The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP046747	Vibrio cholerae strain 3541-04 chromosome 1, complete sequence	3065919	590685	597877	3065919		Anguillid_herpesvirus(16.67%)	9	NA	NA
WP_001162850.1|590685_591114_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
WP_001959105.1|591317_592607_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.0	6.5e-34
WP_000872174.1|592826_593021_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_001124187.1|593068_593407_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_044127538.1|593420_595271_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	40.9	1.5e-105
WP_001105750.1|595294_595810_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_000301571.1|595858_596182_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_000331703.1|596242_596626_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000775249.1|596662_597877_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.8	8.8e-33
>prophage 2
NZ_CP046747	Vibrio cholerae strain 3541-04 chromosome 1, complete sequence	3065919	835040	842304	3065919		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_044126959.1|835040_835928_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	7.0e-56
WP_044126974.1|836195_838784_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
WP_000116735.1|838877_839885_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_000177559.1|839958_840894_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_044126958.1|840893_841520_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.7	5.2e-37
WP_076007802.1|841512_842304_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.0	2.9e-69
>prophage 3
NZ_CP046747	Vibrio cholerae strain 3541-04 chromosome 1, complete sequence	3065919	2022793	2029287	3065919		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000210573.1|2022793_2023927_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
WP_158128573.1|2023935_2025189_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.7	2.3e-100
WP_000543544.1|2025288_2025738_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_076008077.1|2025763_2026867_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.7e-43
WP_000493874.1|2026871_2027525_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001122865.1|2027565_2028675_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_001959298.1|2028816_2029287_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	8.9e-34
>prophage 4
NZ_CP046747	Vibrio cholerae strain 3541-04 chromosome 1, complete sequence	3065919	2885857	2893229	3065919		Vibrio_phage(55.56%)	9	NA	NA
WP_131065134.1|2885857_2886202_-	helix-turn-helix domain-containing protein	NA	Q2PZB7	Vibrio_virus	100.0	3.9e-55
WP_158128670.1|2886709_2888455_+	replication endonuclease	NA	A0A0F6YPA7	Vibrio_phage	98.3	0.0e+00
WP_032473196.1|2888504_2888825_+	hypothetical protein	NA	Q2PZB5	Vibrio_virus	92.5	1.0e-49
WP_158128671.1|2888960_2889209_+	Colonization factor	NA	A0A0N7F140	Vibrio_phage	98.8	4.4e-32
WP_158128672.1|2889219_2890503_+	hypothetical protein	NA	A0A142I701	Vibrio_phage	98.1	6.7e-217
WP_000979342.1|2890499_2890793_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_158128673.1|2890789_2891989_+	zonula occludens toxin ZOT	NA	A0A023W604	Vibrio_virus	99.2	2.9e-238
WP_001888508.1|2892081_2892858_+	cholera enterotoxin catalytic subunit CtxA	NA	A0A023W6A1	Vibrio_virus	100.0	7.8e-152
WP_000593519.1|2892854_2893229_+	cholera enterotoxin binding subunit CtxB	NA	A0A142I6Y1	Vibrio_phage	100.0	5.9e-65
>prophage 1
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	0	2642	1063121		Bordetella_phage(100.0%)	2	NA	NA
WP_001882856.1|280_1420_-	PEGA domain-containing protein	NA	NA	NA	NA	NA
WP_000741187.1|1778_2642_+	helix-turn-helix transcriptional regulator	NA	A0A291LAM3	Bordetella_phage	37.7	8.5e-06
>prophage 2
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	9129	11049	1063121		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_001882852.1|9129_11049_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.0	3.2e-21
>prophage 3
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	25487	28693	1063121	tRNA	Staphylococcus_phage(33.33%)	4	NA	NA
WP_044125489.1|25487_26144_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	42.3	2.0e-39
WP_001882843.1|26210_26828_-|tRNA	tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY	tRNA	NA	NA	NA	NA
WP_044125493.1|26921_27827_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	30.1	1.8e-06
WP_158128697.1|27973_28693_+	SDR family NAD(P)-dependent oxidoreductase	NA	W8CYX9	Bacillus_phage	39.0	1.1e-06
>prophage 4
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	41165	54814	1063121		uncultured_Caudovirales_phage(33.33%)	12	NA	NA
WP_001886600.1|41165_42107_+	peptidoglycan DD-metalloendopeptidase family protein	NA	E5G070	Clostridium_phage	46.0	5.4e-14
WP_001882826.1|42016_42418_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA	NA
WP_044125523.1|42476_44180_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	36.6	4.2e-89
WP_044125526.1|44488_45385_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_044125527.1|45385_46222_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_158128700.1|46257_47058_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_044125529.1|47054_47774_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.0	3.5e-29
WP_044125587.1|48075_49128_+	3-deoxy-7-phosphoheptulonate synthase AroG	NA	A0A0B6VT43	Edwardsiella_phage	47.4	1.2e-81
WP_001000416.1|49221_49470_-	DUF3297 family protein	NA	NA	NA	NA	NA
WP_044125531.1|49673_51653_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	32.7	1.9e-24
WP_044125533.1|51661_53107_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000863748.1|53182_54814_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.4	1.0e-20
>prophage 5
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	68903	69377	1063121		Streptococcus_phage(100.0%)	1	NA	NA
WP_000017897.1|68903_69377_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	51.0	1.4e-31
>prophage 6
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	73090	73729	1063121		Pseudoalteromonas_phage(100.0%)	1	NA	NA
WP_080285497.1|73090_73729_-	glutaredoxin	NA	A0A1W5PTL2	Pseudoalteromonas_phage	42.3	7.9e-09
>prophage 7
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	88885	96091	1063121		Diachasmimorpha_longicaudata_entomopoxvirus(33.33%)	4	NA	NA
WP_158128702.1|88885_90172_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.7	2.0e-43
WP_001886640.1|90250_91585_-	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_001886642.1|91940_93497_-	methyl-accepting chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	56.9	7.0e-43
WP_001886648.1|93679_96091_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	37.6	1.9e-172
>prophage 8
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	105205	109290	1063121		uncultured_Caudovirales_phage(50.0%)	3	NA	NA
WP_000490053.1|105205_106753_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	36.5	2.3e-17
WP_000978028.1|106772_107504_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000074820.1|107670_109290_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	7.9e-21
>prophage 9
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	112591	114277	1063121		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_080285500.1|112591_114277_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	32.7	7.7e-27
>prophage 10
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	123371	129357	1063121		Bacillus_phage(66.67%)	5	NA	NA
WP_044125559.1|123371_123980_-	alpha-ketoglutarate-dependent dioxygenase AlkB	NA	S4W3Y0	Pandoravirus	35.7	2.7e-22
WP_044125561.1|124321_125695_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	35.3	2.2e-16
WP_001882770.1|125974_127492_-	DUF3612 domain-containing protein	NA	NA	NA	NA	NA
WP_080285502.1|127610_128219_+	malate synthase	NA	NA	NA	NA	NA
WP_080112288.1|128337_129357_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	34.1	1.8e-15
>prophage 11
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	134518	136384	1063121		Bacillus_phage(50.0%)	2	NA	NA
WP_158128705.1|134518_135040_-	spermidine N1-acetyltransferase	NA	O64026	Bacillus_phage	28.2	3.2e-08
WP_000179243.1|135262_136384_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	G3M9Y6	Bacillus_virus	32.8	4.8e-25
>prophage 12
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	143037	144003	1063121		Bacillus_phage(100.0%)	1	NA	NA
WP_080285503.1|143037_144003_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.3	9.2e-17
>prophage 13
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	147975	152214	1063121		Morganella_phage(50.0%)	4	NA	NA
WP_000105005.1|147975_148188_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	68.6	8.7e-21
WP_001886683.1|148536_149919_+	HD-GYP domain-containing protein	NA	NA	NA	NA	NA
WP_032472572.1|150031_150967_+	DUF808 domain-containing protein	NA	NA	NA	NA	NA
WP_001886688.1|151080_152214_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	NA	D0R096	Streptococcus_phage	29.0	3.8e-30
>prophage 14
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	155734	157609	1063121		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000672482.1|155734_157609_-	methyl-accepting chemotaxis protein Mlp37	NA	A0A2H4J162	uncultured_Caudovirales_phage	62.0	2.4e-21
>prophage 15
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	162056	162836	1063121		Pithovirus(100.0%)	1	NA	NA
WP_032474018.1|162056_162836_-	heme ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	24.5	2.3e-10
>prophage 16
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	169581	182045	1063121		Cyanophage(40.0%)	11	NA	NA
WP_044125571.1|169581_171318_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	34.8	1.9e-25
WP_158128709.1|171459_172599_+	CdaR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000052698.1|172757_174110_+	GntP family permease	NA	NA	NA	NA	NA
WP_000869524.1|174128_175262_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	39.2	4.2e-45
WP_158128710.1|175397_176234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001889314.1|176266_176896_-	DsbA family protein	NA	NA	NA	NA	NA
WP_001094875.1|176889_177753_-	MBL fold metallo-hydrolase	NA	F2NZ47	Diadromus_pulchellus_ascovirus	28.1	9.7e-18
WP_000154542.1|178071_178209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000675469.1|178364_179813_-	decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase	NA	M4SJX8	Cyanophage	33.6	3.0e-32
WP_000607056.1|179826_180543_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
WP_001891035.1|180539_182045_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.5	1.1e-85
>prophage 17
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	190273	196605	1063121		Vibrio_phage(50.0%)	6	NA	NA
WP_032474352.1|190273_191542_-	aminotransferase class V-fold PLP-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	25.1	1.5e-14
WP_033930361.1|191852_193046_+	glycine C-acetyltransferase	NA	D2TEZ5	Emiliania_huxleyi_virus	29.6	1.2e-42
WP_002045365.1|193048_194080_+	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	92.3	7.7e-22
WP_158128711.1|194553_195732_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_080286669.1|195721_196285_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_032472582.1|196488_196605_-	hypothetical protein	NA	R9TMP3	Vibrio_phage	73.7	4.9e-10
>prophage 18
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	200413	204914	1063121		Morganella_phage(33.33%)	4	NA	NA
WP_000066811.1|200413_200626_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	58.6	4.2e-15
WP_158128712.1|200937_203154_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	33.3	2.8e-61
WP_000689270.1|203250_204201_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_000380451.1|204677_204914_-	hypothetical protein	NA	U3PCF7	Vibrio_phage	58.0	6.5e-17
>prophage 19
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	208138	209419	1063121		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000478324.1|208138_209419_-	PAS domain S-box protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	54.5	2.7e-16
>prophage 20
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	229440	230421	1063121		Bacillus_phage(100.0%)	1	NA	NA
WP_000998608.1|229440_230421_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	30.2	2.9e-10
>prophage 21
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	237216	237702	1063121		Xanthomonas_phage(100.0%)	1	NA	NA
WP_002045324.1|237216_237702_-	deoxycytidylate deaminase	NA	A0A292GIT0	Xanthomonas_phage	41.0	3.0e-24
>prophage 22
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	251169	256539	1063121		Klosneuvirus(33.33%)	6	NA	NA
WP_019829558.1|251169_252435_+	diaminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	23.6	7.8e-16
WP_000637105.1|252470_252887_+	ectoine synthase	NA	NA	NA	NA	NA
WP_080112204.1|252883_254308_+	aspartate kinase	NA	NA	NA	NA	NA
WP_000163962.1|254388_254595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044127395.1|254627_256220_-	chaperonin GroEL	NA	A0A2I7SAK5	Vibrio_phage	63.2	9.4e-176
WP_001026270.1|256248_256539_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	39.2	2.2e-11
>prophage 23
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	261007	261937	1063121		Chrysochromulina_ericina_virus(100.0%)	1	NA	NA
WP_000998707.1|261007_261937_+	agmatinase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	25.9	1.6e-05
>prophage 24
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	265362	276945	1063121	protease	Apis_mellifera_filamentous_virus(20.0%)	8	NA	NA
WP_158128714.1|265362_266820_-	N-acetylglucosamine-binding protein GbpA	NA	A0A0K1Y848	Apis_mellifera_filamentous_virus	32.1	6.4e-14
WP_158128715.1|267313_268864_+	cryptochrome/photolyase family protein	NA	A0A1V0SE91	Indivirus	28.2	3.5e-50
WP_001882629.1|269137_269830_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_158128716.1|269975_270812_-	phosphate ABC transporter substrate-binding protein PstS family protein	NA	NA	NA	NA	NA
WP_000418967.1|270959_271373_+	DUF3024 domain-containing protein	NA	NA	NA	NA	NA
WP_158128717.1|271467_273504_-	exoribonuclease II	NA	Q0GXV6	Lactococcus_phage	26.1	6.2e-31
WP_001885391.1|273817_275809_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.5	1.3e-49
WP_148519993.1|275952_276945_+|protease	GlyGly-anchored extracellular serine protease VesA	protease	V5LQ17	Emiliania_huxleyi_virus	30.7	2.2e-10
>prophage 25
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	280516	280999	1063121		Vibrio_phage(100.0%)	1	NA	NA
WP_000935051.1|280516_280999_-	CreA family protein	NA	A0A2I7SAK3	Vibrio_phage	36.2	3.4e-20
>prophage 26
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	290644	295334	1063121		Planktothrix_phage(50.0%)	3	NA	NA
WP_001194969.1|290644_291322_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.2	1.5e-29
WP_158128720.1|291318_293778_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_044127412.1|294167_295334_+	nucleotide sugar dehydrogenase	NA	M1HZB2	Paramecium_bursaria_Chlorella_virus	52.4	4.2e-109
>prophage 27
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	299728	320710	1063121		uncultured_Caudovirales_phage(22.22%)	21	NA	NA
WP_000866938.1|299728_300745_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	45.6	1.2e-80
WP_032476549.1|300840_302262_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	49.3	2.8e-06
WP_044127415.1|302489_303692_-	amino acid permease	NA	NA	NA	NA	NA
WP_044127416.1|304055_304175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001009839.1|304211_304793_+	DUF479 domain-containing protein	NA	NA	NA	NA	NA
WP_044127417.1|304829_306098_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.3	2.8e-58
WP_044127418.1|306197_306932_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001266838.1|307035_307344_-	cytochrome c	NA	NA	NA	NA	NA
WP_080285686.1|307471_308503_-	low-specificity L-threonine aldolase	NA	NA	NA	NA	NA
WP_113602906.1|308487_309045_-	NUDIX hydrolase	NA	Q5ULM8	Lactobacillus_virus	31.7	2.6e-08
WP_000941295.1|309354_311013_+	DUF3763 domain-containing protein	NA	A0A2H4PB07	Aphanizomenon_phage	27.5	6.6e-31
WP_000899954.1|311021_312467_+	ATPase RavA stimulator ViaA	NA	NA	NA	NA	NA
WP_080285690.1|313059_313788_+	arginine ABC transporter ATP-binding protein ArtP	NA	G9BWD6	Planktothrix_phage	35.3	9.0e-25
WP_000722141.1|313861_314593_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_044127423.1|314594_315284_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA	NA
WP_000662924.1|315280_315949_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA	NA
WP_044127425.1|316001_316907_-	LysR family transcriptional regulator	NA	A0A2H4J8I9	uncultured_Caudovirales_phage	36.0	2.8e-07
WP_000109225.1|317081_317582_+	lactoylglutathione lyase family protein	NA	NA	NA	NA	NA
WP_158128722.1|318016_318847_-	lipase	NA	Q6XLV5	Feldmannia_irregularis_virus	26.3	3.7e-06
WP_114741297.1|318932_320087_-	MFS transporter	NA	NA	NA	NA	NA
WP_000102967.1|320275_320710_-	thioredoxin TrxC	NA	A0A1J0GW78	Streptomyces_phage	41.6	8.0e-13
>prophage 28
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	326951	327806	1063121		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_001076945.1|326951_327806_+	aquaporin family protein	NA	M1HJ75	Acanthocystis_turfacea_Chlorella_virus	30.3	1.1e-13
>prophage 29
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	331576	337041	1063121		Invertebrate_iridovirus(50.0%)	4	NA	NA
WP_000448828.1|331576_331882_+	GIY-YIG nuclease family protein	NA	W8W2G4	Invertebrate_iridovirus	44.9	1.4e-11
WP_033928042.1|331983_333144_+	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_158128727.1|333355_334450_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_114728679.1|334467_337041_+	response regulator	NA	A0A1V0SGX0	Hokovirus	33.5	6.4e-49
>prophage 30
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	340679	342968	1063121		Chrysochromulina_ericina_virus(100.0%)	1	NA	NA
WP_148527891.1|340679_342968_+	DEAD/DEAH box helicase	NA	A0A0N9R1K5	Chrysochromulina_ericina_virus	25.4	2.2e-08
>prophage 31
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	346917	356215	1063121		Planktothrix_phage(33.33%)	8	NA	NA
WP_158128732.1|346917_348018_+	molybdenum ABC transporter ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.3	6.3e-22
WP_001125116.1|348132_349386_-	hydroxymethylglutaryl-CoA reductase	NA	NA	NA	NA	NA
WP_158128733.1|349472_349763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068418.1|349819_349981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001889095.1|350258_350834_+	guanylate cyclase	NA	NA	NA	NA	NA
WP_032474427.1|350830_351778_+	two-component sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	26.2	2.1e-10
WP_001913462.1|351787_353953_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001917927.1|354151_356215_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	26.5	5.7e-24
>prophage 32
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	359355	364589	1063121		Tupanvirus(50.0%)	4	NA	NA
WP_000030357.1|359355_359976_+	bifunctional nicotinamidase/pyrazinamidase	NA	A0A2K9L6K4	Tupanvirus	38.2	5.9e-25
WP_000754102.1|360044_360500_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_158128735.1|360554_361604_-	TMAO reductase system periplasmic protein TorT	NA	NA	NA	NA	NA
WP_158128736.1|361634_364589_+	TMAO reductase system sensor histidine kinase/response regulator TorS	NA	A0A1V0SGX0	Hokovirus	35.9	1.1e-52
>prophage 33
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	375415	382247	1063121		Chrysodeixis_chalcites_nucleopolyhedrovirus(33.33%)	3	NA	NA
WP_158128740.1|375415_378571_+	chitinase	NA	Q4KT15	Chrysodeixis_chalcites_nucleopolyhedrovirus	24.8	1.1e-23
WP_001154339.1|378837_380061_-	glucose-1-phosphate adenylyltransferase	NA	I7I009	Enterobacteria_phage	24.0	1.4e-09
WP_044126448.1|380363_382247_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	40.0	2.4e-21
>prophage 34
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	385767	388081	1063121		uncultured_Mediterranean_phage(50.0%)	2	NA	NA
WP_158128741.1|385767_386670_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.2	1.6e-34
WP_044126456.1|387340_388081_+	SDR family oxidoreductase	NA	A0A0K0KVL6	Prochlorococcus_phage	25.0	6.0e-08
>prophage 35
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	391594	392650	1063121		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
WP_000414889.1|391594_392650_-	ferric ABC transporter ATP-binding protein	NA	F2Y165	Organic_Lake_phycodnavirus	29.0	1.2e-09
>prophage 36
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	408270	409302	1063121		Enterobacteria_phage(100.0%)	1	NA	NA
WP_000130347.1|408270_409302_-	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.5	4.7e-19
>prophage 37
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	417066	422809	1063121		uncultured_Caudovirales_phage(50.0%)	5	NA	NA
WP_044126477.1|417066_418830_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.9	8.8e-34
WP_158128745.1|418976_419621_+	beta-phosphoglucomutase family hydrolase	NA	NA	NA	NA	NA
WP_044126478.1|419703_420177_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_001882512.1|420389_421013_+	OmpA family protein	NA	NA	NA	NA	NA
WP_080285540.1|421198_422809_+	methyl-accepting chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	45.3	1.2e-29
>prophage 38
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	427608	428601	1063121		Enterobacteria_phage(100.0%)	1	NA	NA
WP_044126483.1|427608_428601_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.7	1.3e-21
>prophage 39
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	449175	450147	1063121		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_044126495.1|449175_450147_+	D-2-hydroxyacid dehydrogenase family protein	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	25.3	4.6e-16
>prophage 40
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	454595	455108	1063121		Rhodococcus_phage(100.0%)	1	NA	NA
WP_044126500.1|454595_455108_-	RNA methyltransferase	NA	A0A2D1A6G0	Rhodococcus_phage	31.2	1.3e-09
>prophage 41
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	459869	468271	1063121		Cyanophage(25.0%)	9	NA	NA
WP_000066349.1|459869_460820_-	transaldolase	NA	A0A127KNC6	Cyanophage	31.1	3.3e-11
WP_044126503.1|461303_461414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000078376.1|461412_462405_+	sugar-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_000754379.1|462528_463824_+	glycoside hydrolase family 18 protein	NA	A0A1B1V5N4	Malacosoma_sp._alphabaculovirus	35.6	5.4e-65
WP_044126504.1|464089_464920_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_005525904.1|464941_465310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080285547.1|465454_466228_-	molybdopterin-synthase adenylyltransferase MoeB	NA	S4VW33	Pandoravirus	35.7	7.1e-12
WP_044126505.1|466230_467466_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_000016195.1|467617_468271_+	GTP cyclohydrolase I FolE	NA	Q6WI31	Vibrio_phage	54.7	1.1e-53
>prophage 42
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	475474	479982	1063121		Mycobacterium_phage(50.0%)	3	NA	NA
WP_158128755.1|475474_476872_-	aspartate aminotransferase family protein	NA	A0A249XSK4	Mycobacterium_phage	28.1	3.2e-10
WP_158128756.1|477834_478803_+	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_158128757.1|478941_479982_+	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.8	4.1e-31
>prophage 43
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	487659	488220	1063121		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_001896581.1|487659_488220_+	NUDIX domain-containing protein	NA	A0A2H4J8B3	uncultured_Caudovirales_phage	48.4	2.3e-28
>prophage 44
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	492407	494000	1063121		Planktothrix_phage(100.0%)	1	NA	NA
WP_158128758.1|492407_494000_+	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.9	1.0e-20
>prophage 45
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	510944	522800	1063121		Vibrio_phage(62.5%)	16	NA	NA
WP_134983484.1|510944_512144_-	zonula occludens toxin ZOT	NA	A0A0N9HE81	Vibrio_phage	99.7	6.5e-238
WP_080112448.1|512140_512434_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	99.0	4.1e-45
WP_080480141.1|512430_513714_-	hypothetical protein	NA	A0A142I701	Vibrio_phage	98.4	2.7e-218
WP_000493022.1|513724_513973_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001888513.1|514108_514489_-	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	4.0e-69
WP_019830347.1|514466_515546_-	hypothetical protein	NA	A0A023W5Z8	Vibrio_virus	100.0	2.2e-213
WP_000201563.1|515677_515857_+	hypothetical protein	NA	Q9MBU8	Vibrio_virus	100.0	6.4e-25
WP_000593519.1|516647_517022_-	cholera enterotoxin binding subunit CtxB	NA	A0A142I6Y1	Vibrio_phage	100.0	5.9e-65
WP_001888508.1|517018_517795_-	cholera enterotoxin catalytic subunit CtxA	NA	A0A023W6A1	Vibrio_virus	100.0	7.8e-152
WP_050926705.1|517887_519087_-	zonula occludens toxin ZOT	NA	A0A023W604	Vibrio_virus	100.0	5.3e-240
WP_080112448.1|519083_519377_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	99.0	4.1e-45
WP_080480141.1|519373_520657_-	hypothetical protein	NA	A0A142I701	Vibrio_phage	98.4	2.7e-218
WP_000493022.1|520667_520916_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001888513.1|521051_521432_-	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	4.0e-69
WP_019830347.1|521409_522489_-	hypothetical protein	NA	A0A023W5Z8	Vibrio_virus	100.0	2.2e-213
WP_000201563.1|522620_522800_+	hypothetical protein	NA	Q9MBU8	Vibrio_virus	100.0	6.4e-25
>prophage 46
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	526238	526895	1063121		Bacillus_phage(100.0%)	1	NA	NA
WP_000815043.1|526238_526895_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.2	4.2e-29
>prophage 47
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	532693	538262	1063121		Bacillus_phage(100.0%)	4	NA	NA
WP_000098947.1|532693_533935_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.7	5.5e-14
WP_080285556.1|533931_534915_-	Solitary outer membrane autotransporter beta-barrel domain	NA	NA	NA	NA	NA
WP_044126531.1|534989_536558_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_158128762.1|536852_538262_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	30.2	3.3e-15
>prophage 48
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	546375	547332	1063121		Escherichia_phage(100.0%)	1	NA	NA
WP_032472971.1|546375_547332_-	TerC/Alx family metal homeostasis membrane protein	NA	A0A1D7XFL1	Escherichia_phage	32.5	2.8e-34
>prophage 49
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	561123	562617	1063121		Bacillus_phage(100.0%)	1	NA	NA
WP_044126539.1|561123_562617_-	sensor histidine kinase KdpD	NA	W8CYF6	Bacillus_phage	29.8	1.1e-21
>prophage 50
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	566056	567919	1063121		Acanthocystis_turfacea_chlorella_virus(100.0%)	1	NA	NA
WP_158128764.1|566056_567919_-	potassium transporter Kup	NA	A7K9V6	Acanthocystis_turfacea_chlorella_virus	33.1	8.9e-69
>prophage 51
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	574713	581053	1063121		Bacillus_phage(66.67%)	3	NA	NA
WP_080285562.1|574713_576774_-	hybrid sensor histidine kinase/response regulator	NA	W8CYM9	Bacillus_phage	33.9	7.2e-11
WP_044126548.1|576870_579912_-	SMC family ATPase	NA	G3MAB6	Bacillus_virus	23.7	6.7e-05
WP_033932056.1|579913_581053_-	exonuclease SbcCD subunit D	NA	A0A217ER54	Bacillus_phage	24.5	2.6e-10
>prophage 52
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	588621	591214	1063121		Vibrio_virus(50.0%)	2	NA	NA
WP_001888349.1|588621_589089_-	anaerobic ribonucleoside-triphosphate reductase-activating protein	NA	A0A2H5BH04	Vibrio_virus	63.6	1.2e-54
WP_000802768.1|589093_591214_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	64.7	3.5e-271
>prophage 53
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	606319	608536	1063121	transposase	Staphylococcus_prophage(50.0%)	3	NA	NA
WP_113592640.1|606319_607279_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	37.1	4.3e-43
WP_158128766.1|607301_607718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019829910.1|607882_608536_-	peptidoglycan DD-metalloendopeptidase family protein	NA	W8ED04	Mycobacterium_phage	33.3	2.9e-06
>prophage 54
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	635083	636043	1063121	transposase	Staphylococcus_prophage(100.0%)	1	NA	NA
WP_113592640.1|635083_636043_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	37.1	4.3e-43
>prophage 55
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	651803	652298	1063121		Planktothrix_phage(100.0%)	1	NA	NA
WP_158128770.1|651803_652298_-	GNAT family N-acetyltransferase	NA	G9BWD5	Planktothrix_phage	31.0	4.9e-06
>prophage 56
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	655650	656166	1063121		Morganella_phage(100.0%)	1	NA	NA
WP_158128774.1|655650_656166_-	lipocalin	NA	A0A1W6JNX6	Morganella_phage	50.0	7.7e-47
>prophage 57
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	661690	663030	1063121		Escherichia_phage(50.0%)	4	NA	NA
WP_000351248.1|661690_662092_-	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A222YZ88	Escherichia_phage	29.8	9.4e-08
WP_001080654.1|662091_662262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000213183.1|662501_662750_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_000221352.1|662739_663030_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	54.3	1.6e-17
>prophage 58
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	666744	679971	1063121	tRNA	Golden_Marseillevirus(20.0%)	11	NA	NA
WP_002051085.1|666744_667383_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	35.0	5.7e-15
WP_158128777.1|667529_668045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001138366.1|669384_669738_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_001885060.1|669779_669974_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001894072.1|670077_670629_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	35.1	9.2e-14
WP_001121787.1|670632_672561_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.6	2.6e-127
WP_000139210.1|672853_673984_-	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_001287801.1|674227_674851_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000993302.1|675238_676546_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.5	9.6e-102
WP_000361811.1|676582_676963_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_044128085.1|677106_679971_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.3	3.2e-267
>prophage 59
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	683680	688635	1063121		Stx2-converting_phage(50.0%)	3	NA	NA
WP_080285762.1|683680_684850_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	45.4	8.6e-86
WP_044127751.1|685014_686688_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_080285763.1|686703_688635_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	36.8	4.2e-29
>prophage 60
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	694356	695028	1063121		Bacillus_phage(100.0%)	1	NA	NA
WP_080483731.1|694356_695028_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.8	5.0e-22
>prophage 61
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	698293	698992	1063121		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_080285765.1|698293_698992_-	CatB-related O-acetyltransferase	NA	M1HKK6	Paramecium_bursaria_Chlorella_virus	32.1	2.1e-18
>prophage 62
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	710532	712996	1063121		Bacillus_phage(50.0%)	2	NA	NA
WP_076007927.1|710532_712182_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	26.5	1.4e-17
WP_001189466.1|712426_712996_+	phosphoribosyl-AMP cyclohydrolase	NA	M4QRU0	Micromonas_pusilla_virus	35.3	1.2e-19
>prophage 63
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	721290	723936	1063121		Bacillus_virus(50.0%)	3	NA	NA
WP_158128785.1|721290_722055_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	27.3	1.2e-14
WP_113598292.1|722057_723008_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_000735136.1|722997_723936_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	43.9	1.1e-70
>prophage 64
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	726962	808808	1063121	protease,terminase,portal,integrase,head,capsid,tail,transposase	Vibrio_phage(73.47%)	79	794146:794161	812195:812210
WP_095473396.1|726962_729719_+|protease	M6 family metalloprotease PrtV	protease	NA	NA	NA	NA
WP_158128786.1|729794_730649_-	lipase secretion chaperone	NA	NA	NA	NA	NA
WP_158128787.1|730658_731597_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_000586207.1|731944_733591_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	31.1	1.9e-22
WP_158128788.1|735751_736672_+|transposase	IS5 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	91.7	7.3e-165
WP_071179029.1|738023_739280_+	thermolabile hemolysin	NA	NA	NA	NA	NA
WP_044126865.1|739400_740480_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.3	4.4e-20
WP_044126864.1|740470_740737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001893346.1|740950_742195_+	multidrug efflux MFS transporter EmrD	NA	NA	NA	NA	NA
WP_001891906.1|742589_744179_+	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA	NA
WP_080285598.1|744256_745306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044126860.1|745480_747427_+	hypothetical protein	NA	W8CYF6	Bacillus_phage	24.4	7.3e-05
WP_000362852.1|747484_749026_-	DUF3369 domain-containing protein	NA	NA	NA	NA	NA
WP_044126856.1|749221_749749_-	nicotinate-nicotinamide nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_044126853.1|749851_750682_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	46.7	3.5e-57
WP_000967514.1|750931_752260_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA	NA
WP_044126851.1|752450_753845_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.4	1.3e-48
WP_158128789.1|756903_758535_-	hypothetical protein	NA	A0A160DHT6	Vibrio_phage	97.1	4.0e-307
WP_158128790.1|758531_759005_-	DNA-binding protein	NA	U3PDI0	Vibrio_phage	99.4	2.5e-76
WP_158128791.1|758992_759889_-	hypothetical protein	NA	U3PIM3	Vibrio_phage	91.6	9.7e-146
WP_158128792.1|759892_760375_-	hypothetical protein	NA	A0A1D9C9S5	Salinivibrio_phage	48.8	1.8e-34
WP_158128793.1|760374_762267_-	hypothetical protein	NA	A0A160DJT8	Vibrio_phage	62.5	8.4e-99
WP_158128794.1|762263_762854_-|tail	phage tail protein	tail	U3PB79	Vibrio_phage	71.4	6.1e-80
WP_158128795.1|762846_764052_-	hypothetical protein	NA	R9TRT3	Vibrio_phage	70.6	1.4e-160
WP_001113003.1|764048_764381_-	DUF2590 family protein	NA	U3PIM1	Vibrio_phage	100.0	1.7e-55
WP_158128796.1|764370_766188_-|tail	phage tail tape measure protein	tail	U3PFL8	Vibrio_phage	99.5	0.0e+00
WP_113594231.1|766384_766666_-	hypothetical protein	NA	A0A160DHS7	Vibrio_phage	93.5	4.1e-42
WP_158128797.1|766873_767215_-	hypothetical protein	NA	U3PB75	Vibrio_phage	99.1	4.0e-52
WP_158128798.1|767189_767777_-	glycoside hydrolase family protein	NA	U3PDH1	Vibrio_phage	99.0	2.8e-109
WP_001899725.1|767763_767976_-	hypothetical protein	NA	U3PIL8	Vibrio_phage	85.5	5.6e-28
WP_114742987.1|767972_768182_-	TraR/DksA family transcriptional regulator	NA	U3PFL5	Vibrio_phage	89.6	1.5e-28
WP_158128799.1|768196_768655_-	DUF2597 family protein	NA	U3PCG7	Vibrio_phage	95.4	2.3e-79
WP_158128800.1|768654_769764_-	DUF2586 family protein	NA	U3PB71	Vibrio_phage	96.2	6.2e-203
WP_000461678.1|769765_770425_-	phage virion morphogenesis protein	NA	U3PDG7	Vibrio_phage	99.5	3.4e-116
WP_158128801.1|770411_770900_-	hypothetical protein	NA	U3PIL4	Vibrio_phage	96.9	1.2e-86
WP_061051036.1|770896_771358_-|head	head completion/stabilization protein	head	U3PFL1	Vibrio_phage	99.3	5.8e-78
WP_123161946.1|771464_772187_-|terminase	terminase endonuclease subunit	terminase	U3PCG2	Vibrio_phage	93.0	3.3e-120
WP_000930691.1|772197_773199_-|capsid	phage major capsid protein, P2 family	capsid	R9TPZ5	Vibrio_phage	61.9	1.5e-107
WP_158128802.1|773198_774086_-|capsid	capsid protein	capsid	R9TRS3	Vibrio_phage	62.8	7.7e-95
WP_158128803.1|774259_776080_+|terminase	terminase	terminase	U3PIL1	Vibrio_phage	93.9	0.0e+00
WP_158128804.1|776076_777123_+|portal	phage portal protein	portal	U3PFK6	Vibrio_phage	98.6	5.0e-202
WP_158128805.1|777106_777322_+	hypothetical protein	NA	Q8HA53	Vibrio_phage	100.0	8.2e-35
WP_158128806.1|777390_777642_+	transcriptional regulator	NA	Q8HA54	Vibrio_phage	100.0	1.9e-43
WP_158128807.1|777636_777855_-	hypothetical protein	NA	Q8HA55	Vibrio_phage	100.0	9.5e-31
WP_158128808.1|778504_779239_+	DUF4760 domain-containing protein	NA	Q8HA56	Vibrio_phage	100.0	8.2e-135
WP_000027970.1|780639_781101_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000895452.1|781190_781427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001071097.1|781389_781752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000186150.1|781756_782089_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001278803.1|782090_783062_+	hypothetical protein	NA	J9SW46	Pseudomonas_phage	36.8	2.9e-18
WP_000992438.1|783068_784826_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q5ZR04	Pseudomonas_phage	34.5	1.6e-91
WP_001881558.1|784755_785907_+	AAA family ATPase	NA	J9SNL1	Pseudomonas_phage	38.4	1.0e-46
WP_046127082.1|785909_786371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001059182.1|786367_786601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000879671.1|787180_787555_+	middle operon regulator	NA	NA	NA	NA	NA
WP_000035502.1|787541_787862_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_000059472.1|787880_788459_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001881550.1|788513_788891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000290080.1|788939_789299_+	hypothetical protein	NA	A0A2I7S9E0	Vibrio_phage	67.8	3.7e-40
WP_148525342.1|789433_791125_+	tape measure protein	NA	A0A2I7S9D9	Vibrio_phage	54.3	2.2e-151
WP_061051025.1|792770_793058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001198812.1|793256_793484_-	hypothetical protein	NA	U3PIK2	Vibrio_phage	61.3	2.6e-23
WP_158128809.1|793483_794002_-	hypothetical protein	NA	U3PB56	Vibrio_phage	75.9	3.7e-57
WP_001272768.1|794083_794518_-	hypothetical protein	NA	U3PDF0	Vibrio_phage	98.6	9.0e-73
794146:794161	attL	TCACTTTGTTCATCTC	NA	NA	NA	NA
WP_000253092.1|794530_795070_-	hypothetical protein	NA	U3PIJ8	Vibrio_phage	98.9	6.1e-95
WP_000959091.1|795180_795393_-	hypothetical protein	NA	U3PFJ1	Vibrio_phage	78.6	3.2e-23
WP_158128810.1|795558_796212_+	chromosome partitioning protein ParA	NA	A0A166YHA0	Vibrio_phage	71.0	1.1e-79
WP_158128811.1|796263_797427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158128812.1|797413_797761_+	DUF4325 domain-containing protein	NA	NA	NA	NA	NA
WP_158128813.1|797757_798285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158128814.1|798310_799249_-	sce7725 family protein	NA	NA	NA	NA	NA
WP_158128815.1|799269_800109_-	sce7726 family protein	NA	NA	NA	NA	NA
WP_158128816.1|800389_801421_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S6L016	Salmonella_phage	53.2	3.3e-97
WP_158128817.1|801777_802527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001217709.1|803127_804171_-	GMP reductase	NA	A0A0N9Q9A5	Chrysochromulina_ericina_virus	53.6	1.8e-98
WP_044126845.1|804828_805377_+	outer membrane beta-barrel protein	NA	NA	NA	NA	NA
WP_044126844.1|805442_806285_+	potassium channel family protein	NA	A0A1B0Y2S3	Lactobacillus_phage	44.0	7.5e-07
WP_044126843.1|806286_807630_-	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA	NA
WP_000935710.1|807812_808808_+	2-hydroxyacid dehydrogenase	NA	M1HUW8	Acanthocystis_turfacea_Chlorella_virus	42.7	9.6e-70
812195:812210	attR	GAGATGAACAAAGTGA	NA	NA	NA	NA
>prophage 65
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	813719	813929	1063121		Lactococcus_phage(100.0%)	1	NA	NA
WP_000106983.1|813719_813929_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	68.3	5.7e-17
>prophage 66
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	822613	824530	1063121		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_044126831.1|822613_824530_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	34.8	1.7e-22
>prophage 67
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	832959	833172	1063121		Morganella_phage(100.0%)	1	NA	NA
WP_000078819.1|832959_833172_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	62.9	1.8e-18
>prophage 68
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	848035	848542	1063121		Synechococcus_phage(100.0%)	1	NA	NA
WP_001898034.1|848035_848542_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	39.3	9.0e-16
>prophage 69
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	859169	862546	1063121		Hokovirus(50.0%)	2	NA	NA
WP_044126805.1|859169_861224_+	sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	25.1	7.9e-10
WP_080285591.1|861337_862546_-	Spindolin	NA	S5MR53	Choristoneura_rosaceana_nucleopolyhedrovirus	33.6	2.9e-28
>prophage 70
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	867906	874279	1063121		Pectobacterium_phage(25.0%)	6	NA	NA
WP_000365214.1|867906_868641_-	nicotinamide riboside transporter PnuC	NA	A0A1L2CV72	Pectobacterium_phage	21.9	3.8e-07
WP_002043258.1|868766_869771_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_044126799.1|869781_870702_-	ribokinase	NA	E3SL45	Synechococcus_phage	38.6	3.4e-05
WP_001885121.1|870839_871724_-	ribose ABC transporter substrate-binding protein RbsB	NA	C6ZCU4	Enterobacteria_phage	23.0	9.6e-05
WP_001887740.1|871778_872780_-	ribose ABC transporter permease	NA	NA	NA	NA	NA
WP_000189456.1|872776_874279_-	ribose ABC transporter ATP-binding protein RbsA	NA	A0A2H4PQG7	Staphylococcus_phage	26.7	1.1e-16
>prophage 71
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	877621	879820	1063121		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_158128821.1|877621_879820_-	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	24.2	2.2e-29
>prophage 72
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	888585	965578	1063121	protease,plate,transposase	uncultured_Caudovirales_phage(18.75%)	62	NA	NA
WP_158128823.1|888585_891195_-	type VI secretion system ATPase TssH	NA	H6X3M6	Enterobacteria_phage	29.5	3.7e-89
WP_158128845.1|891220_891985_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_158106124.1|892062_893385_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_000458007.1|893433_894768_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_019829522.1|894774_895251_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_019829523.1|895253_896741_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
WP_000510180.1|896743_897760_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_000189792.1|897723_899493_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000221000.1|899498_899936_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_001882966.1|899938_901417_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_000031391.1|901457_901964_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_080285588.1|902394_903399_-	sel1 repeat family protein	NA	NA	NA	NA	NA
WP_000526406.1|903382_903667_-	type VI secretion system PAAR protein	NA	NA	NA	NA	NA
WP_025987785.1|904449_906129_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_001006513.1|906170_907949_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	26.4	1.2e-14
WP_080112197.1|908129_908789_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_142549146.1|908964_910521_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_080308778.1|910520_910892_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_158128824.1|910928_911966_-	oxidoreductase	NA	NA	NA	NA	NA
WP_001069591.1|911997_913305_-	nicotinate phosphoribosyltransferase	NA	A0A2L0UZQ6	Agrobacterium_phage	31.7	3.8e-42
WP_000637375.1|913588_914305_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_158128825.1|914317_915559_-	endo-1,4-beta-xylanase	NA	NA	NA	NA	NA
WP_148515362.1|915601_916300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000382999.1|916568_916925_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000706540.1|917424_918054_+	cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase	NA	A0A2I7SAF7	Vibrio_phage	35.6	8.3e-19
WP_001891137.1|918224_918521_-	DUF134 domain-containing protein	NA	NA	NA	NA	NA
WP_019829533.1|918750_919644_+	DMT family transporter	NA	NA	NA	NA	NA
WP_044126780.1|919908_921210_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
WP_080285586.1|921339_921504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001882949.1|921577_921958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044126779.1|922058_923261_-	MFS transporter	NA	NA	NA	NA	NA
WP_000426189.1|923441_923888_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_044126777.1|923929_925141_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_044126776.1|925230_926118_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_158128826.1|926339_928163_+	EAL domain-containing protein	NA	A0A127AWB9	Bacillus_phage	28.1	1.3e-08
WP_158128827.1|928280_929573_-	peptidoglycan DD-metalloendopeptidase family protein	NA	Q8SBN9	Clostridium_phage	51.1	1.1e-17
WP_001885150.1|929764_930097_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
WP_000457419.1|930401_932063_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	25.4	3.4e-43
WP_001153651.1|932498_933875_+	YjiH family protein	NA	NA	NA	NA	NA
WP_001885151.1|934165_934633_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_001097201.1|934629_935730_+	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	30.6	5.7e-15
WP_001905839.1|935776_936556_-	phosphate ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	28.0	1.1e-12
WP_001912363.1|936560_937424_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_000150748.1|937429_938350_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_000754393.1|938427_939249_-	phosphate ABC transporter substrate-binding protein	NA	Q58MA7	Prochlorococcus_phage	27.9	1.0e-08
WP_001249516.1|939619_941263_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	47.6	3.4e-27
WP_000855104.1|941393_941957_-	DUF1566 domain-containing protein	NA	NA	NA	NA	NA
WP_148500548.1|941953_943396_-	DUF1566 domain-containing protein	NA	NA	NA	NA	NA
WP_114732134.1|943392_945699_-	proconvertase P-domain protein	NA	NA	NA	NA	NA
WP_158128828.1|945708_947850_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_114732840.1|947849_949847_-	S9 family peptidase	NA	F2Y2S4	Organic_Lake_phycodnavirus	30.1	9.4e-08
WP_158128829.1|950059_951418_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.0	2.6e-41
WP_001038496.1|951947_952196_+	membrane protein	NA	NA	NA	NA	NA
WP_000270236.1|952281_953202_-	L,D-transpeptidase family protein	NA	NA	NA	NA	NA
WP_044126767.1|953210_954620_-	deoxyribodipyrimidine photo-lyase	NA	A0A1V0SGL1	Hokovirus	31.7	8.8e-61
WP_044126766.1|954629_955427_-	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	30.7	5.8e-17
WP_076007858.1|955416_956385_-	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA	NA
WP_000224891.1|956691_957402_+	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_001132380.1|957466_958936_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001891126.1|959054_960578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000449159.1|960558_962139_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	41.3	3.3e-16
WP_044126765.1|962323_965578_-|protease	protease	protease	NA	NA	NA	NA
>prophage 73
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	977838	984025	1063121		uncultured_Caudovirales_phage(50.0%)	4	NA	NA
WP_000777296.1|977838_979404_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.1	1.8e-14
WP_001882909.1|979524_980367_-	arginase	NA	NA	NA	NA	NA
WP_001006058.1|980367_981102_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001886534.1|981478_984025_-	chitinase	NA	B0FDP2	Orgyia_leucostigma_nucleopolyhedrovirus	46.5	7.5e-143
>prophage 74
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	990485	991874	1063121	transposase	Wolbachia_phage(100.0%)	1	NA	NA
WP_158128830.1|990485_991874_-|transposase	IS4 family transposase	transposase	Q9JMP3	Wolbachia_phage	27.6	2.2e-48
>prophage 75
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	997866	999963	1063121		Ralstonia_phage(100.0%)	1	NA	NA
WP_158128832.1|997866_999963_-	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	26.7	2.2e-31
>prophage 76
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	1005665	1008119	1063121		Iris_mild_mosaic_virus(100.0%)	1	NA	NA
WP_095456448.1|1005665_1008119_-	glycogen/starch/alpha-glucan phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	4.4e-15
>prophage 77
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	1012105	1014743	1063121		uncultured_Caudovirales_phage(50.0%)	2	NA	NA
WP_158128834.1|1012105_1013767_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	50.0	1.1e-28
WP_095459429.1|1013867_1014743_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	28.2	7.3e-21
>prophage 78
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	1020573	1026115	1063121		Enterobacteria_phage(33.33%)	4	NA	NA
WP_000817997.1|1020573_1021791_+	ParA family protein	NA	Q1MVJ3	Enterobacteria_phage	28.8	5.5e-35
WP_001886548.1|1021798_1022770_+	ParB/RepB/Spo0J family partition protein	NA	Q6UAV8	Klebsiella_phage	32.4	4.0e-20
WP_000846694.1|1022829_1023861_-	spermidine/putrescine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_158128836.1|1024081_1026115_+	GNAT family N-acetyltransferase	NA	Q56AQ2	Bacillus_thuringiensis_phage	32.0	9.0e-14
>prophage 79
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	1034746	1036207	1063121		Bacillus_virus(100.0%)	1	NA	NA
WP_080008136.1|1034746_1036207_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	27.6	7.6e-15
>prophage 80
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	1039931	1040309	1063121		Bacillus_phage(100.0%)	1	NA	NA
WP_001882871.1|1039931_1040309_+	response regulator	NA	W8CYM9	Bacillus_phage	36.8	2.6e-12
>prophage 81
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	1048112	1055484	1063121		Bacillus_phage(66.67%)	5	NA	NA
WP_001886567.1|1048112_1049267_+	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.1	3.8e-09
WP_032472951.1|1049276_1049576_+	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_001882867.1|1049599_1051306_+	SpoIIE family protein phosphatase	NA	W8CYM9	Bacillus_phage	33.1	8.9e-07
WP_000265356.1|1051564_1053235_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_001154355.1|1053369_1055484_-	type I secretion system permease/ATPase	NA	W8CYL7	Bacillus_phage	26.8	1.2e-32
>prophage 82
NZ_CP046748	Vibrio cholerae strain 3541-04 chromosome 2, complete sequence	1063121	1060364	1061105	1063121		Vibrio_virus(100.0%)	1	NA	NA
WP_032472948.1|1060364_1061105_-	helix-turn-helix transcriptional regulator	NA	A2I306	Vibrio_virus	42.9	2.5e-38
