assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009762365.1_ASM976236v1	NZ_CP044291	Escherichia coli strain P43A chromosome, complete genome	1	75475-75566	1	CRISPRCasFinder	no		RT,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA|70aa|up_9|NZ_CP044291.1_64550_64760_-,NA	NA|70aa|up_9|NZ_CP044291.1_64550_64760_-	NA	NA|1321aa|up_8|NZ_CP044291.1_64814_68777_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP044291.1_68816_69455_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP044291.1_69742_70834_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP044291.1_70833_71526_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP044291.1_71537_71924_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP044291.1_71931_72732_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP044291.1_72741_73332_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP044291.1_73342_73837_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP044291.1_73857_75186_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP044291.1_75989_76586_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP044291.1_76606_76834_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP044291.1_76871_78113_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP044291.1_79917_80838_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP044291.1_80837_81143_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP044291.1_81294_81894_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP044291.1_81890_84437_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP044291.1_84436_85609_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP044291.1_85738_86431_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP044291.1_86403_87432_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_009762365.1_ASM976236v1	NZ_CP044291	Escherichia coli strain P43A chromosome, complete genome	2	371352-371477	2	CRISPRCasFinder	no		RT,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	TTCGATGCGATTTGTAGGTCGGATAAGATGCGC	33	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA	NA|330aa|up_9|NZ_CP044291.1_359263_360253_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP044291.1_360649_361558_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP044291.1_361749_363771_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP044291.1_364349_365027_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP044291.1_365019_365775_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP044291.1_365761_366916_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP044291.1_366912_367953_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP044291.1_368039_369329_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP044291.1_369387_369864_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP044291.1_370015_371299_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|478aa|down_0|NZ_CP044291.1_373976_375410_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_1|NZ_CP044291.1_375485_376538_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_2|NZ_CP044291.1_376721_377675_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_3|NZ_CP044291.1_377715_378711_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_4|NZ_CP044291.1_378865_379684_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_5|NZ_CP044291.1_379684_380743_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_6|NZ_CP044291.1_380745_381435_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_7|NZ_CP044291.1_381434_382208_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_8|NZ_CP044291.1_382373_382523_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|263aa|down_9|NZ_CP044291.1_382651_383440_+	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional
GCF_009762365.1_ASM976236v1	NZ_CP044291	Escherichia coli strain P43A chromosome, complete genome	3	614849-614945	3	CRISPRCasFinder	no		RT,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA	NA|231aa|up_9|NZ_CP044291.1_606644_607337_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP044291.1_607556_608099_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP044291.1_608569_609436_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP044291.1_609437_609650_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP044291.1_609757_610279_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP044291.1_610314_611700_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP044291.1_611873_612368_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP044291.1_612370_613093_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP044291.1_613210_613720_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP044291.1_613716_614784_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP044291.1_614978_615872_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP044291.1_615868_616684_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP044291.1_616694_617954_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP044291.1_617963_619631_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP044291.1_619947_620997_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP044291.1_621018_622254_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP044291.1_622264_623050_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP044291.1_623277_624423_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP044291.1_624444_625746_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP044291.1_625802_627164_-	PRK08044, PRK08044, allantoinase AllB
GCF_009762365.1_ASM976236v1	NZ_CP044291	Escherichia coli strain P43A chromosome, complete genome	4	1092213-1092348	1	PILER-CR	no		RT,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	RT,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA	NA|126aa|up_9|NZ_CP044291.1_1082921_1083299_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP044291.1_1083305_1084148_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP044291.1_1084225_1084705_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP044291.1_1084896_1086759_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP044291.1_1086751_1087282_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP044291.1_1087389_1088721_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP044291.1_1088777_1089065_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP044291.1_1089061_1090348_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP044291.1_1090398_1091340_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP044291.1_1091354_1092125_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP044291.1_1092597_1094112_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP044291.1_1094142_1095285_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP044291.1_1095413_1096631_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP044291.1_1096704_1098258_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP044291.1_1098366_1099152_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP044291.1_1099157_1099748_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP044291.1_1099866_1100262_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP044291.1_1100522_1103744_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP044291.1_1103761_1104910_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP044291.1_1105365_1106187_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_009762365.1_ASM976236v1	NZ_CP044291	Escherichia coli strain P43A chromosome, complete genome	5	1287847-1287996	4	CRISPRCasFinder	no		RT,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA|264aa|down_5|NZ_CP044291.1_1295928_1296720_-	NA|319aa|up_9|NZ_CP044291.1_1273677_1274634_+	PRK09777, fecD, Fe(3+) dicitrate ABC transporter permease subunit FecD	NA|256aa|up_8|NZ_CP044291.1_1274634_1275402_+	PRK11231, fecE, Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	NA|86aa|up_7|NZ_CP044291.1_1275959_1276217_-	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only]	NA|117aa|up_6|NZ_CP044291.1_1278326_1278677_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|275aa|up_5|NZ_CP044291.1_1279399_1280224_-	pfam18863, AbiJ_NTD4, AbiJ N-terminal domain 4	NA|340aa|up_4|NZ_CP044291.1_1281037_1282057_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|501aa|up_3|NZ_CP044291.1_1282186_1283689_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP044291.1_1283849_1284932_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP044291.1_1284931_1286032_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP044291.1_1286298_1287810_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP044291.1_1288163_1288607_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP044291.1_1288606_1291462_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|168aa|down_2|NZ_CP044291.1_1292861_1293365_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_3|NZ_CP044291.1_1293410_1293827_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_4|NZ_CP044291.1_1293988_1294993_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|264aa|down_5|NZ_CP044291.1_1295928_1296720_-	NA	NA|151aa|down_6|NZ_CP044291.1_1296842_1297295_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_7|NZ_CP044291.1_1297439_1298033_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_8|NZ_CP044291.1_1298103_1298817_+	PRK12742, PRK12742, SDR family oxidoreductase	NA|132aa|down_9|NZ_CP044291.1_1298947_1299343_+	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
GCF_009762365.1_ASM976236v1	NZ_CP044291	Escherichia coli strain P43A chromosome, complete genome	6	2942004-2942337	2,5,1	PILER-CR,CRISPRCasFinder,CRT	no		RT,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,5,5	5	Orphan	RT,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA	NA|919aa|up_9|NZ_CP044291.1_2928588_2931345_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP044291.1_2931401_2932703_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP044291.1_2932750_2934985_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP044291.1_2935062_2935311_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP044291.1_2935310_2935646_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP044291.1_2935716_2936508_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP044291.1_2936735_2938373_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP044291.1_2938460_2939759_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP044291.1_2939818_2940691_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP044291.1_2940991_2941663_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP044291.1_2942933_2944412_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP044291.1_2944438_2945716_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP044291.1_2946034_2946820_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP044291.1_2946889_2948344_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP044291.1_2948437_2949775_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP044291.1_2949752_2950532_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP044291.1_2950528_2951389_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP044291.1_2951536_2952112_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP044291.1_2952128_2952389_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP044291.1_2952379_2953651_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_009762365.1_ASM976236v1	NZ_CP044291	Escherichia coli strain P43A chromosome, complete genome	7	2969340-2969856	3,6,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	RT,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	TypeI-E	RT,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA	NA|245aa|up_9|NZ_CP044291.1_2957995_2958730_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP044291.1_2958994_2959147_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP044291.1_2960681_2963381_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP044291.1_2963478_2965041_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|180aa|up_5|NZ_CP044291.1_2965037_2965577_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP044291.1_2965588_2966644_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP044291.1_2966654_2967401_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP044291.1_2967382_2968033_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP044291.1_2968029_2968950_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP044291.1_2968949_2969243_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP044291.1_2969938_2970976_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP044291.1_2971227_2972136_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP044291.1_2972137_2973565_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP044291.1_2973564_2974170_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP044291.1_2974219_2974543_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP044291.1_2974736_2975048_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP044291.1_2975066_2975777_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP044291.1_2975776_2976256_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP044291.1_2976252_2977302_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP044291.1_2977282_2978044_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_009762365.1_ASM976236v1	NZ_CP044291	Escherichia coli strain P43A chromosome, complete genome	8	3174063-3174180	7	CRISPRCasFinder	no		RT,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	CGGATAAGGCGTTCACGCCGCATCCGACA	29	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA	NA|271aa|up_9|NZ_CP044291.1_3164452_3165265_-	cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs	NA|107aa|up_8|NZ_CP044291.1_3165261_3165582_-	PRK09965, PRK09965, 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional	NA|173aa|up_7|NZ_CP044291.1_3165581_3166100_-	PRK10069, PRK10069, 3-phenylpropionate/cinnamic acid dioxygenase subunit beta	NA|454aa|up_6|NZ_CP044291.1_3166096_3167458_-	cd08881, RHO_alpha_C_NDO-like, C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases	NA|297aa|up_5|NZ_CP044291.1_3167593_3168484_+	PRK09906, PRK09906, DNA-binding transcriptional regulator HcaR; Provisional	NA|380aa|up_4|NZ_CP044291.1_3168643_3169783_+	PRK11128, PRK11128, 3-phenylpropionate MFS transporter	NA|427aa|up_3|NZ_CP044291.1_3169774_3171055_-	PRK11564, PRK11564, stationary phase inducible protein CsiE; Provisional	NA|285aa|up_2|NZ_CP044291.1_3171245_3172100_-	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|268aa|up_1|NZ_CP044291.1_3172244_3173048_-	PRK10757, PRK10757, inositol-1-monophosphatase	NA|247aa|up_0|NZ_CP044291.1_3173166_3173907_+	PRK15114, PRK15114, tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional	NA|163aa|down_0|NZ_CP044291.1_3174356_3174845_+	PRK10857, PRK10857, Fe-S cluster assembly transcriptional regulator IscR	NA|405aa|down_1|NZ_CP044291.1_3175085_3176300_+	PRK14012, PRK14012, IscS subfamily cysteine desulfurase	NA|129aa|down_2|NZ_CP044291.1_3176327_3176714_+	PRK11325, PRK11325, scaffold protein; Provisional	NA|108aa|down_3|NZ_CP044291.1_3176730_3177054_+	PRK09502, iscA, iron-sulfur cluster assembly protein IscA	NA|172aa|down_4|NZ_CP044291.1_3177149_3177665_+	PRK05014, hscB, co-chaperone HscB; Provisional	NA|617aa|down_5|NZ_CP044291.1_3177681_3179532_+	PRK05183, hscA, chaperone protein HscA; Provisional	NA|112aa|down_6|NZ_CP044291.1_3179533_3179869_+	TIGR02007, 2Fe-2S_ferredoxin, ferredoxin, 2Fe-2S type, ISC system	NA|67aa|down_7|NZ_CP044291.1_3179880_3180081_+	PRK10721, PRK10721, hypothetical protein; Provisional	NA|428aa|down_8|NZ_CP044291.1_3180258_3181542_+	PRK05015, PRK05015, aminopeptidase B; Provisional	NA|259aa|down_9|NZ_CP044291.1_3181683_3182460_+	PRK11611, PRK11611, enhanced serine sensitivity protein SseB; Provisional
GCF_009762365.1_ASM976236v1	NZ_CP044291	Escherichia coli strain P43A chromosome, complete genome	9	3469792-3469909	8	CRISPRCasFinder	no		RT,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA	NA|62aa|up_9|NZ_CP044291.1_3459077_3459263_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP044291.1_3459275_3460175_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP044291.1_3460367_3461558_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP044291.1_3461554_3462814_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP044291.1_3462803_3464432_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP044291.1_3464704_3466063_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP044291.1_3466067_3467144_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP044291.1_3467606_3468257_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP044291.1_3468310_3468565_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP044291.1_3468564_3469695_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP044291.1_3469928_3472214_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP044291.1_3472919_3476672_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP044291.1_3476799_3477522_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP044291.1_3477668_3480296_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP044291.1_3480444_3482133_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP044291.1_3482129_3482753_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP044291.1_3482896_3487291_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP044291.1_3487291_3488941_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP044291.1_3488945_3489722_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP044291.1_3489795_3490980_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_009762365.1_ASM976236v1	NZ_CP044291	Escherichia coli strain P43A chromosome, complete genome	10	4129606-4129729	9	CRISPRCasFinder	no	DEDDh	RT,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA|30aa|down_7|NZ_CP044291.1_4138625_4138715_+	NA|471aa|up_9|NZ_CP044291.1_4119062_4120475_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP044291.1_4121031_4121241_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP044291.1_4121693_4122320_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP044291.1_4122340_4124443_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP044291.1_4124446_4125094_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP044291.1_4125157_4125826_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP044291.1_4125822_4126608_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP044291.1_4126611_4127424_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP044291.1_4127435_4129040_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP044291.1_4129165_4129471_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP044291.1_4130043_4131300_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP044291.1_4131340_4132714_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP044291.1_4132928_4133570_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP044291.1_4133609_4134758_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP044291.1_4135048_4136260_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP044291.1_4136372_4137305_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP044291.1_4137301_4138327_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP044291.1_4138625_4138715_+	NA	NA|390aa|down_8|NZ_CP044291.1_4138880_4140050_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP044291.1_4140284_4140866_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_009762365.1_ASM976236v1	NZ_CP044292	Escherichia coli strain P43A plasmid pP43A-1, complete sequence	1	44207-44332	1	CRISPRCasFinder	no			Orphan	GGTACGCACTGAAAGGTGGATAGGTACGCA	30	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA|386aa|up_8|NZ_CP044292.1_38692_39850_-,NA|182aa|up_7|NZ_CP044292.1_39852_40398_-,NA|91aa|up_6|NZ_CP044292.1_40724_40997_-,NA|110aa|up_5|NZ_CP044292.1_41445_41775_-,NA|72aa|up_4|NZ_CP044292.1_41867_42083_-,NA|82aa|up_3|NZ_CP044292.1_42072_42318_-,NA|108aa|up_2|NZ_CP044292.1_42362_42686_-,NA|149aa|down_1|NZ_CP044292.1_45482_45929_+	NA|164aa|up_9|NZ_CP044292.1_37840_38332_-	cd09894, NGN_SP_AnfA1, N-Utilization Substance G (NusG) N-terminal domain in the NusG Specialized Paralog (SP), AnFA1	NA|386aa|up_8|NZ_CP044292.1_38692_39850_-	NA	NA|182aa|up_7|NZ_CP044292.1_39852_40398_-	NA	NA|91aa|up_6|NZ_CP044292.1_40724_40997_-	NA	NA|110aa|up_5|NZ_CP044292.1_41445_41775_-	NA	NA|72aa|up_4|NZ_CP044292.1_41867_42083_-	NA	NA|82aa|up_3|NZ_CP044292.1_42072_42318_-	NA	NA|108aa|up_2|NZ_CP044292.1_42362_42686_-	NA	NA|94aa|up_1|NZ_CP044292.1_42831_43113_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|84aa|up_0|NZ_CP044292.1_43102_43354_-	PRK02854, PRK02854, primosomal protein DnaT	NA|279aa|down_0|NZ_CP044292.1_44606_45443_+	pfam01051, Rep_3, Initiator Replication protein	NA|149aa|down_1|NZ_CP044292.1_45482_45929_+	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
