The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP046778	Vibrio parahaemolyticus strain 2014V-1125 chromosome 1, complete sequence	3323757	249088	257924	3323757		Vibrio_phage(25.0%)	13	NA	NA
WP_005495398.1|249088_251314_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	31.7	8.2e-61
WP_005483265.1|251608_251821_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	61.2	2.9e-16
WP_005495400.1|252725_252929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005495402.1|253151_253559_-	APSE-2 prophage; Q protein	NA	NA	NA	NA	NA
WP_005495404.1|253595_253997_-	NinG recombination protein/bacteriophage lambda NinG family protein	NA	A0A2I7S3K0	Vibrio_phage	45.0	3.7e-20
WP_005495406.1|253986_254169_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005495408.1|254165_254816_-	DUF1367 family protein	NA	K7PKS6	Enterobacteria_phage	36.5	7.0e-21
WP_005495410.1|254808_255189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005495412.1|255185_256139_-	helix-turn-helix domain-containing protein	NA	A0A1V0E831	Vibrio_phage	35.3	3.8e-39
WP_005495414.1|256204_256423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005495415.1|256419_256884_-	hypothetical protein	NA	K7PJS5	Enterobacterial_phage	48.0	3.0e-18
WP_005495417.1|256903_257155_-	hypothetical protein	NA	A0A1I9KFF6	Aeromonas_phage	41.9	3.8e-07
WP_079749494.1|257126_257924_+	helix-turn-helix domain-containing protein	NA	G9L676	Escherichia_phage	37.2	2.1e-22
>prophage 2
NZ_CP046778	Vibrio parahaemolyticus strain 2014V-1125 chromosome 1, complete sequence	3323757	529719	539533	3323757	tRNA	Klosneuvirus(16.67%)	7	NA	NA
WP_005495749.1|529719_531000_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.4	2.5e-22
WP_005495751.1|531069_531336_-	DksA/TraR family C4-type zinc finger protein	NA	A0A1S6UBD1	Serratia_phage	48.9	2.1e-16
WP_023650089.1|531888_532788_-	DUF3380 domain-containing protein	NA	K4RM41	Pseudomonas_phage	43.0	4.8e-36
WP_005495761.1|532990_534298_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	42.8	2.2e-90
WP_005495763.1|534389_535739_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	42.1	1.1e-84
WP_005460060.1|535745_536372_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_005495766.1|536446_539533_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	49.9	3.8e-88
>prophage 3
NZ_CP046778	Vibrio parahaemolyticus strain 2014V-1125 chromosome 1, complete sequence	3323757	963988	970690	3323757		Staphylococcus_phage(50.0%)	7	NA	NA
WP_005440184.1|963988_964459_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	49.3	1.7e-32
WP_005496254.1|964628_965738_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.6	1.5e-63
WP_005496255.1|965907_966561_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	37.0	2.1e-33
WP_005496256.1|966573_967698_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	36.0	1.8e-48
WP_005482986.1|967705_968155_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_005496257.1|968282_969533_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.9	3.6e-98
WP_005483011.1|969550_970690_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	41.7	1.3e-62
>prophage 4
NZ_CP046778	Vibrio parahaemolyticus strain 2014V-1125 chromosome 1, complete sequence	3323757	2268991	2286389	3323757	tRNA	uncultured_Mediterranean_phage(20.0%)	14	NA	NA
WP_005455581.1|2268991_2270632_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	52.4	4.2e-155
WP_005455579.1|2270710_2272012_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	59.2	4.2e-134
WP_005455577.1|2272639_2272921_+	cell division protein FtsB	NA	NA	NA	NA	NA
WP_005493934.1|2272922_2273627_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	A0A2H4UTB4	Bodo_saltans_virus	24.3	3.4e-05
WP_005493937.1|2273644_2274121_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_005493940.1|2274167_2275211_+|tRNA	tRNA pseudouridine(13) synthase TruD	tRNA	NA	NA	NA	NA
WP_005493942.1|2275210_2275987_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.4	6.6e-66
WP_005455562.1|2275986_2276613_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	1.3e-35
WP_005455560.1|2276627_2277551_+	peptidoglycan DD-metalloendopeptidase family protein	NA	D7RWE0	Brochothrix_phage	35.2	4.1e-06
WP_005493944.1|2278700_2281262_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.9	4.4e-34
WP_005493945.1|2281346_2281829_+	nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	48.7	2.9e-27
WP_005478550.1|2282029_2283073_+	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	60.7	8.1e-112
WP_005493947.1|2283196_2283664_+	recombination regulator RecX	NA	NA	NA	NA	NA
WP_005455546.1|2283806_2286389_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	37.9	1.0e-78
>prophage 1
NZ_CP046777	Vibrio parahaemolyticus strain 2014V-1125 chromosome 2, complete sequence	1834591	1475251	1526703	1834591	transposase,integrase,protease	Vibrio_phage(37.5%)	44	1481271:1481295	1496150:1496174
WP_021448338.1|1475251_1479622_+|protease	SslE/AcfD family lipoprotein zinc metalloprotease	protease	NA	NA	NA	NA
WP_005499492.1|1479732_1480137_+	H-NS histone family protein	NA	NA	NA	NA	NA
WP_100198882.1|1480352_1481255_+	OspB protein	NA	A0A0P0ZCT1	Stx2-converting_phage	35.3	1.2e-29
1481271:1481295	attL	TCTGACCGAATTACGCAACAAAGCC	NA	NA	NA	NA
WP_021448339.1|1481479_1482370_-|transposase	IS5 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	86.9	1.6e-153
WP_005499483.1|1482694_1483264_-	TDH-related hemolysin TRH1	NA	NA	NA	NA	NA
WP_005499480.1|1483700_1484549_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005499478.1|1484695_1485322_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	27.3	1.8e-05
WP_005499477.1|1485318_1486011_-	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	24.3	9.8e-05
WP_005499475.1|1485998_1486799_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023650108.1|1486815_1487784_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_005499471.1|1487774_1489313_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005499470.1|1489718_1490561_+	urease accessory protein ureD	NA	NA	NA	NA	NA
WP_005499469.1|1490578_1490881_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_005499468.1|1490891_1491215_+	urease subunit beta	NA	NA	NA	NA	NA
WP_005499467.1|1491211_1492915_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_005499466.1|1492969_1493449_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_020842398.1|1493476_1494142_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_005499462.1|1494150_1494789_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_080332365.1|1494983_1495259_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_021448344.1|1496203_1497124_-|transposase	IS5 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	91.1	1.2e-162
1496150:1496174	attR	GGCTTTGTTGCGTAATTCGGTCAGA	NA	NA	NA	NA
WP_023650135.1|1497337_1497907_+	thermostable direct hemolysin TDH	NA	NA	NA	NA	NA
WP_011106469.1|1498210_1498306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021448345.1|1498578_1500405_+	cell motility protein	NA	NA	NA	NA	NA
WP_005499452.1|1501774_1502143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005499450.1|1502359_1502884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021448349.1|1505411_1506332_+|transposase	IS5 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	88.5	2.3e-158
WP_005499427.1|1508120_1508435_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_025548618.1|1508427_1509069_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079748682.1|1510765_1511389_-	cupin	NA	NA	NA	NA	NA
WP_005499420.1|1511628_1512771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_079748673.1|1512742_1513690_+	zinc ABC transporter solute-binding protein	NA	NA	NA	NA	NA
WP_079451942.1|1513686_1514496_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_101893994.1|1514507_1514621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005499414.1|1514764_1515484_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
WP_005499413.1|1515666_1516257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005499407.1|1518264_1519104_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005499405.1|1519187_1519370_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005499403.1|1519618_1520152_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_005499401.1|1520251_1520818_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005499399.1|1521030_1521888_+	glutathione-dependent disulfide-bond oxidoreductase	NA	NA	NA	NA	NA
WP_011106462.1|1522375_1522678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005499397.1|1523314_1524484_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	45.6	3.4e-82
WP_005499396.1|1524770_1525175_+	cell division protein DamX	NA	NA	NA	NA	NA
WP_005499394.1|1525410_1526703_+|protease	serine protease	protease	V5LS29	Emiliania_huxleyi_virus	22.7	4.5e-11
