phage	26.8	1.2e-32
>prophage 12
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	194693	200090	1007705		Vibrio_virus(33.33%)	4	NA	NA
WP_001132600.1|194693_195434_-	helix-turn-helix transcriptional regulator	NA	A2I306	Vibrio_virus	42.9	3.2e-38
WP_123161706.1|195751_197569_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	NA	A0A7F1	Microcystis_virus	42.1	3.1e-18
WP_001882856.1|197728_198868_-	PEGA domain-containing protein	NA	NA	NA	NA	NA
WP_000741194.1|199226_200090_+	helix-turn-helix transcriptional regulator	NA	A0A291LAM3	Bordetella_phage	37.7	8.5e-06
>prophage 13
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	206584	208504	1007705		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_001882852.1|206584_208504_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.0	3.2e-21
>prophage 14
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	215791	218997	1007705	tRNA	Orpheovirus(33.33%)	4	NA	NA
WP_123161709.1|215791_216448_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2I2L4Y7	Orpheovirus	44.3	9.9e-39
WP_001882843.1|216513_217131_-|tRNA	tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY	tRNA	NA	NA	NA	NA
WP_123161710.1|217224_218130_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	30.1	1.8e-06
WP_000839404.1|218277_218997_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	37.7	2.4e-06
>prophage 15
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	228342	229221	1007705		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_001886595.1|228342_229221_+	MBL fold metallo-hydrolase	NA	F2NZ47	Diadromus_pulchellus_ascovirus	29.4	1.7e-22
>prophage 16
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	234877	247036	1007705		uncultured_Caudovirales_phage(40.0%)	10	NA	NA
WP_123161713.1|234877_236581_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	37.1	2.2e-90
WP_123161714.1|236693_237590_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_123161715.1|237590_238427_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_123161716.1|238477_239278_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_123161717.1|239274_239994_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.3	2.3e-28
WP_000487857.1|240295_241348_+	3-deoxy-7-phosphoheptulonate synthase AroG	NA	A0A0B6VT43	Edwardsiella_phage	47.4	1.5e-81
WP_001000418.1|241452_241701_-	DUF3297 family protein	NA	NA	NA	NA	NA
WP_000524453.1|241895_243875_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.8	4.9e-25
WP_000182775.1|243883_245329_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000863741.1|245404_247036_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.4	1.4e-20
>prophage 17
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	261107	261581	1007705		Streptococcus_phage(100.0%)	1	NA	NA
WP_000017897.1|261107_261581_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	51.0	1.4e-31
>prophage 18
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	265292	265931	1007705		Pseudoalteromonas_phage(100.0%)	1	NA	NA
WP_080007814.1|265292_265931_-	glutaredoxin	NA	A0A1W5PTL2	Pseudoalteromonas_phage	42.3	6.1e-09
>prophage 19
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	275688	277548	1007705		Bacillus_phage(100.0%)	1	NA	NA
WP_032470018.1|275688_277548_-	multidrug efflux ABC transporter VcaM	NA	W8CYL7	Bacillus_phage	26.0	1.9e-31
>prophage 20
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	281095	288499	1007705		Diachasmimorpha_longicaudata_entomopoxvirus(33.33%)	4	NA	NA
WP_080285286.1|281095_282382_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.4	1.1e-46
WP_001882792.1|282460_283795_-	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_000794738.1|284153_285701_-	methyl-accepting chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	43.5	5.0e-41
WP_080007819.1|286075_288499_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	37.8	1.1e-172
>prophage 21
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	298156	301713	1007705		uncultured_Caudovirales_phage(50.0%)	2	NA	NA
WP_158142145.1|298156_299176_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	36.5	1.5e-17
WP_000074817.1|300093_301713_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	7.9e-21
>prophage 22
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	304999	306685	1007705		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_123161725.1|304999_306685_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	32.5	7.7e-27
>prophage 23
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	315781	321767	1007705		Bacillus_phage(66.67%)	5	NA	NA
WP_000976226.1|315781_316390_-	alpha-ketoglutarate-dependent dioxygenase AlkB	NA	S4W3Y0	Pandoravirus	35.7	3.5e-22
WP_032479340.1|316731_318105_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	35.3	2.2e-16
WP_001882770.1|318384_319902_-	DUF3612 domain-containing protein	NA	NA	NA	NA	NA
WP_080289554.1|320020_320629_+	malate synthase	NA	NA	NA	NA	NA
WP_001885277.1|320747_321767_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	34.1	1.8e-15
>prophage 24
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	326868	328734	1007705		Bacillus_phage(50.0%)	2	NA	NA
WP_001088091.1|326868_327390_-	spermidine N1-acetyltransferase	NA	O64026	Bacillus_phage	28.2	8.4e-09
WP_000179243.1|327612_328734_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	G3M9Y6	Bacillus_virus	32.8	4.8e-25
>prophage 25
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	340328	344612	1007705		Morganella_phage(50.0%)	4	NA	NA
WP_000105005.1|340328_340541_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	68.6	8.7e-21
WP_123161726.1|340889_342272_+	HD-GYP domain-containing protein	NA	NA	NA	NA	NA
WP_123161727.1|342384_343320_+	DUF808 domain-containing protein	NA	NA	NA	NA	NA
WP_001149824.1|343484_344612_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	NA	D0R096	Streptococcus_phage	28.2	7.1e-29
>prophage 26
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	350281	352156	1007705		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000672483.1|350281_352156_-	methyl-accepting chemotaxis protein Mlp37	NA	A0A2H4J162	uncultured_Caudovirales_phage	68.4	1.5e-18
>prophage 27
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	356477	357257	1007705		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_001193095.1|356477_357257_-	heme ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.7	5.1e-10
>prophage 28
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	363999	373870	1007705		Cyanophage(40.0%)	9	NA	NA
WP_032471065.1|363999_365736_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	35.1	3.9e-26
WP_032471066.1|365954_367088_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	39.0	3.2e-45
WP_123161732.1|367223_368060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001885299.1|368092_368722_-	DsbA family protein	NA	NA	NA	NA	NA
WP_032471067.1|368715_369579_-	MBL fold metallo-hydrolase	NA	F2NZ47	Diadromus_pulchellus_ascovirus	28.1	7.4e-18
WP_000154542.1|369896_370034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000675473.1|370189_371638_-	decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase	NA	M4SJX8	Cyanophage	33.6	3.0e-32
WP_000607058.1|371651_372368_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
WP_001891035.1|372364_373870_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.5	1.1e-85
>prophage 29
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	382100	385950	1007705		Pandoravirus(33.33%)	3	NA	NA
WP_000651100.1|382100_383369_-	aminotransferase class V-fold PLP-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	25.1	1.1e-14
WP_000092852.1|383722_384916_+	glycine C-acetyltransferase	NA	D2TEZ5	Emiliania_huxleyi_virus	29.4	2.7e-42
WP_000692622.1|384918_385950_+	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	92.3	7.7e-22
>prophage 30
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	391337	394389	1007705	transposase,integrase	Shigella_phage(33.33%)	3	387634:387649	400012:400027
387634:387649	attL	CTTGCTGGATCTGTGC	NA	NA	NA	NA
WP_086010051.1|391337_392550_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	65.5	6.8e-118
WP_000627864.1|393044_393206_-|integrase	integrase	integrase	R9TMP3	Vibrio_phage	83.0	2.3e-18
WP_000782352.1|393312_394389_-	linear amide C-N hydrolase	NA	A0A1J0F9I3	Only_Syngen_Nebraska_virus	24.3	1.1e-07
400012:400027	attR	CTTGCTGGATCTGTGC	NA	NA	NA	NA
>prophage 31
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	404357	404594	1007705		Vibrio_phage(100.0%)	1	NA	NA
WP_000380451.1|404357_404594_-	hypothetical protein	NA	U3PCF7	Vibrio_phage	58.0	6.5e-17
>prophage 32
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	435625	436111	1007705		Xanthomonas_phage(100.0%)	1	NA	NA
WP_000624159.1|435625_436111_-	cell division protein DedD	NA	A0A292GIT0	Xanthomonas_phage	41.0	3.0e-24
>prophage 33
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	449507	454877	1007705		Klosneuvirus(33.33%)	6	NA	NA
WP_033929264.1|449507_450773_+	diaminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	23.6	4.6e-16
WP_000637103.1|450808_451225_+	ectoine synthase	NA	NA	NA	NA	NA
WP_123161742.1|451221_452646_+	aspartate kinase	NA	NA	NA	NA	NA
WP_000163966.1|452726_452933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032471313.1|452965_454558_-	chaperonin GroEL	NA	A0A2I7SAK5	Vibrio_phage	63.4	5.5e-176
WP_001026270.1|454586_454877_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	39.2	2.2e-11
>prophage 34
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	459345	460275	1007705		Chrysochromulina_ericina_virus(100.0%)	1	NA	NA
WP_000998708.1|459345_460275_+	agmatinase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	25.9	1.2e-05
>prophage 35
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	469851	477470	1007705	protease	Lactococcus_phage(25.0%)	5	NA	NA
WP_032471310.1|469851_471888_-	exoribonuclease II	NA	Q0GXV6	Lactococcus_phage	25.8	2.4e-30
WP_080299370.1|472201_474193_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.5	9.9e-50
WP_033929272.1|474336_475347_+|protease	GlyGly-anchored extracellular serine protease VesA	protease	V5LQ17	Emiliania_huxleyi_virus	31.7	1.8e-10
WP_000671604.1|475565_476870_-	inosine/guanosine kinase	NA	NA	NA	NA	NA
WP_000935051.1|476987_477470_-	CreA family protein	NA	A0A2I7SAK3	Vibrio_phage	36.2	3.4e-20
>prophage 36
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	487103	491781	1007705		Planktothrix_phage(50.0%)	3	NA	NA
WP_001194969.1|487103_487781_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.2	1.5e-29
WP_032471306.1|487777_490225_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_032471305.1|490614_491781_+	nucleotide sugar dehydrogenase	NA	M1HZB2	Paramecium_bursaria_Chlorella_virus	52.4	5.5e-109
>prophage 37
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	496182	515494	1007705		Tupanvirus(12.5%)	19	NA	NA
WP_000866938.1|496182_497199_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	45.6	1.2e-80
WP_001209487.1|497289_498711_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	73.8	2.2e-06
WP_000194442.1|498939_500142_-	amino acid permease	NA	NA	NA	NA	NA
WP_001279672.1|500505_500625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071192999.1|500661_501243_+	DUF479 domain-containing protein	NA	NA	NA	NA	NA
WP_123161745.1|501279_502548_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.6	1.7e-50
WP_033929282.1|502647_503382_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001267007.1|503485_503794_-	cytochrome c	NA	NA	NA	NA	NA
WP_080004104.1|503923_504955_-	low-specificity L-threonine aldolase	NA	NA	NA	NA	NA
WP_001888048.1|504939_505497_-	NUDIX hydrolase	NA	Q5ULM8	Lactobacillus_virus	31.7	2.6e-08
WP_123161746.1|505806_507465_+	DUF3763 domain-containing protein	NA	A0A2H4PB07	Aphanizomenon_phage	27.5	8.6e-31
WP_000899945.1|507473_508919_+	ATPase RavA stimulator ViaA	NA	NA	NA	NA	NA
WP_080284583.1|509511_510240_+	arginine ABC transporter ATP-binding protein ArtP	NA	G9BWD6	Planktothrix_phage	35.3	1.2e-24
WP_000722143.1|510313_511045_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000244567.1|511046_511736_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA	NA
WP_123161747.1|511732_512401_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA	NA
WP_001882591.1|512801_513632_-	lipase	NA	Q6XLV5	Feldmannia_irregularis_virus	27.0	7.4e-07
WP_032470304.1|513716_514871_-	MFS transporter	NA	NA	NA	NA	NA
WP_123161749.1|515059_515494_-	thioredoxin TrxC	NA	A0A1J0GW78	Streptomyces_phage	41.6	1.0e-12
>prophage 38
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	521735	522590	1007705		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_001076945.1|521735_522590_+	aquaporin family protein	NA	M1HJ75	Acanthocystis_turfacea_Chlorella_virus	30.3	1.1e-13
>prophage 39
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	526377	531842	1007705		Invertebrate_iridovirus(50.0%)	4	NA	NA
WP_000448828.1|526377_526683_+	GIY-YIG nuclease family protein	NA	W8W2G4	Invertebrate_iridovirus	44.9	1.4e-11
WP_001025858.1|526784_527945_+	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_123161752.1|528156_529251_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_123161753.1|529268_531842_+	response regulator	NA	A0A1V0SGX0	Hokovirus	33.5	8.3e-49
>prophage 40
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	540297	555706	1007705		Planktothrix_phage(20.0%)	13	NA	NA
WP_033929352.1|540297_541398_+	molybdenum ABC transporter ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	33.5	8.3e-22
WP_001125126.1|541503_542757_-	hydroxymethylglutaryl-CoA reductase	NA	NA	NA	NA	NA
WP_001892545.1|542843_543134_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068418.1|543190_543352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001882560.1|543629_544205_+	guanylate cyclase	NA	NA	NA	NA	NA
WP_001012544.1|544336_545149_+	sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	26.2	1.8e-10
WP_123161755.1|545158_547324_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001917927.1|547522_549586_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	26.5	5.7e-24
WP_000682926.1|549790_550168_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_000030356.1|550472_551093_+	bifunctional nicotinamidase/pyrazinamidase	NA	A0A2K9L6K4	Tupanvirus	38.2	7.7e-25
WP_000754102.1|551161_551617_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_123161756.1|551671_552721_-	TMAO reductase system periplasmic protein TorT	NA	NA	NA	NA	NA
WP_123161757.1|552751_555706_+	TMAO reductase system sensor histidine kinase/response regulator TorS	NA	A0A1V0SGX0	Hokovirus	35.6	8.4e-53
>prophage 41
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	566531	573408	1007705		Chrysodeixis_chalcites_nucleopolyhedrovirus(33.33%)	3	NA	NA
WP_123161759.1|566531_569687_+	chitinase	NA	Q4KT15	Chrysodeixis_chalcites_nucleopolyhedrovirus	25.0	2.5e-23
WP_001154340.1|569953_571177_-	glucose-1-phosphate adenylyltransferase	NA	I7I009	Enterobacteria_phage	24.0	1.4e-09
WP_001885458.1|571479_573408_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	40.0	2.5e-21
>prophage 42
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	576882	579196	1007705		uncultured_Mediterranean_phage(50.0%)	2	NA	NA
WP_000228816.1|576882_577785_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.6	1.4e-35
WP_001225698.1|578455_579196_+	SDR family oxidoreductase	NA	A0A0K0KVL6	Prochlorococcus_phage	25.4	1.2e-08
>prophage 43
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	582709	583765	1007705		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
WP_000414889.1|582709_583765_-	ferric ABC transporter ATP-binding protein	NA	F2Y165	Organic_Lake_phycodnavirus	29.0	1.2e-09
>prophage 44
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	606725	608336	1007705		Salmonella_phage(100.0%)	1	NA	NA
WP_001908674.1|606725_608336_+	methyl-accepting chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	45.3	1.6e-29
>prophage 45
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	613137	614130	1007705		Enterobacteria_phage(100.0%)	1	NA	NA
WP_000157570.1|613137_614130_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.4	4.8e-21
>prophage 46
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	634814	638701	1007705		Acanthocystis_turfacea_Chlorella_virus(50.0%)	4	NA	NA
WP_123161774.1|634814_635786_+	D-2-hydroxyacid dehydrogenase family protein	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	25.6	5.4e-17
WP_000003787.1|635798_636839_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_123161775.1|636981_637893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123161776.1|638188_638701_-	RNA methyltransferase	NA	A0A2D1A6G0	Rhodococcus_phage	30.9	1.7e-09
>prophage 47
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	643476	651784	1007705		Cyanophage(25.0%)	9	NA	NA
WP_123161779.1|643476_644427_-	transaldolase	NA	A0A127KNC6	Cyanophage	31.1	5.7e-11
WP_123161780.1|644910_645009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000078374.1|645007_646000_+	sugar-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_123161781.1|646123_647419_+	glycoside hydrolase family 18 protein	NA	A0A1B1V5N4	Malacosoma_sp._alphabaculovirus	35.6	1.9e-65
WP_123161782.1|647572_648403_-	3-mercaptopyruvate sulfurtransferase	NA	NA	NA	NA	NA
WP_000067610.1|648424_648793_-	glyoxalase	NA	NA	NA	NA	NA
WP_080284700.1|648976_649741_-	molybdopterin-synthase adenylyltransferase MoeB	NA	S4VW33	Pandoravirus	34.9	2.7e-11
WP_032471209.1|649743_650979_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_000016194.1|651130_651784_+	GTP cyclohydrolase I FolE	NA	Q6WI31	Vibrio_phage	54.7	8.3e-54
>prophage 48
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	668619	669750	1007705		Mycoplasma_phage(100.0%)	1	NA	NA
WP_000246876.1|668619_669750_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	Q6GZ03	Mycoplasma_phage	32.5	9.4e-21
>prophage 49
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	673276	678359	1007705		Mycobacterium_phage(50.0%)	4	NA	NA
WP_000642879.1|673276_674674_-	aspartate aminotransferase family protein	NA	A0A249XSK4	Mycobacterium_phage	28.6	1.1e-10
WP_000786484.1|674691_675795_-	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA	NA
WP_000609665.1|676038_677049_+	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000177795.1|677186_678359_+	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.8	1.0e-30
>prophage 50
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	686071	686632	1007705		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_080385610.1|686071_686632_+	NUDIX domain-containing protein	NA	A0A2H4J8B3	uncultured_Caudovirales_phage	46.8	1.5e-27
>prophage 51
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	690805	692398	1007705		Planktothrix_phage(100.0%)	1	NA	NA
WP_001000858.1|690805_692398_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.9	2.9e-20
>prophage 52
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	711938	712595	1007705		Bacillus_phage(100.0%)	1	NA	NA
WP_000815041.1|711938_712595_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.2	4.2e-29
>prophage 53
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	718393	723960	1007705		Bacillus_phage(100.0%)	3	NA	NA
WP_000098956.1|718393_719632_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.7	9.3e-14
WP_123161788.1|720687_722256_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_001927187.1|722550_723960_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	30.2	1.9e-15
>prophage 54
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	732085	733042	1007705		Escherichia_phage(100.0%)	1	NA	NA
WP_123161789.1|732085_733042_-	TerC/Alx family metal homeostasis membrane protein	NA	A0A1D7XFL1	Escherichia_phage	32.5	2.1e-34
>prophage 55
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	760337	766677	1007705		Bacillus_phage(66.67%)	3	NA	NA
WP_080285403.1|760337_762398_-	response regulator	NA	W8CYM9	Bacillus_phage	33.9	1.2e-10
WP_032471594.1|762494_765536_-	SMC family ATPase	NA	G3MAB6	Bacillus_virus	24.2	2.3e-05
WP_032471593.1|765537_766677_-	exonuclease SbcCD subunit D	NA	A0A217ER54	Bacillus_phage	24.9	4.0e-11
>prophage 56
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	774239	776832	1007705		Vibrio_virus(50.0%)	2	NA	NA
WP_001106209.1|774239_774707_-	anaerobic ribonucleoside-triphosphate reductase-activating protein	NA	A0A2H5BH04	Vibrio_virus	64.3	4.1e-55
WP_123161796.1|774711_776832_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	64.7	1.6e-271
>prophage 57
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	780199	781377	1007705	transposase	Shigella_phage(100.0%)	1	NA	NA
WP_100222830.1|780199_781377_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	65.5	2.5e-117
>prophage 58
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	808933	809615	1007705		Escherichia_phage(100.0%)	2	NA	NA
WP_001232701.1|808933_809251_-	HigA family addiction module antidote protein	NA	A0A222YWD7	Escherichia_phage	46.2	5.3e-14
WP_001909000.1|809261_809615_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A222YWE2	Escherichia_phage	57.6	1.5e-25
>prophage 59
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	833626	836053	1007705		Escherichia_phage(50.0%)	5	NA	NA
WP_000351248.1|833626_834028_-	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A222YZ88	Escherichia_phage	29.8	9.4e-08
WP_001080654.1|834027_834198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032471989.1|834385_834730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032471962.1|834891_835392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057645600.1|835537_836053_-	lipocalin family protein	NA	A0A1W6JNX6	Morganella_phage	50.0	4.5e-47
>prophage 60
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	853354	874063	1007705	tRNA,transposase	Acidithiobacillus_phage(25.0%)	16	NA	NA
WP_123161430.1|853354_854887_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	42.2	7.0e-112
WP_123161431.1|854897_855638_+|transposase	transposase	transposase	K4HZD4	Acidithiobacillus_phage	42.7	1.7e-47
WP_001138366.1|856251_856605_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_001885060.1|856646_856841_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001894072.1|856944_857496_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	35.1	9.2e-14
WP_001121779.1|857499_859428_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.6	2.0e-127
WP_123161814.1|859720_860851_-	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_001287804.1|861094_861718_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_123161815.1|862105_863413_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.0	3.6e-101
WP_000361811.1|863449_863830_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_123161816.1|863973_866838_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.9	3.1e-270
WP_123161817.1|867119_867839_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_000439047.1|868055_868490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000422463.1|868584_868932_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001905773.1|869109_870279_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	45.4	1.0e-86
WP_123161818.1|872131_874063_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	49.7	4.2e-29
>prophage 61
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	884670	885342	1007705		Bacillus_phage(100.0%)	1	NA	NA
WP_080284519.1|884670_885342_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.8	5.6e-21
>prophage 62
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	898293	903728	1007705		Bacillus_phage(33.33%)	4	NA	NA
WP_080285306.1|898293_899943_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	26.5	1.8e-17
WP_001189471.1|900187_900757_+	phosphoribosyl-AMP cyclohydrolase	NA	M4QRU0	Micromonas_pusilla_virus	35.3	1.5e-19
WP_001161774.1|900874_901171_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001928884.1|902168_903728_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	36.4	5.4e-27
>prophage 63
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	909837	912483	1007705		Bacillus_virus(50.0%)	3	NA	NA
WP_000615306.1|909837_910602_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	27.8	6.8e-15
WP_001154094.1|910604_911555_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_000735136.1|911544_912483_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	43.9	1.1e-70
>prophage 64
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	920543	922190	1007705		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000586209.1|920543_922190_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	29.4	4.2e-22
>prophage 65
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	927064	928144	1007705		Bacillus_phage(100.0%)	1	NA	NA
WP_000178904.1|927064_928144_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.3	4.4e-20
>prophage 66
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	933144	954836	1007705	transposase	Escherichia_phage(20.0%)	16	NA	NA
WP_123161824.1|933144_935091_+	ATP-binding protein	NA	W8CYF6	Bacillus_phage	23.3	7.3e-05
WP_000362850.1|935148_936690_-	DUF3369 domain-containing protein	NA	NA	NA	NA	NA
WP_032471098.1|936885_937413_-	nicotinate-nicotinamide nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_032471097.1|937515_938346_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	47.1	7.0e-58
WP_123161825.1|938596_939925_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA	NA
WP_123161826.1|940114_941509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.1	8.5e-48
WP_001114686.1|941553_943458_-	hypothetical protein	NA	A0A1B5FPH1	Escherichia_phage	28.0	1.2e-60
WP_148039507.1|943458_945984_-	hypothetical protein	NA	A0A1B5FPD5	Escherichia_phage	45.7	5.5e-138
WP_123161828.1|945992_947206_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	65.5	6.8e-118
WP_123161829.1|947212_947737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000152736.1|947786_948968_-	DNA cytosine methyltransferase	NA	M1PSQ0	Streptococcus_phage	31.0	7.7e-42
WP_001217709.1|949156_950200_-	GMP reductase	NA	A0A0N9Q9A5	Chrysochromulina_ericina_virus	53.6	1.8e-98
WP_000251267.1|950856_951405_+	porin family protein	NA	NA	NA	NA	NA
WP_123161830.1|951470_952313_+	potassium channel family protein	NA	A0A1B0Y2S3	Lactobacillus_phage	38.9	3.4e-07
WP_000559519.1|952314_953658_-	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA	NA
WP_000935710.1|953840_954836_+	2-hydroxyacid dehydrogenase	NA	M1HUW8	Acanthocystis_turfacea_Chlorella_virus	42.7	9.6e-70
>prophage 67
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	959749	959959	1007705		Lactococcus_phage(100.0%)	1	NA	NA
WP_000106983.1|959749_959959_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	68.3	5.7e-17
>prophage 68
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	968639	970556	1007705		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000475387.1|968639_970556_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	34.0	4.6e-20
>prophage 69
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	978865	979078	1007705		Morganella_phage(100.0%)	1	NA	NA
WP_000078819.1|978865_979078_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	62.9	1.8e-18
>prophage 70
NZ_CP046838	Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence	1007705	994848	995355	1007705		Synechococcus_phage(100.0%)	1	NA	NA
WP_000279461.1|994848_995355_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	39.3	9.0e-16
