The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP046749	Vibrio cholerae strain 2015V-1118 chromosome 1, complete sequence	2927934	381664	388930	2927934		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_123162379.1|381664_382456_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.6	8.4e-69
WP_000002982.1|382448_383075_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_118089416.1|383074_384010_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000116735.1|384083_385091_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_001893275.1|385186_387775_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.2	5.8e-34
WP_001279365.1|388042_388930_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
>prophage 2
NZ_CP046749	Vibrio cholerae strain 2015V-1118 chromosome 1, complete sequence	2927934	620363	627556	2927934		Faustovirus(16.67%)	9	NA	NA
WP_000775249.1|620363_621578_+	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.8	8.8e-33
WP_000331703.1|621614_621998_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000301571.1|622058_622382_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_001105750.1|622430_622946_+	co-chaperone HscB	NA	NA	NA	NA	NA
WP_123162432.1|622969_624820_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	7.0e-106
WP_001124187.1|624833_625172_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_000872174.1|625220_625415_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_000107237.1|625634_626924_+	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_001162850.1|627127_627556_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
>prophage 3
NZ_CP046749	Vibrio cholerae strain 2015V-1118 chromosome 1, complete sequence	2927934	2226399	2233015	2927934		Staphylococcus_phage(66.67%)	7	NA	NA
WP_123162906.1|2226399_2226870_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	1.2e-33
WP_123162907.1|2227133_2228243_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	1.1e-63
WP_000493874.1|2228283_2228937_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_123162908.1|2228941_2230045_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	2.6e-44
WP_000543544.1|2230070_2230520_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_080299252.1|2230619_2231873_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.7	1.7e-100
WP_000210573.1|2231881_2233015_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
>prophage 1
NZ_CP046750	Vibrio cholerae strain 2015V-1118 chromosome 2, complete sequence	1102732	143429	201882	1102732	portal,terminase,tail,head,protease,capsid	Vibrio_phage(84.62%)	53	NA	NA
WP_123161927.1|143429_146186_+|protease	M6 family metalloprotease PrtV	protease	NA	NA	NA	NA
WP_000717581.1|146261_147116_-	lipase secretion chaperone	NA	NA	NA	NA	NA
WP_001033424.1|147125_148064_-	triacylglycerol lipase	NA	NA	NA	NA	NA
WP_000586208.1|148411_150058_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	31.1	1.5e-22
WP_001125272.1|150358_152584_-	cytolysin VCC	NA	NA	NA	NA	NA
WP_000746874.1|153556_154813_+	thermolabile hemolysin	NA	NA	NA	NA	NA
WP_000178904.1|154933_156013_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.3	4.4e-20
WP_000949610.1|156003_156270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001893346.1|156483_157728_+	multidrug efflux MFS transporter EmrD	NA	NA	NA	NA	NA
WP_123161928.1|158122_159712_+	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA	NA
WP_001905795.1|159789_160839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123161929.1|161013_162960_+	ATP-binding protein	NA	W8CYF6	Bacillus_phage	23.3	7.3e-05
WP_000362852.1|163017_164559_-	DUF3369 domain-containing protein	NA	NA	NA	NA	NA
WP_000717534.1|164754_165282_-	nicotinate-nicotinamide nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_123161930.1|165384_166215_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	47.8	8.3e-59
WP_123161931.1|166465_167794_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA	NA
WP_123161932.1|167983_169378_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.6	4.5e-49
WP_123161934.1|170926_172258_+	RNA-dependent DNA polymerase	NA	NA	NA	NA	NA
WP_123161935.1|173584_175216_-	hypothetical protein	NA	A0A160DHT6	Vibrio_phage	97.8	2.5e-309
WP_000457681.1|175212_175686_-	hypothetical protein	NA	U3PDI0	Vibrio_phage	100.0	6.6e-77
WP_123161936.1|175673_176567_-	hypothetical protein	NA	U3PIM3	Vibrio_phage	97.6	3.2e-157
WP_123161937.1|176569_177100_-	hypothetical protein	NA	A9ZT45	Vibrio_virus	76.8	6.5e-41
WP_000005871.1|178672_179332_-	hypothetical protein	NA	U3PB79	Vibrio_phage	99.1	1.2e-124
WP_123161938.1|179328_180528_-	hypothetical protein	NA	U3PDH5	Vibrio_phage	99.2	1.9e-221
WP_123161939.1|180524_180857_-	DUF2590 family protein	NA	U3PIM1	Vibrio_phage	99.1	3.8e-55
WP_123161940.1|180846_182664_-|tail	phage tail tape measure protein	tail	U3PFL8	Vibrio_phage	81.0	2.5e-265
WP_000165783.1|182860_183142_-	hypothetical protein	NA	A0A160DHS7	Vibrio_phage	76.3	5.3e-34
WP_114813176.1|183349_183691_-	hypothetical protein	NA	U3PB75	Vibrio_phage	96.5	6.4e-50
WP_123161942.1|183665_184253_-	lysozyme	NA	U3PDH1	Vibrio_phage	99.5	5.6e-110
WP_001899725.1|184239_184452_-	hypothetical protein	NA	U3PIL8	Vibrio_phage	85.5	5.6e-28
WP_114742987.1|184448_184658_-	TraR/DksA family transcriptional regulator	NA	U3PFL5	Vibrio_phage	89.6	1.5e-28
WP_123161943.1|184672_185131_-	DUF2597 family protein	NA	U3PCG7	Vibrio_phage	97.4	3.3e-81
WP_123161944.1|185130_186240_-	DUF2586 family protein	NA	U3PB71	Vibrio_phage	98.1	2.3e-205
WP_123161945.1|186241_186901_-	phage virion morphogenesis protein	NA	U3PDG7	Vibrio_phage	98.2	5.0e-115
WP_114813168.1|186887_187376_-	hypothetical protein	NA	U3PIL4	Vibrio_phage	99.4	2.7e-89
WP_061051036.1|187372_187834_-|head	head completion/stabilization protein	head	U3PFL1	Vibrio_phage	99.3	5.8e-78
WP_123161946.1|187940_188663_-|terminase	terminase endonuclease subunit	terminase	U3PCG2	Vibrio_phage	93.0	3.3e-120
WP_000930691.1|188673_189675_-|capsid	phage major capsid protein, P2 family	capsid	R9TPZ5	Vibrio_phage	61.9	1.5e-107
WP_123161947.1|189674_190562_-|capsid	capsid protein	capsid	R9TRS3	Vibrio_phage	63.5	1.2e-95
WP_123161948.1|190735_192556_+|terminase	terminase ATPase subunit family protein	terminase	U3PIL1	Vibrio_phage	94.4	0.0e+00
WP_123162261.1|192552_193575_+|portal	phage portal protein	portal	U3PFK6	Vibrio_phage	92.9	6.8e-188
WP_123161949.1|193838_194408_+	DUF4760 domain-containing protein	NA	Q8HA56	Vibrio_phage	38.1	1.8e-25
WP_123161950.1|194497_194749_+	ogr/Delta-like zinc finger family protein	NA	Q8HA63	Vibrio_phage	97.6	2.1e-42
WP_123161951.1|194743_194962_-	hypothetical protein	NA	Q8HA64	Vibrio_phage	100.0	5.6e-31
WP_123161952.1|195161_197747_-	replication endonuclease	NA	A0A166YHE2	Vibrio_phage	98.1	0.0e+00
WP_123161953.1|197785_198073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001198812.1|198271_198499_-	hypothetical protein	NA	U3PIK2	Vibrio_phage	61.3	2.6e-23
WP_123161955.1|198748_199159_-	hypothetical protein	NA	U3PCE8	Vibrio_phage	97.8	1.3e-73
WP_123161956.1|199155_199671_-	hypothetical protein	NA	U3PB56	Vibrio_phage	51.4	7.3e-29
WP_123161957.1|199751_200186_-	hypothetical protein	NA	U3PDF0	Vibrio_phage	99.3	1.4e-73
WP_000253094.1|200198_200738_-	hypothetical protein	NA	U3PIJ8	Vibrio_phage	98.9	1.0e-94
WP_000959091.1|200848_201061_-	hypothetical protein	NA	U3PFJ1	Vibrio_phage	78.6	3.2e-23
WP_123161958.1|201228_201882_+	phage repressor protein CI	NA	A0A166YHA0	Vibrio_phage	71.9	1.0e-80
>prophage 2
NZ_CP046750	Vibrio cholerae strain 2015V-1118 chromosome 2, complete sequence	1102732	784053	816897	1102732	integrase,transposase	Vibrio_phage(36.0%)	39	786029:786044	816323:816338
WP_148039557.1|784053_785466_-	hypothetical protein	NA	H9EB45	Vibrio_phage	23.5	4.2e-26
WP_123162136.1|785696_786575_-	hypothetical protein	NA	NA	NA	NA	NA
786029:786044	attL	TAGGTGTTGGAGAAAA	NA	NA	NA	NA
WP_123162137.1|786577_787438_-	hypothetical protein	NA	A0A1B0Z0D6	Vibrio_phage	37.4	5.6e-42
WP_123162138.1|787438_790396_-	tape measure protein	NA	A0A2I2L6P9	Escherichia_phage	22.8	1.3e-16
WP_001200696.1|790392_790722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123162139.1|790727_791060_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123162140.1|791098_792016_-	hypothetical protein	NA	G8EY04	Synechococcus_phage	34.1	1.0e-33
WP_001050344.1|792025_792463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123162141.1|792474_792879_-	DUF1320 domain-containing protein	NA	A0A2I7S9E9	Vibrio_phage	33.1	1.8e-06
WP_148039558.1|792881_793313_-	hypothetical protein	NA	A0A0C4UQZ0	Shigella_phage	31.0	2.5e-06
WP_123162143.1|793369_794269_-	hypothetical protein	NA	J9SVY7	Pseudomonas_phage	46.6	6.6e-78
WP_123162144.1|794271_794658_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123162145.1|794659_795769_-	hypothetical protein	NA	A0A0C4UQU6	Shigella_phage	42.3	1.1e-63
WP_123162146.1|795841_797143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000929398.1|797374_797833_-	phage virion morphogenesis protein	NA	J9SNH3	Pseudomonas_phage	36.4	1.4e-20
WP_000039943.1|797832_798024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123162147.1|798036_799452_-	F protein	NA	A0A2H4IYU7	uncultured_Caudovirales_phage	48.8	5.9e-65
WP_123162148.1|799451_800999_-	DUF935 domain-containing protein	NA	J9SVY0	Pseudomonas_phage	49.7	1.1e-128
WP_123162149.1|801007_802561_-	hypothetical protein	NA	A0A2I7S9C5	Vibrio_phage	62.3	5.0e-166
WP_123162150.1|802560_803139_-	DUF3486 family protein	NA	NA	NA	NA	NA
WP_001162663.1|803147_803438_-	hypothetical protein	NA	A0A2I7S9D8	Vibrio_phage	65.3	5.0e-27
WP_000801962.1|803437_803773_-	DUF2730 family protein	NA	NA	NA	NA	NA
WP_123162151.1|803781_803985_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA	NA
WP_123162152.1|803981_804581_-	hypothetical protein	NA	M4MB79	Vibrio_phage	59.4	1.3e-42
WP_001259553.1|804829_805267_-	hypothetical protein	NA	M4M9N1	Vibrio_phage	60.7	3.5e-48
WP_123162153.1|805475_805886_-	transcriptional regulator	NA	A0A0C4UQZ9	Shigella_phage	38.0	9.2e-19
WP_123162154.1|806092_807142_-	AAA family ATPase	NA	Q7M293	Enterobacteria_phage	29.4	2.0e-25
WP_123162155.1|807366_807942_-	regulatory protein GemA	NA	A0A0C4UQU3	Shigella_phage	37.8	5.1e-31
WP_123162156.1|808106_808328_-	hypothetical protein	NA	A0A2I7S9C8	Vibrio_phage	68.9	1.1e-07
WP_000749526.1|808413_808623_-	ANR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000172412.1|808648_809275_-	DUF3164 family protein	NA	M4MHH7	Vibrio_phage	64.0	1.3e-64
WP_123162157.1|809271_809460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000368744.1|809444_809696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_119773028.1|809756_810302_-	helix-turn-helix transcriptional regulator	NA	A0A1B0T6G8	Thiobacimonas_phage	32.3	3.7e-07
WP_123162158.1|810285_810879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000791090.1|810890_811622_-	ATP-binding protein	NA	A0A1B0T6H3	Thiobacimonas_phage	30.2	8.7e-20
WP_123162159.1|811755_814002_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	M4T586	Rhodobacter_phage	24.2	2.4e-44
WP_123162161.1|814476_815154_+	XRE family transcriptional regulator	NA	A0A1C6ZDG7	Pseudomonas_phage	30.9	2.1e-23
WP_000684072.1|815730_816897_+	nucleotide sugar dehydrogenase	NA	M1HZB2	Paramecium_bursaria_Chlorella_virus	52.4	5.5e-109
816323:816338	attR	TTTTCTCCAACACCTA	NA	NA	NA	NA
