The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP046785	Vibrio parahaemolyticus strain 2013V-1136 chromosome 1, complete sequence	3397332	304679	311381	3397332		Staphylococcus_phage(50.0%)	7	NA	NA
WP_005440184.1|304679_305150_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	49.3	1.7e-32
WP_005496254.1|305319_306429_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.6	1.5e-63
WP_089203406.1|306598_307252_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.0	7.3e-34
WP_025625922.1|307264_308389_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	36.0	4.0e-48
WP_005482986.1|308396_308846_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_020840182.1|308973_310224_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	48.2	1.6e-98
WP_005483011.1|310241_311381_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	41.7	1.3e-62
>prophage 2
NZ_CP046785	Vibrio parahaemolyticus strain 2013V-1136 chromosome 1, complete sequence	3397332	1567798	1581878	3397332	tRNA	uncultured_Mediterranean_phage(22.22%)	12	NA	NA
WP_005455581.1|1567798_1569439_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	52.4	4.2e-155
WP_005455579.1|1569517_1570819_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	59.2	4.2e-134
WP_005455577.1|1571445_1571727_+	cell division protein FtsB	NA	NA	NA	NA	NA
WP_005478544.1|1571728_1572433_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	A0A2H4UTB4	Bodo_saltans_virus	23.6	5.9e-05
WP_005455572.1|1572450_1572927_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_089203083.1|1572973_1574017_+|tRNA	tRNA pseudouridine(13) synthase TruD	tRNA	NA	NA	NA	NA
WP_005478553.1|1574016_1574793_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.4	5.0e-66
WP_005455562.1|1574792_1575419_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	1.3e-35
WP_089203082.1|1575433_1576357_+	peptidoglycan DD-metalloendopeptidase family protein	NA	D7RWE0	Brochothrix_phage	35.2	4.1e-06
WP_089203081.1|1577505_1580067_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.7	1.3e-33
WP_021450025.1|1580151_1580634_+	nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	48.7	2.9e-27
WP_005478550.1|1580834_1581878_+	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	60.7	8.1e-112
>prophage 3
NZ_CP046785	Vibrio parahaemolyticus strain 2013V-1136 chromosome 1, complete sequence	3397332	1898469	1959740	3397332	protease,transposase,integrase	uncultured_virus(33.33%)	56	1944591:1944609	1963460:1963478
WP_031850745.1|1898469_1899678_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	48.7	7.9e-50
WP_158116408.1|1899784_1901218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031850110.1|1901428_1902145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005484531.1|1902327_1902582_+	EscI/YscI/HrpB family type III secretion system inner rod protein	NA	NA	NA	NA	NA
WP_079725507.1|1902578_1903118_+	type III secretion protein	NA	NA	NA	NA	NA
WP_083112248.1|1903119_1903578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029804027.1|1903610_1904099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046267978.1|1904120_1905239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001257892.1|1906620_1907667_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031850106.1|1907680_1908412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031850105.1|1908462_1909029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005499582.1|1908991_1909396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031850104.1|1909404_1909971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021484590.1|1909972_1910257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_079771201.1|1915121_1915622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029802733.1|1915618_1917505_+	type III secretion protein	NA	NA	NA	NA	NA
WP_031850460.1|1917516_1918557_+	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_031850459.1|1918540_1919389_+	OmpA family protein	NA	NA	NA	NA	NA
WP_031815636.1|1919378_1919771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031779624.1|1919757_1920756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031779625.1|1920768_1921419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005484480.1|1921421_1921637_+	FliM/FliN family flagellar motor switch protein	NA	NA	NA	NA	NA
WP_031815638.1|1921882_1922416_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_031850745.1|1922489_1923698_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	48.7	7.9e-50
WP_031850458.1|1924894_1925191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_083112302.1|1925253_1925940_+	EscR/YscR/HrcR family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
WP_083112300.1|1925944_1926628_+	type III secretion system apparatus protein VscT2	NA	NA	NA	NA	NA
WP_029847254.1|1926620_1926872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050550463.1|1926864_1928331_+	secretin	NA	NA	NA	NA	NA
WP_021484546.1|1929544_1929934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158116409.1|1929930_1930698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005499519.1|1930684_1930918_+	type III secretion protein	NA	NA	NA	NA	NA
WP_031850084.1|1930941_1931319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031815645.1|1931774_1932563_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_031850085.1|1933334_1934231_-	DMT family transporter	NA	NA	NA	NA	NA
WP_089203578.1|1935113_1935866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_079771262.1|1935903_1940382_+|protease	SslE/AcfD family lipoprotein zinc metalloprotease	protease	NA	NA	NA	NA
WP_005484475.1|1940492_1940897_+	H-NS histone family protein	NA	NA	NA	NA	NA
WP_031852717.1|1941151_1942021_+	hypothetical protein	NA	A0A0P0ZCT1	Stx2-converting_phage	36.1	3.1e-32
WP_158116410.1|1943258_1944545_-	hypothetical protein	NA	NA	NA	NA	NA
1944591:1944609	attL	AGGCTTTGTTGCGTAATTC	NA	NA	NA	NA
WP_089203576.1|1944664_1945537_-|transposase	IS5 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	89.8	3.1e-149
WP_029803340.1|1945872_1946442_-	TDH-related hemolysin TRH2	NA	NA	NA	NA	NA
WP_020842406.1|1946874_1947723_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_031850488.1|1948491_1949184_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_031815654.1|1949171_1949972_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_031850489.1|1949988_1950969_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_031815655.1|1950947_1952486_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_031850490.1|1952891_1953734_+	urease accessory protein ureD	NA	NA	NA	NA	NA
WP_005499469.1|1953751_1954054_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_005499468.1|1954064_1954388_+	urease subunit beta	NA	NA	NA	NA	NA
WP_083112295.1|1954384_1956088_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_020842399.1|1956142_1956622_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_020842398.1|1956649_1957315_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_020842397.1|1957323_1957962_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_079877084.1|1958210_1958498_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q716C2	Shigella_phage	29.0	1.8e-05
WP_083112293.1|1958819_1959740_-|transposase	IS5 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	90.8	1.7e-161
1963460:1963478	attR	GAATTACGCAACAAAGCCT	NA	NA	NA	NA
>prophage 4
NZ_CP046785	Vibrio parahaemolyticus strain 2013V-1136 chromosome 1, complete sequence	3397332	2723031	2732557	3397332		Vibrio_phage(100.0%)	15	NA	NA
WP_089202626.1|2723031_2724417_-	toxin	NA	Q783T9	Vibrio_phage	95.9	5.7e-262
WP_005477634.1|2724421_2724766_-	DUF2523 domain-containing protein	NA	Q783U0	Vibrio_phage	100.0	5.0e-58
WP_089202625.1|2724767_2725874_-	hypothetical protein	NA	Q783U1	Vibrio_phage	97.8	1.8e-154
WP_079400744.1|2726276_2726387_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005495000.1|2726399_2726645_-	hypothetical protein	NA	Q783U2	Vibrio_phage	97.5	3.7e-31
WP_005477619.1|2726650_2726881_-	hypothetical protein	NA	Q783U3	Vibrio_phage	100.0	1.6e-36
WP_005477647.1|2726884_2727244_-	DUF1293 domain-containing protein	NA	Q783U4	Vibrio_phage	100.0	9.1e-63
WP_015975179.1|2727247_2728456_-	DNA replication initiation protein	NA	Q7DKP2	Vibrio_phage	100.0	3.2e-245
WP_012842282.1|2728379_2728595_-	hypothetical protein	NA	A0A1W6UGD1	Vibrio_phage	98.6	2.6e-33
WP_047726187.1|2728598_2729222_-	3'-5' exonuclease	NA	W6ASW5	Vibrio_phage	50.3	1.1e-39
WP_047726170.1|2729355_2729724_+	antirepressor	NA	Q9MCC3	Vibrio_phage	60.2	7.0e-34
WP_021448543.1|2729732_2729999_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_021448542.1|2730141_2730333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031829287.1|2730329_2730704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158116419.1|2730700_2732557_+	hypothetical protein	NA	A0A2I7RNF8	Vibrio_phage	43.4	3.1e-114
>prophage 5
NZ_CP046785	Vibrio parahaemolyticus strain 2013V-1136 chromosome 1, complete sequence	3397332	2986818	3000736	3397332		Vibrio_phage(40.0%)	16	NA	NA
WP_089202549.1|2986818_2989044_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	31.9	2.2e-61
WP_005483265.1|2989338_2989551_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	61.2	2.9e-16
WP_005483162.1|2990457_2990661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005495402.1|2990883_2991291_-	APSE-2 prophage; Q protein	NA	NA	NA	NA	NA
WP_005495404.1|2991327_2991729_-	NinG recombination protein/bacteriophage lambda NinG family protein	NA	A0A2I7S3K0	Vibrio_phage	45.0	3.7e-20
WP_089202548.1|2991930_2992548_-	DUF1367 family protein	NA	K7PKS6	Enterobacteria_phage	36.1	3.1e-18
WP_089202547.1|2992540_2992894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021486513.1|2992918_2993872_-	helix-turn-helix domain-containing protein	NA	A0A1V0E831	Vibrio_phage	35.3	3.8e-39
WP_005495414.1|2993937_2994156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005495415.1|2994152_2994617_-	hypothetical protein	NA	K7PJS5	Enterobacterial_phage	48.0	3.0e-18
WP_021486590.1|2994636_2994858_-	helix-turn-helix transcriptional regulator	NA	A0A1P8DTF8	Proteus_phage	40.6	2.8e-06
WP_024702645.1|2994967_2995636_+	helix-turn-helix domain-containing protein	NA	A0A1V0E8B5	Vibrio_phage	57.1	1.1e-66
WP_127463331.1|2996346_2996526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029802384.1|2996538_2999703_+	hypothetical protein	NA	I3PUZ3	Vibrio_phage	33.6	8.7e-24
WP_021453095.1|2999695_3000223_+	siphovirus Gp157 family protein	NA	NA	NA	NA	NA
WP_021453797.1|3000547_3000736_+	hypothetical protein	NA	F6LQB8	Bdellovibrio_phage	52.8	8.8e-09
>prophage 1
NZ_CP046786	Vibrio parahaemolyticus strain 2013V-1136 chromosome 2, complete sequence	1773259	500641	508955	1773259	coat	Vibrio_phage(85.71%)	8	NA	NA
WP_089203306.1|500641_501994_-	type II secretory pathway protein	NA	R9TEZ5	Vibrio_phage	59.0	1.7e-122
WP_054574157.1|502011_503085_-	hypothetical protein	NA	O80263	Vibrio_phage	62.6	1.7e-125
WP_024701224.1|503084_503444_-|coat	minor coat protein	coat	R9TIT8	Vibrio_phage	45.6	4.6e-22
WP_021448020.1|505146_505410_-|coat	phage major coat, Gp8 family protein	coat	R9TI50	Vibrio_phage	40.3	6.3e-05
WP_005389159.1|505680_505986_-	hypothetical protein	NA	Q2PZB5	Vibrio_virus	51.0	1.1e-19
WP_089203305.1|506069_508100_-	replication endonuclease	NA	A0A0F6YPA7	Vibrio_phage	53.2	1.9e-197
WP_025518896.1|508099_508402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_089203326.1|508586_508955_+	hypothetical protein	NA	Q858Q3	Vibrio_phage	71.2	7.0e-42
