The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP046744	Vibrio cholerae strain 3569-08 chromosome 1, complete sequence	2969890	807255	844070	2969890		Vibrio_phage(62.5%)	30	NA	NA
WP_001161489.1|807255_807423_+	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_000170632.1|807415_807583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001265358.1|808621_809188_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001881266.1|809349_810918_+	replication protein	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
WP_001881265.1|810922_811207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001052672.1|811336_812029_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001161489.1|812106_812274_+	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_000170634.1|812266_812851_+	DNA-binding protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
WP_000593519.1|813084_813459_-	cholera enterotoxin binding subunit CtxB	NA	A0A142I6Y1	Vibrio_phage	100.0	5.9e-65
WP_001888508.1|813455_814232_-	cholera enterotoxin catalytic subunit CtxA	NA	A0A023W6A1	Vibrio_virus	100.0	7.8e-152
WP_050926705.1|814331_815531_-	zonula occludens toxin ZOT	NA	A0A023W604	Vibrio_virus	100.0	5.3e-240
WP_000979342.1|815527_815821_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_080480141.1|815817_817101_-	hypothetical protein	NA	A0A142I701	Vibrio_phage	98.4	2.7e-218
WP_000493022.1|817111_817360_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001888513.1|817495_817876_-	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	4.0e-69
WP_019830347.1|817853_818933_-	hypothetical protein	NA	A0A023W5Z8	Vibrio_virus	100.0	2.2e-213
WP_000492997.1|819064_819400_+	helix-turn-helix transcriptional regulator	NA	A0A0N9HJE7	Vibrio_phage	100.0	4.7e-53
WP_000593519.1|820007_820382_-	cholera enterotoxin binding subunit CtxB	NA	A0A142I6Y1	Vibrio_phage	100.0	5.9e-65
WP_001888508.1|820378_821155_-	cholera enterotoxin catalytic subunit CtxA	NA	A0A023W6A1	Vibrio_virus	100.0	7.8e-152
WP_050926705.1|821254_822454_-	zonula occludens toxin ZOT	NA	A0A023W604	Vibrio_virus	100.0	5.3e-240
WP_000979342.1|822450_822744_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_080480141.1|822740_824024_-	hypothetical protein	NA	A0A142I701	Vibrio_phage	98.4	2.7e-218
WP_000493022.1|824034_824283_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001888513.1|824418_824799_-	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	4.0e-69
WP_019830347.1|824776_825856_-	hypothetical protein	NA	A0A023W5Z8	Vibrio_virus	100.0	2.2e-213
WP_000492997.1|825987_826323_+	helix-turn-helix transcriptional regulator	NA	A0A0N9HJE7	Vibrio_phage	100.0	4.7e-53
WP_080314558.1|827042_840719_-	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
WP_001881196.1|840703_841165_-	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA	NA
WP_000514481.1|841190_841550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149591715.1|841964_844070_+	RTX toxin T1SS ABC transporter subunit RtxB	NA	W8CYL7	Bacillus_phage	27.1	4.9e-39
>prophage 2
NZ_CP046744	Vibrio cholerae strain 3569-08 chromosome 1, complete sequence	2969890	1582174	1589367	2969890		Anguillid_herpesvirus(16.67%)	9	NA	NA
WP_001162850.1|1582174_1582603_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
WP_000107237.1|1582806_1584096_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_000872176.1|1584315_1584510_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_001124187.1|1584558_1584897_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_001196560.1|1584910_1586761_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
WP_001105747.1|1586784_1587300_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_000301571.1|1587348_1587672_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_000331703.1|1587732_1588116_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000775253.1|1588152_1589367_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
>prophage 3
NZ_CP046744	Vibrio cholerae strain 3569-08 chromosome 1, complete sequence	2969890	1820987	1828250	2969890		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_001279365.1|1820987_1821875_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
WP_001895515.1|1822142_1824731_+	DNA mismatch repair protein MutS	NA	A0A1V0SJ67	Klosneuvirus	25.7	2.2e-33
WP_000116737.1|1824823_1825831_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_000177568.1|1825904_1826840_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000002982.1|1826839_1827466_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_001883363.1|1827458_1828250_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.6	8.4e-69
>prophage 4
NZ_CP046744	Vibrio cholerae strain 3569-08 chromosome 1, complete sequence	2969890	2515172	2548811	2969890	transposase,tail,plate	Vibrio_phage(92.86%)	51	NA	NA
WP_001065600.1|2515172_2515709_-	hypothetical protein	NA	H9C146	Vibrio_phage	58.1	6.8e-30
WP_001895339.1|2515708_2516560_-	hypothetical protein	NA	Q8HA52	Vibrio_phage	60.4	1.9e-42
WP_000510163.1|2516559_2517147_-	DUF2313 domain-containing protein	NA	A0A2I7S9L6	Vibrio_phage	79.5	2.1e-93
WP_001147110.1|2517131_2518199_-|plate	baseplate J/gp47 family protein	plate	A0A2I7S9E5	Vibrio_phage	72.1	1.6e-147
WP_000095018.1|2518188_2518638_-	hypothetical protein	NA	M4MB61	Vibrio_phage	73.6	1.1e-54
WP_001003653.1|2518640_2519255_-|plate	phage baseplate assembly protein V	plate	M4MCP6	Vibrio_phage	70.2	4.0e-74
WP_001286435.1|2519251_2520331_-	hypothetical protein	NA	M4M9L5	Vibrio_phage	75.4	3.0e-157
WP_000863380.1|2520323_2521643_-	DMT family permease	NA	A0A2I7S9E8	Vibrio_phage	68.0	5.0e-167
WP_001284562.1|2521654_2523358_-	tape measure protein	NA	A0A2I7S9D9	Vibrio_phage	52.9	3.4e-147
WP_000996598.1|2523483_2523843_-	hypothetical protein	NA	A0A2I7S9E0	Vibrio_phage	64.1	5.0e-37
WP_001895328.1|2523842_2524196_-|tail	tail tube protein	tail	A0A2I7S9D5	Vibrio_phage	69.2	7.9e-43
WP_001128141.1|2524210_2525695_-|tail	tail sheath protein	tail	M1Q565	Vibrio_phage	72.3	1.5e-207
WP_000437435.1|2525697_2525898_-	DUF2635 domain-containing protein	NA	NA	NA	NA	NA
WP_000100991.1|2525911_2526511_-	hypothetical protein	NA	M4MHF0	Vibrio_phage	61.2	6.4e-69
WP_000513061.1|2526507_2527050_-	phage morphogeneis protein	NA	A0A2I7S9D7	Vibrio_phage	74.9	3.3e-72
WP_001029276.1|2527049_2527484_-	DUF1320 domain-containing protein	NA	A0A2I7S9E9	Vibrio_phage	88.2	9.6e-67
WP_000004756.1|2527489_2528065_-	hypothetical protein	NA	M4M9M3	Vibrio_phage	54.5	4.0e-20
WP_001218331.1|2528153_2529053_-	hypothetical protein	NA	M4MB71	Vibrio_phage	81.4	2.6e-146
WP_001262460.1|2529055_2530012_-	hypothetical protein	NA	M1Q578	Vibrio_phage	59.8	4.7e-98
WP_001249579.1|2530344_2530629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000638762.1|2530628_2531264_-	hypothetical protein	NA	A0A1V0E8A2	Vibrio_phage	47.3	1.7e-40
WP_000638754.1|2531260_2531773_-	hypothetical protein	NA	A0A0F6N5P8	Escherichia_phage	45.6	5.3e-32
WP_000246042.1|2531769_2532018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001895334.1|2532029_2532803_-	hypothetical protein	NA	M1PVV7	Vibrio_phage	75.5	1.3e-114
WP_000027033.1|2532795_2534355_-	DUF935 domain-containing protein	NA	M4M9P3	Vibrio_phage	76.1	3.5e-228
WP_001105344.1|2534351_2535917_-	hypothetical protein	NA	M4MHG0	Vibrio_phage	78.0	4.5e-231
WP_001195537.1|2535917_2536484_-	DUF3486 family protein	NA	M4MCR3	Vibrio_phage	55.0	3.2e-46
WP_000008606.1|2536495_2536786_-	hypothetical protein	NA	A0A2I7S9D8	Vibrio_phage	82.3	3.9e-40
WP_000362983.1|2536794_2537094_-	DUF2730 family protein	NA	M1Q558	Vibrio_phage	70.0	1.1e-29
WP_001281317.1|2537093_2537324_-	conjugal transfer protein TraR	NA	M4MHG5	Vibrio_phage	63.2	8.8e-19
WP_001120998.1|2537320_2537920_-	hypothetical protein	NA	M1NVP4	Vibrio_phage	57.3	5.8e-46
WP_000493682.1|2538182_2538740_-	hypothetical protein	NA	A0A2I7S9B9	Vibrio_phage	72.1	1.8e-70
WP_001029055.1|2538824_2539241_-	hypothetical protein	NA	M4MHG9	Vibrio_phage	50.0	6.3e-31
WP_000837433.1|2539319_2539766_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000040562.1|2539755_2540301_-	regulatory protein GemA	NA	A0A2I7S9B8	Vibrio_phage	58.2	4.5e-53
WP_000404914.1|2540313_2540592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000466681.1|2540594_2540828_-	hypothetical protein	NA	M4M9N5	Vibrio_phage	66.2	4.1e-24
WP_000762331.1|2540907_2541438_-	hypothetical protein	NA	A0A0M3LPP6	Mannheimia_phage	42.9	2.2e-28
WP_000856884.1|2541434_2541704_-	DUF3850 domain-containing protein	NA	C1KFE1	Lactobacillus_virus	47.6	2.5e-12
WP_001895326.1|2541706_2541901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000413231.1|2542053_2542251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000551393.1|2542234_2542477_-	hypothetical protein	NA	M4MCS5	Vibrio_phage	62.0	4.2e-19
WP_000512064.1|2542469_2542742_-	hypothetical protein	NA	A0A2I7S9G2	Vibrio_phage	61.2	2.9e-21
WP_001192102.1|2542751_2543366_-	DUF3164 family protein	NA	M4MHH7	Vibrio_phage	79.6	2.0e-86
WP_001032752.1|2543515_2543890_-	hypothetical protein	NA	M4MB90	Vibrio_phage	59.0	2.9e-27
WP_001216028.1|2543899_2544469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000157299.1|2544478_2544703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000800334.1|2544710_2545655_-	AAA family ATPase	NA	M4M9P4	Vibrio_phage	73.7	1.1e-126
WP_001895336.1|2545681_2547685_-|transposase	transposase	transposase	A0A2I7S9A8	Vibrio_phage	69.8	2.2e-275
WP_000373567.1|2547696_2547921_-	transcriptional regulator	NA	M1PVU4	Vibrio_phage	61.9	2.3e-16
WP_000005494.1|2548073_2548811_+	transcriptional regulator	NA	A0A2I7S9A5	Vibrio_phage	61.3	1.4e-81
>prophage 5
NZ_CP046744	Vibrio cholerae strain 3569-08 chromosome 1, complete sequence	2969890	2924850	2931466	2969890		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000210573.1|2924850_2925984_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
WP_001890340.1|2925992_2927246_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000543544.1|2927345_2927795_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_001131994.1|2927820_2928924_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
WP_000493874.1|2928928_2929582_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001122865.1|2929622_2930732_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000864130.1|2930995_2931466_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
