The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP046745	Vibrio cholerae strain 3566-08 chromosome 1, complete sequence	3108402	112050	119243	3108402		Anguillid_herpesvirus(16.67%)	9	NA	NA
WP_001162850.1|112050_112479_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
WP_001959105.1|112682_113972_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.0	6.5e-34
WP_000872174.1|114191_114386_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_001124187.1|114434_114773_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_019830072.1|114786_116637_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	1.5e-105
WP_001886932.1|116660_117176_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_000301571.1|117224_117548_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_000331703.1|117608_117992_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_001886931.1|118028_119243_-	IscS subfamily cysteine desulfurase	NA	A0A1X7C038	Faustovirus	41.8	5.0e-28
>prophage 2
NZ_CP046745	Vibrio cholerae strain 3566-08 chromosome 1, complete sequence	3108402	216329	271662	3108402	tRNA,integrase,transposase,protease	Bacillus_phage(20.0%)	45	216064:216080	280263:280279
216064:216080	attL	ATCGTTTTCACCAATAA	NA	NA	NA	NA
WP_158106858.1|216329_217679_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_158106859.1|217687_218263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158106860.1|218255_220382_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_158106869.1|220378_222616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001888371.1|222689_223505_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_001019422.1|223533_224328_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_000952227.1|224337_226584_-	phosphoenolpyruvate--protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	26.1	9.3e-12
WP_001883821.1|226586_227168_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_000801222.1|227735_228401_+	DNA mismatch repair endonuclease MutH	NA	NA	NA	NA	NA
WP_001892300.1|228593_229652_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_001249919.1|229689_229941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000107102.1|230518_231853_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_158106861.1|232115_233438_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_000128764.1|233564_235097_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	37.0	6.0e-87
WP_010895430.1|235127_236226_-	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	39.7	5.4e-05
WP_001888378.1|236395_237709_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_001888379.1|238017_238740_+|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_000597952.1|238827_240099_+	ATP-dependent RNA helicase SrmB	NA	A0A1V0SIR5	Klosneuvirus	34.5	1.6e-53
WP_000108381.1|240203_241793_-	peptide chain release factor 3	NA	D0R0F5	Streptococcus_phage	26.4	4.4e-32
WP_001888382.1|242001_244059_+	EAL domain-containing protein	NA	A0A127AWB9	Bacillus_phage	34.3	5.3e-14
WP_001888383.1|244047_244533_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_001888385.1|244493_244901_-	DNA polymerase III subunit psi	NA	NA	NA	NA	NA
WP_001883466.1|245011_245563_-	N-acetyltransferase	NA	A0A1P8CWJ6	Bacillus_phage	32.2	1.5e-19
WP_000932672.1|245498_246026_-	SCP2 domain-containing protein	NA	NA	NA	NA	NA
WP_001111411.1|246258_248313_+	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA	NA
WP_000421321.1|248420_249434_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_032473140.1|249445_250324_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_043881226.1|250453_251842_+|transposase	IS4 family transposase	transposase	Q9JMP3	Wolbachia_phage	27.6	2.9e-48
WP_001888387.1|251889_253227_-	sodium-coupled multidrug efflux MATE transporter VcrM	NA	NA	NA	NA	NA
WP_000950589.1|253269_253689_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001883460.1|253775_254687_-	lipoprotein NlpI	NA	NA	NA	NA	NA
WP_000462067.1|254802_256929_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_000055654.1|257291_257561_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_000124046.1|257702_258641_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_001123656.1|258640_259039_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000192209.1|259140_261837_-	translation initiation factor IF-2	NA	NA	NA	NA	NA
WP_000031601.1|261861_263349_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000147148.1|263367_263823_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_019829496.1|264253_264589_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_001281053.1|264845_266186_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_032473172.1|266211_267048_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	33.0	2.2e-19
WP_001892412.1|267114_269070_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	A0A0P0BXI2	Ostreococcus_lucimarinus_virus	44.4	2.4e-120
WP_000043220.1|269170_269800_-	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA	NA
WP_001054291.1|269919_270216_+	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA	NA
WP_001886535.1|270339_271662_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
280263:280279	attR	ATCGTTTTCACCAATAA	NA	NA	NA	NA
>prophage 3
NZ_CP046745	Vibrio cholerae strain 3566-08 chromosome 1, complete sequence	3108402	380366	387630	3108402		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_001888660.1|380366_381254_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	3.2e-56
WP_001888658.1|381521_384110_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.9e-33
WP_000116735.1|384203_385211_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_000177561.1|385284_386220_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000002982.1|386219_386846_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_001888657.1|386838_387630_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.0	5.0e-69
>prophage 4
NZ_CP046745	Vibrio cholerae strain 3566-08 chromosome 1, complete sequence	3108402	681367	689563	3108402		Micromonas_sp._RCC1109_virus(16.67%)	7	NA	NA
WP_001887557.1|681367_682987_-	aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	27.5	1.1e-11
WP_001887558.1|682979_684800_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.5	3.1e-26
WP_001887559.1|684808_685951_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	E5ES42	Bathycoccus_sp._RCC1105_virus	29.2	8.5e-38
WP_050501597.1|685947_687135_-	formyl transferase	NA	A0A220T679	Eptesipox_virus	41.9	2.0e-05
WP_032472847.1|687106_687529_-	WxcM-like domain-containing protein	NA	NA	NA	NA	NA
WP_019827646.1|687525_688407_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	68.1	4.0e-112
WP_000699461.1|688489_689563_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	51.2	7.6e-97
>prophage 5
NZ_CP046745	Vibrio cholerae strain 3566-08 chromosome 1, complete sequence	3108402	1518117	1524729	3108402		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000210573.1|1518117_1519251_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
WP_001888606.1|1519259_1520513_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000543544.1|1520612_1521062_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_001888607.1|1521087_1522191_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.5e-44
WP_000493874.1|1522195_1522849_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001122865.1|1522889_1523999_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000864130.1|1524258_1524729_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
>prophage 6
NZ_CP046745	Vibrio cholerae strain 3566-08 chromosome 1, complete sequence	3108402	2018631	2101099	3108402	tail,head,terminase,portal,protease,lysis,integrase,capsid	Vibrio_phage(93.18%)	94	2012413:2012429	2078096:2078112
2012413:2012429	attL	TCAGCAAAAAAGCTTAC	NA	NA	NA	NA
WP_001886870.1|2018631_2023155_+|protease	SslE/AcfD family lipoprotein zinc metalloprotease	protease	NA	NA	NA	NA
WP_001886869.1|2024032_2025307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001013534.1|2025410_2026223_-	solute-binding protein	NA	NA	NA	NA	NA
WP_001886868.1|2026462_2027296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019830198.1|2027282_2027486_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001886867.1|2027651_2029244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032472471.1|2029542_2030184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032472472.1|2030325_2030580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000734971.1|2030581_2031115_+	type III secretion protein	NA	NA	NA	NA	NA
WP_000830400.1|2031116_2031575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001001657.1|2031604_2032093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001886865.1|2032105_2033473_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001886864.1|2033473_2034619_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000858304.1|2034975_2036025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000026208.1|2036035_2036761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001246761.1|2036805_2037408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032467989.1|2037334_2037742_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032472473.1|2037752_2038328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050926665.1|2041397_2042180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088131832.1|2042292_2042904_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001886859.1|2044803_2045856_+	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_001886858.1|2045830_2046637_+	OmpA family protein	NA	NA	NA	NA	NA
WP_000842251.1|2046626_2047019_+	VPA1352 family putative T3SS effector	NA	NA	NA	NA	NA
WP_095461408.1|2048014_2048668_+	VPA1350 family putative T3SS effector	NA	NA	NA	NA	NA
WP_000861356.1|2048682_2048898_+	FliM/FliN family flagellar motor switch protein	NA	NA	NA	NA	NA
WP_032472475.1|2049110_2049662_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_139284602.1|2050514_2050814_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001910588.1|2050862_2051549_+	EscR/YscR/HrcR family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
WP_001186128.1|2051551_2052235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000181845.1|2052227_2052476_+	VPA1340 family putative T3SS effector	NA	NA	NA	NA	NA
WP_002052990.1|2052465_2053923_+	vcsC2	NA	G4WZN6	Enterobacteria_phage	23.3	1.3e-06
WP_000922351.1|2053922_2055185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088136745.1|2055264_2055534_+	VPA1337 family putative T3SS effector	NA	NA	NA	NA	NA
WP_001886853.1|2055526_2056267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000217070.1|2056253_2056487_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
WP_000854879.1|2056501_2056876_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000836879.1|2056876_2057362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001886852.1|2057345_2058113_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_019829802.1|2058351_2059110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000472892.1|2059150_2059432_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001886849.1|2059664_2060279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001886848.1|2062027_2063263_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	61.4	1.0e-145
WP_001886847.1|2063864_2065271_-|tail	tail fiber domain-containing protein	tail	A0A1E1GDN9	Vibrio_phage	35.2	2.4e-13
WP_158129018.1|2065270_2066788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158129019.1|2066733_2066979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032472478.1|2066978_2067260_-	hypothetical protein	NA	A0A1V0E868	Vibrio_phage	60.4	1.3e-24
WP_154388724.1|2067324_2067486_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001886844.1|2067496_2068897_-	hypothetical protein	NA	A0A2I7R7L5	Vibrio_phage	35.9	5.0e-40
WP_154388725.1|2068889_2069054_-	hypothetical protein	NA	A0A1V0E896	Vibrio_phage	50.9	1.9e-07
WP_158129020.1|2069062_2072950_-	DUF1983 domain-containing protein	NA	A0A1V0E886	Vibrio_phage	79.8	0.0e+00
WP_139284599.1|2072960_2073563_-|tail	tail assembly protein	tail	A0A1V0E8A0	Vibrio_phage	70.0	6.4e-69
WP_071181058.1|2073632_2073962_-	DUF2116 family Zn-ribbon domain-containing protein	NA	A0A1V0E899	Vibrio_phage	56.5	9.3e-30
WP_071181057.1|2074299_2075127_+	KilA-N domain-containing protein	NA	I6R977	Salmonella_phage	41.1	9.2e-34
WP_071181056.1|2075156_2075939_-	C40 family peptidase	NA	A0A1V0E882	Vibrio_phage	53.5	2.9e-77
WP_139284598.1|2075940_2076693_-|tail	phage minor tail protein L	tail	A0A1V0E876	Vibrio_phage	77.8	7.4e-115
WP_071181054.1|2076696_2077035_-|tail	phage tail protein	tail	A0A1V0E890	Vibrio_phage	75.9	1.3e-47
WP_071181053.1|2077037_2079854_-|tail	phage tail tape measure protein	tail	A0A1V0E821	Vibrio_phage	58.9	7.7e-290
2078096:2078112	attR	GTAAGCTTTTTTGCTGA	NA	NA	NA	NA
WP_071181052.1|2080038_2080554_-	hypothetical protein	NA	A0A1V0E823	Vibrio_phage	69.2	6.8e-43
WP_032472483.1|2080565_2081045_-|tail	tail protein	tail	A0A1V0E8B3	Vibrio_phage	89.2	1.3e-75
WP_158129021.1|2081125_2081494_-	DUF3168 domain-containing protein	NA	A0A1V0E8A7	Vibrio_phage	74.6	9.7e-52
WP_044126710.1|2081490_2081958_-	HK97 gp10 family phage protein	NA	A0A1V0E895	Vibrio_phage	84.3	3.7e-56
WP_032472486.1|2081960_2082323_-|head,tail	head-tail adaptor protein	head,tail	A0A1V0E8B6	Vibrio_phage	66.4	4.3e-44
WP_032472487.1|2082322_2082616_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A1V0E887	Vibrio_phage	69.6	6.1e-33
WP_032472488.1|2082630_2082900_-	hypothetical protein	NA	A0A1V0E889	Vibrio_phage	58.0	6.3e-08
WP_001886837.1|2082972_2084160_-|capsid	phage major capsid protein	capsid	A0A1V0E898	Vibrio_phage	78.7	2.0e-167
WP_001886836.1|2084164_2085043_-|protease	Clp protease ClpP	protease	A0A1V0E8B8	Vibrio_phage	82.2	8.3e-134
WP_001886835.1|2085045_2086353_-|portal	phage portal protein	portal	A0A1V0E8B9	Vibrio_phage	83.0	5.4e-214
WP_032472489.1|2086352_2086553_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001886832.1|2086552_2088268_-|terminase	terminase large subunit	terminase	A0A1V0E8C2	Vibrio_phage	91.8	0.0e+00
WP_032472490.1|2088264_2088738_-|terminase	phage terminase small subunit P27 family	terminase	A0A1V0E8B7	Vibrio_phage	73.9	4.9e-64
WP_032472491.1|2088743_2089103_-	HNH endonuclease	NA	A0A1V0E8A5	Vibrio_phage	79.8	1.2e-51
WP_139284597.1|2089106_2089427_-	hypothetical protein	NA	A0A1V0E8K3	Vibrio_phage	55.7	1.8e-22
WP_032472493.1|2089490_2089697_-	hypothetical protein	NA	A0A1V0E8A3	Vibrio_phage	69.7	2.4e-20
WP_158106439.1|2090544_2090985_-|lysis	lysis protein	lysis	A0A1V1FDS3	Vibrio_phage	47.7	3.1e-20
WP_080285581.1|2090956_2091568_-	lysozyme	NA	A0A1V0E844	Vibrio_phage	79.5	1.3e-85
WP_044126697.1|2091554_2091740_-	hypothetical protein	NA	A0A1V0E826	Vibrio_phage	55.7	2.4e-11
WP_044126696.1|2091871_2092540_-	hypothetical protein	NA	A0A1V0E841	Vibrio_phage	60.3	4.0e-72
WP_158106440.1|2092602_2092749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148529107.1|2092768_2093152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158129022.1|2093162_2094176_-	DUF968 domain-containing protein	NA	A0A1U9GXE8	Vibrio_phage	67.8	5.6e-134
WP_044126693.1|2094169_2094454_-	DUF4406 domain-containing protein	NA	A0A1U9GY09	Vibrio_phage	79.6	2.9e-40
WP_158129023.1|2094450_2094681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044126691.1|2094709_2095216_-	hypothetical protein	NA	A0A1V1FCN0	Vibrio_phage	71.4	1.7e-62
WP_044126690.1|2095212_2095545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044126689.1|2095537_2095987_-	HNH endonuclease	NA	A0A2I7RBN4	Vibrio_phage	75.8	5.9e-59
WP_148529108.1|2095986_2096193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071181037.1|2096365_2097064_-	DNA-binding protein	NA	A0A1V0E838	Vibrio_phage	61.0	8.8e-70
WP_044126685.1|2097064_2097256_-	hypothetical protein	NA	A0A1V0E856	Vibrio_phage	40.0	4.2e-06
WP_158106447.1|2097258_2098248_-	ATPase	NA	R9TPU9	Vibrio_phage	57.4	1.0e-42
WP_032472503.1|2098240_2098513_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071181035.1|2098517_2099171_-	phage N-6-adenine-methyltransferase	NA	Q8HA94	Salmonella_phage	47.6	6.8e-48
WP_071181034.1|2099354_2099561_-	hypothetical protein	NA	A0A1V0E8D3	Vibrio_phage	66.2	2.0e-14
WP_032472504.1|2099557_2100010_-	hypothetical protein	NA	R9TRN6	Vibrio_phage	63.0	2.9e-42
WP_001886826.1|2100304_2101099_+	helix-turn-helix transcriptional regulator	NA	R9TNM0	Vibrio_phage	64.5	1.1e-76
>prophage 7
NZ_CP046745	Vibrio cholerae strain 3566-08 chromosome 1, complete sequence	3108402	2104161	2115609	3108402	integrase	Vibrio_phage(93.75%)	22	2102109:2102124	2124277:2124292
2102109:2102124	attL	CAAAATTTGATGAGGT	NA	NA	NA	NA
WP_050501589.1|2104161_2104692_+	hypothetical protein	NA	A0A2I7R165	Vibrio_phage	35.0	6.5e-25
WP_001886824.1|2104697_2105807_+	recombination-associated protein RdgC	NA	A0A2I7RNT5	Vibrio_phage	55.3	1.9e-87
WP_001886822.1|2105855_2107373_+	DNA cytosine methyltransferase	NA	A0A1L5C2B8	Pseudoalteromonas_phage	52.6	3.3e-154
WP_032472510.1|2107383_2107878_+	hypothetical protein	NA	A0A1V0E8E0	Vibrio_phage	54.4	1.7e-43
WP_032472511.1|2107907_2108117_+	hypothetical protein	NA	A0A1V0E8D5	Vibrio_phage	65.2	1.1e-20
WP_050501592.1|2108129_2108966_+	hypothetical protein	NA	A0A1V0E8C5	Vibrio_phage	72.3	1.2e-113
WP_032472512.1|2108979_2109240_+	hypothetical protein	NA	A0A1V0E8E7	Vibrio_phage	53.8	1.1e-12
WP_152554673.1|2109266_2109764_+	hypothetical protein	NA	A0A1V0E8C4	Vibrio_phage	77.4	8.2e-70
WP_032472514.1|2109756_2110008_+	hypothetical protein	NA	A0A1V0E8C3	Vibrio_phage	61.0	1.6e-18
WP_158129024.1|2110028_2110664_+	hypothetical protein	NA	A0A1V0E8E6	Vibrio_phage	63.6	6.1e-78
WP_032472516.1|2110676_2111018_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032472517.1|2111020_2111452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032472518.1|2111448_2111676_+	hypothetical protein	NA	A0A1V0E8F5	Vibrio_phage	67.6	2.9e-22
WP_152554674.1|2111779_2112022_+	hypothetical protein	NA	A0A067ZIB4	Vibrio_phage	82.2	3.6e-31
WP_032472520.1|2112027_2112297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032472521.1|2112296_2112731_+	hypothetical protein	NA	A0A2I7RS33	Vibrio_phage	36.2	6.1e-13
WP_043881223.1|2113126_2113459_+	hypothetical protein	NA	A0A1V0E8F8	Vibrio_phage	66.7	8.2e-26
WP_032472523.1|2113470_2113689_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032472524.1|2113693_2113933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158129025.1|2113959_2114163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032472526.1|2114164_2114362_+	AlpA family transcriptional regulator	NA	A0A1V0E8E5	Vibrio_phage	70.8	2.9e-18
WP_001886817.1|2114358_2115609_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	82.9	8.3e-204
2124277:2124292	attR	CAAAATTTGATGAGGT	NA	NA	NA	NA
>prophage 8
NZ_CP046745	Vibrio cholerae strain 3566-08 chromosome 1, complete sequence	3108402	2355638	2369717	3108402		Vibrio_phage(68.75%)	16	NA	NA
WP_000593519.1|2355638_2356013_-	cholera enterotoxin binding subunit CtxB	NA	A0A142I6Y1	Vibrio_phage	100.0	5.9e-65
WP_001888508.1|2356009_2356786_-	cholera enterotoxin catalytic subunit CtxA	NA	A0A023W6A1	Vibrio_virus	100.0	7.8e-152
WP_050926705.1|2356885_2358085_-	zonula occludens toxin ZOT	NA	A0A023W604	Vibrio_virus	100.0	5.3e-240
WP_000979342.1|2358081_2358375_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_001888513.1|2360047_2360428_-	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	4.0e-69
WP_001888498.1|2360405_2361485_-	hypothetical protein	NA	A0A023W5Z8	Vibrio_virus	99.7	8.5e-213
WP_000492997.1|2361616_2361952_+	helix-turn-helix transcriptional regulator	NA	A0A0N9HJE7	Vibrio_phage	100.0	4.7e-53
WP_000593519.1|2362559_2362934_-	cholera enterotoxin binding subunit CtxB	NA	A0A142I6Y1	Vibrio_phage	100.0	5.9e-65
WP_001888508.1|2362930_2363707_-	cholera enterotoxin catalytic subunit CtxA	NA	A0A023W6A1	Vibrio_virus	100.0	7.8e-152
WP_050926705.1|2363806_2365006_-	zonula occludens toxin ZOT	NA	A0A023W604	Vibrio_virus	100.0	5.3e-240
WP_000979342.1|2365002_2365296_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_080112449.1|2365292_2366576_-	hypothetical protein	NA	A0A142I701	Vibrio_phage	98.6	1.2e-218
WP_000493022.1|2366586_2366835_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001888513.1|2366970_2367351_-	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	4.0e-69
WP_000492997.1|2368538_2368874_+	helix-turn-helix transcriptional regulator	NA	A0A0N9HJE7	Vibrio_phage	100.0	4.7e-53
WP_000948761.1|2369405_2369717_-	hypothetical protein	NA	E3U9J1	Vibrio_phage	100.0	6.6e-09
>prophage 1
NZ_CP046746	Vibrio cholerae strain 3566-08 chromosome 2, complete sequence	1015844	615284	633052	1015844		Vibrio_phage(47.62%)	30	NA	NA
WP_000402089.1|615284_615815_-	helix-turn-helix domain-containing protein	NA	Q2PZB7	Vibrio_virus	46.7	3.6e-07
WP_158129037.1|615924_617067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158129038.1|617078_617360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019829436.1|617356_617710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001888123.1|617778_618003_+	RstC protein	NA	U5TMI6	Satellite_phage	94.6	3.6e-33
WP_005521559.1|618021_618174_-	hypothetical protein	NA	B1B6U1	Vibrio_virus	96.0	7.6e-19
WP_005521560.1|618300_618492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000402089.1|618797_619328_-	helix-turn-helix domain-containing protein	NA	Q2PZB7	Vibrio_virus	46.7	3.6e-07
WP_158129037.1|619437_620580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158129038.1|620591_620873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019829436.1|620869_621223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001888123.1|621291_621516_+	RstC protein	NA	U5TMI6	Satellite_phage	94.6	3.6e-33
WP_005521559.1|621534_621687_-	hypothetical protein	NA	B1B6U1	Vibrio_virus	96.0	7.6e-19
WP_005521560.1|621813_622005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000201563.1|622376_622556_-	hypothetical protein	NA	Q9MBU8	Vibrio_virus	100.0	6.4e-25
WP_019830347.1|622687_623767_+	hypothetical protein	NA	A0A023W5Z8	Vibrio_virus	100.0	2.2e-213
WP_001888513.1|623744_624125_+	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	4.0e-69
WP_000493022.1|624260_624509_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_158106819.1|624519_625800_+	hypothetical protein	NA	A0A142I701	Vibrio_phage	94.1	3.6e-218
WP_080112448.1|625796_626090_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	99.0	4.1e-45
WP_134983484.1|626086_627286_+	zonula occludens toxin ZOT	NA	A0A0N9HE81	Vibrio_phage	99.7	6.5e-238
WP_005521559.1|627300_627453_-	hypothetical protein	NA	B1B6U1	Vibrio_virus	96.0	7.6e-19
WP_005521560.1|627579_627771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000201563.1|628142_628322_-	hypothetical protein	NA	Q9MBU8	Vibrio_virus	100.0	6.4e-25
WP_019830347.1|628453_629533_+	hypothetical protein	NA	A0A023W5Z8	Vibrio_virus	100.0	2.2e-213
WP_001888513.1|629510_629891_+	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	4.0e-69
WP_000493022.1|630026_630275_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_158106819.1|630285_631566_+	hypothetical protein	NA	A0A142I701	Vibrio_phage	94.1	3.6e-218
WP_080112448.1|631562_631856_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	99.0	4.1e-45
WP_134983484.1|631852_633052_+	zonula occludens toxin ZOT	NA	A0A0N9HE81	Vibrio_phage	99.7	6.5e-238
>prophage 2
NZ_CP046746	Vibrio cholerae strain 3566-08 chromosome 2, complete sequence	1015844	818279	827627	1015844	transposase	Escherichia_phage(33.33%)	6	NA	NA
WP_001887128.1|818279_819674_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.4	1.7e-48
WP_001887130.1|819839_820277_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	34.1	3.2e-17
WP_001887131.1|820337_822134_-	hypothetical protein	NA	A0A1B5FPH1	Escherichia_phage	22.1	8.2e-27
WP_001887132.1|822133_825130_-	sensor histidine kinase	NA	A0A1B5FPD5	Escherichia_phage	32.3	6.0e-75
WP_001915158.1|825214_826396_-	DNA cytosine methyltransferase	NA	M1PSQ0	Streptococcus_phage	31.8	1.2e-42
WP_001217709.1|826583_827627_-	GMP reductase	NA	A0A0N9Q9A5	Chrysochromulina_ericina_virus	53.6	1.8e-98
