assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009756515.1_ASM975651v1	NZ_CP037874	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS014854 chromosome, complete genome	1	3010954-3012429	1,1,1,2,2	CRISPRCasFinder,CRT,PILER-CR,CRT,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACA,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,27,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E	22,23,24,23,22	24	TypeI-E	DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	NA|254aa|up_9|NZ_CP037874.1_3002820_3003582_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP037874.1_3003562_3004612_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP037874.1_3004608_3005088_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP037874.1_3005087_3005798_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP037874.1_3005816_3006128_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|NZ_CP037874.1_3006318_3006675_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP037874.1_3006692_3007298_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP037874.1_3007284_3008724_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP037874.1_3008733_3009642_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP037874.1_3009892_3010939_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP037874.1_3012525_3012819_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP037874.1_3012818_3013739_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP037874.1_3013735_3014386_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP037874.1_3014367_3015114_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP037874.1_3015124_3016183_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|NZ_CP037874.1_3016196_3016757_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|NZ_CP037874.1_3016753_3018310_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|NZ_CP037874.1_3018321_3020985_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_CP037874.1_3021429_3022383_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_CP037874.1_3022470_3023205_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_009756515.1_ASM975651v1	NZ_CP037874	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS014854 chromosome, complete genome	2	3028561-3030176	3,3,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	26,26,25	26	TypeI-E	DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	cas7|353aa|up_9|NZ_CP037874.1_3015124_3016183_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|up_8|NZ_CP037874.1_3016196_3016757_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|up_7|NZ_CP037874.1_3016753_3018310_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_6|NZ_CP037874.1_3018321_3020985_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NZ_CP037874.1_3021429_3022383_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP037874.1_3022470_3023205_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP037874.1_3023280_3024993_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP037874.1_3024992_3026792_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP037874.1_3027215_3027578_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP037874.1_3027665_3028463_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP037874.1_3030472_3031144_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP037874.1_3031279_3032578_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP037874.1_3032660_3034298_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP037874.1_3034525_3035326_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|99aa|down_4|NZ_CP037874.1_3036093_3036390_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|119aa|down_5|NZ_CP037874.1_3036355_3036712_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|745aa|down_6|NZ_CP037874.1_3036795_3039030_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_7|NZ_CP037874.1_3039081_3040377_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_8|NZ_CP037874.1_3040434_3043191_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_9|NZ_CP037874.1_3043234_3044377_-	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]
GCF_009756515.1_ASM975651v1	NZ_CP037874	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS014854 chromosome, complete genome	3	3590783-3591182	4	CRT	no		DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	ACCCCGCCCGACGATNGCGGCG	22	1	1	3590805-3590836	NZ_CP037874.1_3590778-3590809	NA	6	6	Orphan	DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	NA|406aa|up_9|NZ_CP037874.1_3579747_3580965_-	PRK05093, argD, acetylornithine/succinyldiaminopimelate transaminase	NA|188aa|up_8|NZ_CP037874.1_3581050_3581614_-	PRK08007, PRK08007, aminodeoxychorismate synthase component 2	NA|201aa|up_7|NZ_CP037874.1_3581645_3582248_-	PRK10347, PRK10347, putative adenosine monophosphate-protein transferase Fic	NA|56aa|up_6|NZ_CP037874.1_3582237_3582405_-	PRK10204, PRK10204, hypothetical protein; Provisional	NA|191aa|up_5|NZ_CP037874.1_3582513_3583086_-	PRK10903, PRK10903, peptidylprolyl isomerase A	NA|394aa|up_4|NZ_CP037874.1_3583362_3584544_+	PRK03699, PRK03699, putative transporter; Provisional	NA|848aa|up_3|NZ_CP037874.1_3584806_3587350_+	PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional	NA|109aa|up_2|NZ_CP037874.1_3587346_3587673_+	PRK09511, nirD, nitrite reductase small subunit NirD	NA|270aa|up_1|NZ_CP037874.1_3587938_3588748_+	PRK11562, PRK11562, nitrite transporter NirC; Provisional	NA|458aa|up_0|NZ_CP037874.1_3588759_3590133_+	PRK10637, cysG, siroheme synthase CysG	NA|153aa|down_0|NZ_CP037874.1_3596481_3596940_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|57aa|down_1|NZ_CP037874.1_3597253_3597424_+	pfam13978, DUF4223, Protein of unknown function (DUF4223)	NA|335aa|down_2|NZ_CP037874.1_3597568_3598573_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|253aa|down_3|NZ_CP037874.1_3598565_3599324_-	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|226aa|down_4|NZ_CP037874.1_3599316_3599994_-	PRK08883, PRK08883, ribulose-phosphate 3-epimerase; Provisional	NA|279aa|down_5|NZ_CP037874.1_3600011_3600848_-	PRK10904, PRK10904, adenine-specific DNA-methyltransferase	NA|426aa|down_6|NZ_CP037874.1_3601028_3602306_-	PRK10905, PRK10905, cell division protein DamX; Validated	NA|363aa|down_7|NZ_CP037874.1_3602403_3603492_-	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed	NA|174aa|down_8|NZ_CP037874.1_3603548_3604070_-	PRK05057, aroK, shikimate kinase AroK	NA|413aa|down_9|NZ_CP037874.1_3604534_3605773_-	PRK10560, hofQ, outer membrane porin HofQ; Provisional
