The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP046736	Vibrio cholerae strain 3528-08 chromosome 1, complete sequence	3101042	124075	131339	3101042		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_001888660.1|124075_124963_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	3.2e-56
WP_158106282.1|125230_127819_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	1.7e-33
WP_000116735.1|127912_128920_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_000177561.1|128993_129929_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000002982.1|129928_130555_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_001888657.1|130547_131339_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.0	5.0e-69
>prophage 2
NZ_CP046736	Vibrio cholerae strain 3528-08 chromosome 1, complete sequence	3101042	426785	434981	3101042		Micromonas_sp._RCC1109_virus(16.67%)	7	NA	NA
WP_001887557.1|426785_428405_-	aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	27.5	1.1e-11
WP_001887558.1|428397_430218_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.5	3.1e-26
WP_001887559.1|430226_431369_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	E5ES42	Bathycoccus_sp._RCC1105_virus	29.2	8.5e-38
WP_050501597.1|431365_432553_-	formyl transferase	NA	A0A220T679	Eptesipox_virus	41.9	2.0e-05
WP_032472847.1|432524_432947_-	WxcM-like domain-containing protein	NA	NA	NA	NA	NA
WP_019827646.1|432943_433825_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	68.1	4.0e-112
WP_000699461.1|433907_434981_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	51.2	7.6e-97
>prophage 3
NZ_CP046736	Vibrio cholerae strain 3528-08 chromosome 1, complete sequence	3101042	1246048	1252660	3101042		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000210573.1|1246048_1247182_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
WP_001893543.1|1247190_1248444_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	3.9e-100
WP_000543544.1|1248543_1248993_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_001888607.1|1249018_1250122_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.5e-44
WP_000493874.1|1250126_1250780_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001122865.1|1250820_1251930_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000864130.1|1252189_1252660_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
>prophage 4
NZ_CP046736	Vibrio cholerae strain 3528-08 chromosome 1, complete sequence	3101042	1745778	1830581	3101042	portal,transposase,integrase,lysis,head,capsid,protease,tail,terminase	Vibrio_phage(89.13%)	100	1739558:1739574	1807000:1807016
1739558:1739574	attL	TCAGCAAAAAAGCTTAC	NA	NA	NA	NA
WP_001886870.1|1745778_1750302_+|protease	SslE/AcfD family lipoprotein zinc metalloprotease	protease	NA	NA	NA	NA
WP_001886869.1|1751179_1752454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001013534.1|1752557_1753370_-	solute-binding protein	NA	NA	NA	NA	NA
WP_001886868.1|1753609_1754443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158106420.1|1754429_1754633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001886867.1|1754798_1756391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032472471.1|1756689_1757331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032472472.1|1757472_1757727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000734971.1|1757728_1758262_+	type III secretion protein	NA	NA	NA	NA	NA
WP_000830400.1|1758263_1758722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001001657.1|1758751_1759240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001886865.1|1759252_1760620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001886864.1|1760620_1761766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000858304.1|1762122_1763172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000026208.1|1763182_1763908_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001246761.1|1763952_1764555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032467989.1|1764481_1764889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032472473.1|1764899_1765475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158106421.1|1765772_1769759_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088131832.1|1769871_1770483_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001886860.1|1770479_1772363_+	type III secretion protein	NA	NA	NA	NA	NA
WP_001886859.1|1772383_1773436_+	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_001886858.1|1773410_1774217_+	OmpA family protein	NA	NA	NA	NA	NA
WP_000842251.1|1774206_1774599_+	VPA1352 family putative T3SS effector	NA	NA	NA	NA	NA
WP_158106422.1|1774576_1775590_+	VPA1351 family putative T3SS effector	NA	NA	NA	NA	NA
WP_095461408.1|1775595_1776249_+	VPA1350 family putative T3SS effector	NA	NA	NA	NA	NA
WP_000861356.1|1776263_1776479_+	FliM/FliN family flagellar motor switch protein	NA	NA	NA	NA	NA
WP_158106423.1|1776691_1777243_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_139284602.1|1778095_1778395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001910588.1|1778443_1779130_+	EscR/YscR/HrcR family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
WP_001186128.1|1779132_1779816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000181845.1|1779808_1780057_+	VPA1340 family putative T3SS effector	NA	NA	NA	NA	NA
WP_002052990.1|1780046_1781504_+	vcsC2	NA	G4WZN6	Enterobacteria_phage	23.3	1.3e-06
WP_000922351.1|1781503_1782766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088136745.1|1782845_1783115_+	VPA1337 family putative T3SS effector	NA	NA	NA	NA	NA
WP_001886853.1|1783107_1783848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000217070.1|1783834_1784068_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
WP_000854879.1|1784082_1784457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000836879.1|1784457_1784943_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001886852.1|1784926_1785694_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_019829802.1|1785932_1786691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000472892.1|1786731_1787013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001886849.1|1787245_1787860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032472476.1|1788067_1788721_+	AcfA family outer membrane beta-barrel protein	NA	NA	NA	NA	NA
WP_001886848.1|1789609_1790845_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	61.4	1.0e-145
WP_001886847.1|1791446_1792853_-|tail	tail fiber domain-containing protein	tail	A0A1E1GDN9	Vibrio_phage	35.2	2.4e-13
WP_158106424.1|1792852_1794562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032472478.1|1794561_1794843_-	hypothetical protein	NA	A0A1V0E868	Vibrio_phage	60.4	1.3e-24
WP_154388724.1|1794907_1795069_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139284600.1|1795079_1796492_-	hypothetical protein	NA	A0A2I7R7L5	Vibrio_phage	36.7	3.9e-40
WP_158106425.1|1796472_1796637_-	hypothetical protein	NA	A0A1V0E896	Vibrio_phage	50.9	3.8e-08
WP_158106426.1|1796645_1800536_-	DUF1983 domain-containing protein	NA	A0A1V0E886	Vibrio_phage	79.5	0.0e+00
WP_148506517.1|1800547_1801156_-|tail	tail assembly protein	tail	A0A1V0E8A0	Vibrio_phage	70.8	4.1e-71
WP_158106427.1|1801225_1801642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158106428.1|1801974_1802802_+	hypothetical protein	NA	I6R977	Salmonella_phage	40.6	2.7e-33
WP_158106429.1|1802923_1803964_+|transposase	IS481 family transposase	transposase	A0A077SLK2	Escherichia_phage	81.8	5.0e-170
WP_158106430.1|1804060_1804843_-	peptidase P60	NA	A0A1V0E882	Vibrio_phage	54.3	2.0e-78
WP_158106431.1|1804844_1805597_-|tail	phage minor tail protein L	tail	A0A1V0E876	Vibrio_phage	78.2	5.7e-115
WP_032472482.1|1805600_1805939_-|tail	phage tail protein	tail	A0A1V0E890	Vibrio_phage	75.0	2.3e-47
WP_158106432.1|1805941_1808758_-|tail	phage tail tape measure protein	tail	A0A1V0E821	Vibrio_phage	58.7	3.8e-289
1807000:1807016	attR	GTAAGCTTTTTTGCTGA	NA	NA	NA	NA
WP_158003290.1|1808769_1808913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158106433.1|1808942_1809458_-	hypothetical protein	NA	A0A1V0E823	Vibrio_phage	70.0	1.0e-43
WP_158106434.1|1809469_1809949_-|tail	phage tail protein	tail	A0A1U9GN34	Vibrio_phage	89.8	2.5e-76
WP_032472484.1|1810029_1810398_-	DUF3168 domain-containing protein	NA	A0A1V0E8A7	Vibrio_phage	75.4	2.6e-52
WP_158106435.1|1810394_1810862_-	hypothetical protein	NA	A0A1V0E895	Vibrio_phage	82.7	1.8e-55
WP_158106436.1|1810864_1811227_-|head,tail	head-tail adaptor protein	head,tail	A0A1V0E8B6	Vibrio_phage	67.2	1.5e-44
WP_158106437.1|1811226_1811520_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A1V0E887	Vibrio_phage	68.6	1.4e-32
WP_158106438.1|1811534_1811804_-	hypothetical protein	NA	A0A1V0E889	Vibrio_phage	54.1	2.2e-08
WP_071181049.1|1811876_1813064_-|capsid	phage major capsid protein	capsid	A0A1V0E898	Vibrio_phage	79.2	1.4e-168
WP_080482709.1|1813068_1813947_-|protease	Clp protease ClpP	protease	A0A1V0E8B8	Vibrio_phage	81.8	3.2e-133
WP_001886835.1|1813949_1815257_-|portal	phage portal protein	portal	A0A1V0E8B9	Vibrio_phage	83.0	5.4e-214
WP_032472489.1|1815256_1815457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001886832.1|1815456_1817172_-|terminase	terminase large subunit	terminase	A0A1V0E8C2	Vibrio_phage	91.8	0.0e+00
WP_032472490.1|1817168_1817642_-|terminase	phage terminase small subunit P27 family	terminase	A0A1V0E8B7	Vibrio_phage	73.9	4.9e-64
WP_032472491.1|1817647_1818007_-	HNH endonuclease	NA	A0A1V0E8A5	Vibrio_phage	79.8	1.2e-51
WP_139284597.1|1818010_1818331_-	hypothetical protein	NA	A0A1V0E8K3	Vibrio_phage	55.7	1.8e-22
WP_032472493.1|1818394_1818601_-	hypothetical protein	NA	A0A1V0E8A3	Vibrio_phage	69.7	2.4e-20
WP_158106439.1|1819448_1819889_-|lysis	lysis protein	lysis	A0A1V1FDS3	Vibrio_phage	47.7	3.1e-20
WP_080285581.1|1819860_1820472_-	lysozyme	NA	A0A1V0E844	Vibrio_phage	79.5	1.3e-85
WP_044126697.1|1820458_1820644_-	hypothetical protein	NA	A0A1V0E826	Vibrio_phage	55.7	2.4e-11
WP_044126696.1|1820775_1821444_-	hypothetical protein	NA	A0A1V0E841	Vibrio_phage	60.3	4.0e-72
WP_158106440.1|1821506_1821653_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148529107.1|1821672_1822056_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158106441.1|1822066_1823080_-	DUF968 domain-containing protein	NA	A0A1U9GXE8	Vibrio_phage	67.5	4.8e-133
WP_044126693.1|1823073_1823358_-	DUF4406 domain-containing protein	NA	A0A1U9GY09	Vibrio_phage	79.6	2.9e-40
WP_044126692.1|1823354_1823618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158106442.1|1823614_1824121_-	hypothetical protein	NA	A0A1V1FCN0	Vibrio_phage	72.1	9.9e-63
WP_158106443.1|1824117_1824423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158106444.1|1824415_1824853_-	hypothetical protein	NA	A0A2I7S3S8	Vibrio_phage	32.7	4.9e-10
WP_158106445.1|1824858_1825047_-	hypothetical protein	NA	A0A1V0E836	Vibrio_phage	48.3	2.0e-08
WP_158106446.1|1825043_1825250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071181037.1|1825422_1826121_-	DNA-binding protein	NA	A0A1V0E838	Vibrio_phage	61.0	8.8e-70
WP_052382155.1|1826121_1826304_-	hypothetical protein	NA	A0A1V0E856	Vibrio_phage	40.0	4.0e-06
WP_158106447.1|1826315_1827305_-	ATPase	NA	R9TPU9	Vibrio_phage	57.4	1.0e-42
WP_032472503.1|1827297_1827570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071181035.1|1827574_1828228_-	phage N-6-adenine-methyltransferase	NA	Q8HA94	Salmonella_phage	47.6	6.8e-48
WP_071181034.1|1828411_1828618_-	hypothetical protein	NA	A0A1V0E8D3	Vibrio_phage	66.2	2.0e-14
WP_032472504.1|1828614_1829067_-	hypothetical protein	NA	R9TRN6	Vibrio_phage	63.0	2.9e-42
WP_080482707.1|1829361_1830156_+	helix-turn-helix transcriptional regulator	NA	R9TNM0	Vibrio_phage	64.5	1.4e-76
WP_071181033.1|1830182_1830581_+	hypothetical protein	NA	A0A0P0IYG9	Acinetobacter_phage	32.3	4.3e-05
>prophage 5
NZ_CP046736	Vibrio cholerae strain 3528-08 chromosome 1, complete sequence	3101042	1834111	1846437	3101042	integrase	Vibrio_phage(83.33%)	24	1831166:1831181	1855105:1855120
1831166:1831181	attL	CAAAATTTGATGAGGT	NA	NA	NA	NA
WP_071181029.1|1834111_1835221_+	recombination-associated protein RdgC	NA	A0A2I7RNT5	Vibrio_phage	54.3	2.8e-86
WP_158106449.1|1835271_1835862_+	hypothetical protein	NA	K7R9L4	Vibrio_phage	57.9	4.4e-70
WP_158106450.1|1835858_1837376_+	DNA cytosine methyltransferase	NA	A0A1L5C2B8	Pseudoalteromonas_phage	52.2	1.3e-153
WP_158106451.1|1837386_1837860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158106452.1|1837843_1838335_+	hypothetical protein	NA	A0A1V0E8E0	Vibrio_phage	55.0	3.4e-44
WP_158106453.1|1838364_1838574_+	hypothetical protein	NA	A0A1V0E8D5	Vibrio_phage	63.8	2.5e-20
WP_158106454.1|1838582_1838843_+	hypothetical protein	NA	A0A1V0E8E7	Vibrio_phage	53.8	6.3e-13
WP_158106455.1|1838866_1839094_+	hypothetical protein	NA	A0A2H4JB60	uncultured_Caudovirales_phage	58.4	7.6e-15
WP_158106456.1|1839103_1839940_+	HNH endonuclease	NA	A0A1S5SAI9	Streptococcus_phage	39.8	4.2e-34
WP_158106457.1|1839884_1840382_+	hypothetical protein	NA	A0A1V0E8C4	Vibrio_phage	77.5	6.3e-70
WP_032472514.1|1840374_1840626_+	hypothetical protein	NA	A0A1V0E8C3	Vibrio_phage	61.0	1.6e-18
WP_158106458.1|1840646_1841282_+	hypothetical protein	NA	A0A1V0E8E6	Vibrio_phage	64.1	3.6e-78
WP_158106459.1|1841294_1841642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158106460.1|1841638_1842280_+	hypothetical protein	NA	A0A059WLH8	Vibrio_phage	63.1	5.1e-72
WP_032472518.1|1842276_1842504_+	hypothetical protein	NA	A0A1V0E8F5	Vibrio_phage	67.6	2.9e-22
WP_152554674.1|1842607_1842850_+	hypothetical protein	NA	A0A067ZIB4	Vibrio_phage	82.2	3.6e-31
WP_158106461.1|1842855_1843125_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032472521.1|1843124_1843559_+	hypothetical protein	NA	A0A2I7RS33	Vibrio_phage	36.2	6.1e-13
WP_043881223.1|1843954_1844287_+	hypothetical protein	NA	A0A1V0E8F8	Vibrio_phage	66.7	8.2e-26
WP_158106462.1|1844298_1844517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032472524.1|1844521_1844761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032472525.1|1844757_1844991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032472526.1|1844992_1845190_+	AlpA family transcriptional regulator	NA	A0A1V0E8E5	Vibrio_phage	70.8	2.9e-18
WP_001886817.1|1845186_1846437_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	82.9	8.3e-204
1855105:1855120	attR	CAAAATTTGATGAGGT	NA	NA	NA	NA
>prophage 6
NZ_CP046736	Vibrio cholerae strain 3528-08 chromosome 1, complete sequence	3101042	2073432	2130607	3101042		Vibrio_phage(81.63%)	50	NA	NA
WP_158106482.1|2073432_2087109_+	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
WP_000593519.1|2087567_2087942_-	cholera enterotoxin binding subunit CtxB	NA	A0A142I6Y1	Vibrio_phage	100.0	5.9e-65
WP_001888508.1|2087938_2088715_-	cholera enterotoxin catalytic subunit CtxA	NA	A0A023W6A1	Vibrio_virus	100.0	7.8e-152
WP_000979342.1|2090011_2090305_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_080482798.1|2090301_2091582_-	hypothetical protein	NA	A0A142I701	Vibrio_phage	93.4	3.3e-216
WP_000493022.1|2091592_2091841_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001888513.1|2091976_2092357_-	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	4.0e-69
WP_019830347.1|2092334_2093414_-	hypothetical protein	NA	A0A023W5Z8	Vibrio_virus	100.0	2.2e-213
WP_000492997.1|2093545_2093881_+	helix-turn-helix transcriptional regulator	NA	A0A0N9HJE7	Vibrio_phage	100.0	4.7e-53
WP_000593519.1|2094488_2094863_-	cholera enterotoxin binding subunit CtxB	NA	A0A142I6Y1	Vibrio_phage	100.0	5.9e-65
WP_001888508.1|2094859_2095636_-	cholera enterotoxin catalytic subunit CtxA	NA	A0A023W6A1	Vibrio_virus	100.0	7.8e-152
WP_050926705.1|2095735_2096935_-	zonula occludens toxin ZOT	NA	A0A023W604	Vibrio_virus	100.0	5.3e-240
WP_000979342.1|2096931_2097225_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_080482798.1|2097221_2098502_-	hypothetical protein	NA	A0A142I701	Vibrio_phage	93.4	3.3e-216
WP_000493022.1|2098512_2098761_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001888513.1|2098896_2099277_-	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	4.0e-69
WP_019830347.1|2099254_2100334_-	hypothetical protein	NA	A0A023W5Z8	Vibrio_virus	100.0	2.2e-213
WP_000492997.1|2100465_2100801_+	helix-turn-helix transcriptional regulator	NA	A0A0N9HJE7	Vibrio_phage	100.0	4.7e-53
WP_158106483.1|2101314_2102514_-	zonula occludens toxin ZOT	NA	A0A0N9HE81	Vibrio_phage	99.2	1.2e-236
WP_000979342.1|2102510_2102804_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_158106484.1|2102800_2104081_-	hypothetical protein	NA	A0A142I701	Vibrio_phage	93.9	1.8e-217
WP_000493022.1|2104091_2104340_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_032473196.1|2104475_2104796_-	hypothetical protein	NA	Q2PZB5	Vibrio_virus	92.5	1.0e-49
WP_005521561.1|2104845_2106591_-	replication endonuclease	NA	A0A0F6YPA7	Vibrio_phage	98.1	0.0e+00
WP_032469109.1|2107102_2107444_+	helix-turn-helix transcriptional regulator	NA	A0A0F6WBJ9	Vibrio_phage	100.0	9.6e-54
WP_158106485.1|2107879_2109079_-	zonula occludens toxin ZOT	NA	A0A0N9HE81	Vibrio_phage	99.5	2.5e-237
WP_000979342.1|2109075_2109369_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_158106486.1|2109365_2110649_-	hypothetical protein	NA	A0A142I701	Vibrio_phage	98.4	2.3e-217
WP_000493022.1|2110659_2110908_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_032473196.1|2111043_2111364_-	hypothetical protein	NA	Q2PZB5	Vibrio_virus	92.5	1.0e-49
WP_005521561.1|2111413_2113159_-	replication endonuclease	NA	A0A0F6YPA7	Vibrio_phage	98.1	0.0e+00
WP_032469109.1|2113670_2114012_+	helix-turn-helix transcriptional regulator	NA	A0A0F6WBJ9	Vibrio_phage	100.0	9.6e-54
WP_158106485.1|2114447_2115647_-	zonula occludens toxin ZOT	NA	A0A0N9HE81	Vibrio_phage	99.5	2.5e-237
WP_000979342.1|2115643_2115937_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_158106486.1|2115933_2117217_-	hypothetical protein	NA	A0A142I701	Vibrio_phage	98.4	2.3e-217
WP_000493022.1|2117227_2117476_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_005521561.1|2117982_2119728_-	replication endonuclease	NA	A0A0F6YPA7	Vibrio_phage	98.1	0.0e+00
WP_032469109.1|2120239_2120581_+	helix-turn-helix transcriptional regulator	NA	A0A0F6WBJ9	Vibrio_phage	100.0	9.6e-54
WP_000288488.1|2120968_2121331_-	hypothetical protein	NA	Q9MCC3	Vibrio_phage	58.5	3.8e-32
WP_001018569.1|2121509_2121758_+	hypothetical protein	NA	O56843	Vibrio_virus	65.9	1.8e-22
WP_069648025.1|2121768_2121972_+	hypothetical protein	NA	E1CJD3	Vibrio_phage	98.5	3.5e-35
WP_001112192.1|2121961_2123065_+	hypothetical protein	NA	Q64EV8	Vibrio_phage	100.0	1.5e-220
WP_001284206.1|2123069_2123408_+	DUF1293 domain-containing protein	NA	Q858R2	Vibrio_phage	96.4	1.3e-55
WP_001900021.1|2123417_2123648_+	hypothetical protein	NA	G8IRU7	Vibrio_phage	94.7	3.9e-35
WP_000672170.1|2123681_2123891_+	hypothetical protein	NA	G8IRU8	Vibrio_phage	81.2	1.1e-20
WP_158106487.1|2124023_2125418_+	hypothetical protein	NA	Q64EV4	Vibrio_phage	94.6	5.2e-162
WP_001160095.1|2125417_2125762_+	DUF2523 domain-containing protein	NA	Q64EV1	Vibrio_phage	100.0	4.8e-61
WP_158106488.1|2125764_2127132_+	toxin	NA	Q64EV0	Vibrio_phage	95.6	7.8e-256
WP_032474068.1|2127354_2127546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148526835.1|2128468_2130607_+	MarR family transcriptional regulator	NA	Q64EU7	Vibrio_phage	92.5	2.8e-34
>prophage 7
NZ_CP046736	Vibrio cholerae strain 3528-08 chromosome 1, complete sequence	3101042	2979471	2986664	3101042		Anguillid_herpesvirus(16.67%)	9	NA	NA
WP_001162850.1|2979471_2979900_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
WP_001959105.1|2980103_2981393_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.0	6.5e-34
WP_000872174.1|2981612_2981807_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_001124187.1|2981855_2982194_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_019830072.1|2982207_2984058_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	1.5e-105
WP_001105747.1|2984081_2984597_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_000301571.1|2984645_2984969_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_000331703.1|2985029_2985413_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_001886931.1|2985449_2986664_-	IscS subfamily cysteine desulfurase	NA	A0A1X7C038	Faustovirus	41.8	5.0e-28
>prophage 1
NZ_CP046735	Vibrio cholerae strain 3528-08 chromosome 2, complete sequence	1025499	145078	154427	1025499	transposase	Escherichia_phage(33.33%)	6	NA	NA
WP_001887128.1|145078_146473_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.4	1.7e-48
WP_001887130.1|146638_147076_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	34.1	3.2e-17
WP_001887131.1|147137_148934_-	hypothetical protein	NA	A0A1B5FPH1	Escherichia_phage	22.1	8.2e-27
WP_001887132.1|148933_151930_-	sensor histidine kinase	NA	A0A1B5FPD5	Escherichia_phage	32.3	6.0e-75
WP_001915158.1|152014_153196_-	DNA cytosine methyltransferase	NA	M1PSQ0	Streptococcus_phage	31.8	1.2e-42
WP_001217709.1|153383_154427_-	GMP reductase	NA	A0A0N9Q9A5	Chrysochromulina_ericina_virus	53.6	1.8e-98
>prophage 2
NZ_CP046735	Vibrio cholerae strain 3528-08 chromosome 2, complete sequence	1025499	189303	251137	1025499	transposase,plate	Synechococcus_phage(22.22%)	50	NA	NA
WP_158106132.1|189303_190539_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_069217048.1|190734_191676_+	universal stress protein	NA	NA	NA	NA	NA
WP_001889941.1|191747_191948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080286722.1|192094_194770_+	DUF4040 domain-containing protein	NA	NA	NA	NA	NA
WP_000398830.1|194769_195123_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_001887166.1|195119_196616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000639705.1|196612_197089_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_001883000.1|197048_197360_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_001887167.1|197359_197683_+	Na+/H+ antiporter subunit G	NA	NA	NA	NA	NA
WP_032472941.1|197757_199089_-	ferric reductase	NA	NA	NA	NA	NA
WP_000279461.1|199238_199745_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	39.3	9.0e-16
WP_158106133.1|199887_201210_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_158106134.1|201333_205071_-	peptidase M66	NA	NA	NA	NA	NA
WP_001888852.1|205442_206654_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA	NA
WP_158106135.1|206650_208792_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_158106136.1|208971_209979_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_000561009.1|210104_210215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001888847.1|210280_211633_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_071170557.1|211796_213851_+	sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	25.1	1.8e-09
WP_080112194.1|213964_215173_-	Spindolin	NA	S5MR53	Choristoneura_rosaceana_nucleopolyhedrovirus	34.0	8.5e-28
WP_000720501.1|215580_215928_+	DUF3316 domain-containing protein	NA	NA	NA	NA	NA
WP_019829515.1|216353_217712_+	glycerol-3-phosphate transporter	NA	NA	NA	NA	NA
WP_000917228.1|217865_218933_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
WP_001887744.1|218967_219648_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_001887743.1|219787_220519_-	nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_000365210.1|220515_221250_-	nicotinamide riboside transporter PnuC	NA	A0A1L2CV72	Pectobacterium_phage	22.1	5.0e-07
WP_000224436.1|221375_222380_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_001887742.1|222390_223311_-	ribokinase	NA	E3SL45	Synechococcus_phage	38.6	3.4e-05
WP_158106137.1|223449_224334_-	ribose ABC transporter substrate-binding protein RbsB	NA	C6ZCU4	Enterobacteria_phage	23.0	9.6e-05
WP_001887740.1|224388_225390_-	ribose ABC transporter permease	NA	NA	NA	NA	NA
WP_142615375.1|225386_226889_-	ribose ABC transporter ATP-binding protein RbsA	NA	A0A2H4PQG7	Staphylococcus_phage	26.7	1.4e-16
WP_000749918.1|226915_227335_-	D-ribose pyranase	NA	NA	NA	NA	NA
WP_158106138.1|227618_227879_+	DUF3012 domain-containing protein	NA	NA	NA	NA	NA
WP_154025657.1|227926_228892_-	DUF1911 domain-containing protein	NA	NA	NA	NA	NA
WP_000264537.1|228912_230229_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158106139.1|230231_232430_-	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	24.6	1.3e-29
WP_001882973.1|232389_232632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158106140.1|232682_233948_-	type VI secretion protein	NA	NA	NA	NA	NA
WP_001882971.1|233995_237541_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_032469836.1|237556_238966_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_001882968.1|238975_239659_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA	NA
WP_000084793.1|239628_241221_-	AAA domain-containing protein	NA	NA	NA	NA	NA
WP_158106141.1|241223_243833_-	type VI secretion system ATPase TssH	NA	H6X3M6	Enterobacteria_phage	29.9	2.9e-89
WP_000083407.1|243858_244632_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_000458007.1|244634_245969_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_001045311.1|245975_246452_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_001089708.1|246454_247942_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
WP_158106142.1|247944_248961_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_002043238.1|248924_250694_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000221000.1|250699_251137_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
