assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009745915.1_ASM974591v1	NZ_CP043179	Pseudomonas protegens strain SN15-2 chromosome, complete genome	1	1684071-1684142	1	CRISPRCasFinder	no		cas3,csa3,DinG,DEDDh,WYL,PD-DExK	Orphan	TTCGCTGGCAAGCCAGCTCCTGC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,WYL,PD-DExK	NA|156aa|up_5|NZ_CP043179.1_1680058_1680526_+,NA	NA|213aa|up_9|NZ_CP043179.1_1675202_1675841_-	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism]	NA|308aa|up_8|NZ_CP043179.1_1675966_1676890_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|177aa|up_7|NZ_CP043179.1_1677000_1677531_+	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]	NA|692aa|up_6|NZ_CP043179.1_1677597_1679673_-	COG2982, AsmA, Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]	NA|156aa|up_5|NZ_CP043179.1_1680058_1680526_+	NA	NA|211aa|up_4|NZ_CP043179.1_1680694_1681327_+	PRK11202, PRK11202, HTH-type transcriptional repressor FabR	NA|167aa|up_3|NZ_CP043179.1_1681607_1682108_+	PRK13261, ureE, urease accessory protein UreE; Provisional	NA|225aa|up_2|NZ_CP043179.1_1682104_1682779_+	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]	NA|205aa|up_1|NZ_CP043179.1_1682788_1683403_+	cd05540, UreG, urease accessory protein UreG	NA|191aa|up_0|NZ_CP043179.1_1683441_1684014_+	pfam04955, HupE_UreJ, HupE / UreJ protein	NA|380aa|down_0|NZ_CP043179.1_1684231_1685371_+	COG2942, COG2942, N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]	NA|302aa|down_1|NZ_CP043179.1_1685444_1686350_-	COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|256aa|down_2|NZ_CP043179.1_1686597_1687365_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|239aa|down_3|NZ_CP043179.1_1688237_1688954_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|291aa|down_4|NZ_CP043179.1_1688950_1689823_-	PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional	NA|432aa|down_5|NZ_CP043179.1_1689819_1691115_-	PRK11301, livM, leucine/isoleucine/valine transporter permease subunit; Provisional	NA|305aa|down_6|NZ_CP043179.1_1691117_1692032_-	PRK10740, PRK10740, high-affinity branched-chain amino acid ABC transporter permease LivH	NA|379aa|down_7|NZ_CP043179.1_1692193_1693330_-	cd06342, PBP1_ABC_LIVBP-like, type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine)	NA|428aa|down_8|NZ_CP043179.1_1693694_1694978_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|497aa|down_9|NZ_CP043179.1_1695091_1696582_-	cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B
GCF_009745915.1_ASM974591v1	NZ_CP043179	Pseudomonas protegens strain SN15-2 chromosome, complete genome	2	4077847-4077972	2	CRISPRCasFinder	no		cas3,csa3,DinG,DEDDh,WYL,PD-DExK	Orphan	GTTTTCCACTGAGTTCGGAATCCGAACT	28	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,WYL,PD-DExK	NA|176aa|up_7|NZ_CP043179.1_4066709_4067237_-,NA|66aa|up_3|NZ_CP043179.1_4073248_4073446_-,NA|77aa|down_4|NZ_CP043179.1_4082376_4082607_-,NA|173aa|down_5|NZ_CP043179.1_4082599_4083118_-,NA|91aa|down_7|NZ_CP043179.1_4084638_4084911_-,NA|128aa|down_9|NZ_CP043179.1_4086554_4086938_-	NA|614aa|up_9|NZ_CP043179.1_4063539_4065381_-	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family	NA|382aa|up_8|NZ_CP043179.1_4065377_4066523_-	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family	NA|176aa|up_7|NZ_CP043179.1_4066709_4067237_-	NA	NA|656aa|up_6|NZ_CP043179.1_4067303_4069271_-	cd18793, SF2_C_SNF, C-terminal helicase domain of the SNF family helicases	NA|504aa|up_5|NZ_CP043179.1_4069267_4070779_-	pfam14284, PcfJ, PcfJ-like protein	NA|639aa|up_4|NZ_CP043179.1_4071237_4073154_-	COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and repair]	NA|66aa|up_3|NZ_CP043179.1_4073248_4073446_-	NA	NA|169aa|up_2|NZ_CP043179.1_4074124_4074631_-	PRK08182, PRK08182, single-stranded DNA-binding protein; Provisional	NA|182aa|up_1|NZ_CP043179.1_4074645_4075191_-	pfam11358, DUF3158, Protein of unknown function (DUF3158)	NA|244aa|up_0|NZ_CP043179.1_4075187_4075919_-	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family	NA|209aa|down_0|NZ_CP043179.1_4078688_4079315_-	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|558aa|down_1|NZ_CP043179.1_4079356_4081030_-	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein	NA|109aa|down_2|NZ_CP043179.1_4081031_4081358_-	pfam03869, Arc, Arc-like DNA binding domain	NA|334aa|down_3|NZ_CP043179.1_4081375_4082377_-	PRK00378, PRK00378, nucleoid-associated protein NdpA; Validated	NA|77aa|down_4|NZ_CP043179.1_4082376_4082607_-	NA	NA|173aa|down_5|NZ_CP043179.1_4082599_4083118_-	NA	NA|450aa|down_6|NZ_CP043179.1_4083292_4084642_-	TIGR00665, DnaB, replicative DNA helicase	NA|91aa|down_7|NZ_CP043179.1_4084638_4084911_-	NA	NA|230aa|down_8|NZ_CP043179.1_4085306_4085996_-	pfam10979, DUF2786, Protein of unknown function (DUF2786)	NA|128aa|down_9|NZ_CP043179.1_4086554_4086938_-	NA
GCF_009745915.1_ASM974591v1	NZ_CP043179	Pseudomonas protegens strain SN15-2 chromosome, complete genome	3	6925779-6925896	3	CRISPRCasFinder	no		cas3,csa3,DinG,DEDDh,WYL,PD-DExK	Orphan	GGGCCCTTTCGCTGGCAAGCCAGCTCCTACGGT	33	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,WYL,PD-DExK	NA|199aa|up_9|NZ_CP043179.1_6916389_6916986_-,NA|231aa|up_6|NZ_CP043179.1_6919016_6919709_+,NA|76aa|down_8|NZ_CP043179.1_6933806_6934034_+	NA|199aa|up_9|NZ_CP043179.1_6916389_6916986_-	NA	NA|301aa|up_8|NZ_CP043179.1_6916982_6917885_-	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|235aa|up_7|NZ_CP043179.1_6918102_6918807_-	PRK11752, PRK11752, putative S-transferase; Provisional	NA|231aa|up_6|NZ_CP043179.1_6919016_6919709_+	NA	NA|430aa|up_5|NZ_CP043179.1_6919709_6920999_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|249aa|up_4|NZ_CP043179.1_6920995_6921742_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|219aa|up_3|NZ_CP043179.1_6921738_6922395_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|257aa|up_2|NZ_CP043179.1_6922455_6923226_-	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold	NA|259aa|up_1|NZ_CP043179.1_6923397_6924174_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|352aa|up_0|NZ_CP043179.1_6924715_6925771_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|365aa|down_0|NZ_CP043179.1_6925939_6927034_-	PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional	NA|345aa|down_1|NZ_CP043179.1_6927033_6928068_-	PRK00943, PRK00943, selenide, water dikinase SelD	NA|122aa|down_2|NZ_CP043179.1_6928111_6928477_-	pfam14534, DUF4440, Domain of unknown function (DUF4440)	NA|319aa|down_3|NZ_CP043179.1_6928775_6929732_+	PRK15106, PRK15106, nucleoside-specific channel-forming protein Tsx; Provisional	NA|343aa|down_4|NZ_CP043179.1_6929819_6930848_+	pfam06516, NUP, Purine nucleoside permease (NUP)	NA|319aa|down_5|NZ_CP043179.1_6931407_6932364_-	COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]	NA|58aa|down_6|NZ_CP043179.1_6932405_6932579_-	pfam07235, DUF1427, Protein of unknown function (DUF1427)	NA|258aa|down_7|NZ_CP043179.1_6932808_6933582_-	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|76aa|down_8|NZ_CP043179.1_6933806_6934034_+	NA	NA|57aa|down_9|NZ_CP043179.1_6934083_6934254_-	pfam02069, Metallothio_Pro, Prokaryotic metallothionein
GCF_009745915.1_ASM974591v1	NZ_CP043179	Pseudomonas protegens strain SN15-2 chromosome, complete genome	4	7001680-7001813	4	CRISPRCasFinder	no		cas3,csa3,DinG,DEDDh,WYL,PD-DExK	Orphan	CCTGTAGGAGCCGGCTTGCCGGCGAAGGCGATCTTGCGGGCCT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,WYL,PD-DExK	NA,NA	NA|220aa|up_9|NZ_CP043179.1_6992092_6992752_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|79aa|up_8|NZ_CP043179.1_6993924_6994161_-	TIGR02606, Antitoxin_ParD, putative addiction module antidote protein, CC2985 family	NA|213aa|up_7|NZ_CP043179.1_6994203_6994842_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|424aa|up_6|NZ_CP043179.1_6994841_6996113_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|395aa|up_5|NZ_CP043179.1_6996429_6997614_+	TIGR03863, PQQ_ABC_bind, ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system	NA|325aa|up_4|NZ_CP043179.1_6997644_6998619_+	TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated beta-propeller protein	NA|253aa|up_3|NZ_CP043179.1_6998615_6999374_+	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system	NA|264aa|up_2|NZ_CP043179.1_6999370_7000162_+	TIGR03861, ABC_efflux_transporter_permease_protein, alcohol ABC transporter, permease protein	NA|181aa|up_1|NZ_CP043179.1_7000394_7000937_+	TIGR03865, PQQ_CXXCW, PQQ-dependent catabolism-associated CXXCW motif protein	NA|222aa|up_0|NZ_CP043179.1_7000991_7001657_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|884aa|down_0|NZ_CP043179.1_7001846_7004498_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|388aa|down_1|NZ_CP043179.1_7004427_7005591_-	COG3287, COG3287, Uncharacterized conserved protein [Function unknown]	NA|395aa|down_2|NZ_CP043179.1_7006121_7007306_-	pfam13609, Porin_4, Gram-negative porin	NA|349aa|down_3|NZ_CP043179.1_7007514_7008561_-	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase	NA|292aa|down_4|NZ_CP043179.1_7008692_7009568_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|251aa|down_5|NZ_CP043179.1_7009584_7010337_+	cd13702, PBP2_mlr5654_like, Substrate binding domain of ABC-type histidine/lysine/arginine/ornithine transporter-like; the type 2 periplasmic-binding protein fold	NA|240aa|down_6|NZ_CP043179.1_7010423_7011143_+	COG4215, ArtQ, ABC-type arginine transport system, permease component [Amino acid transport and metabolism]	NA|237aa|down_7|NZ_CP043179.1_7011139_7011850_+	COG4160, ArtM, ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism]	NA|414aa|down_8|NZ_CP043179.1_7011896_7013138_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|267aa|down_9|NZ_CP043179.1_7013154_7013955_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
