assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009741445.1_ASM974144v1	NZ_CP046507	Mycobacterium avium subsp. avium strain DSM 44156 chromosome, complete genome	1	1819470-1819568	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,cas4,RT,DinG	Orphan	CCGCTCGGGGTCGGGCCGCAACCG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,cas4,RT,DinG	NA,NA	NA|254aa|up_9|NZ_CP046507.1_1809111_1809873_+	PRK06500, PRK06500, SDR family oxidoreductase	NA|186aa|up_8|NZ_CP046507.1_1809920_1810478_-	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|506aa|up_7|NZ_CP046507.1_1811016_1812534_+	pfam00668, Condensation, Condensation domain	NA|107aa|up_6|NZ_CP046507.1_1812586_1812907_-	pfam00226, DnaJ, DnaJ domain	NA|140aa|up_5|NZ_CP046507.1_1813219_1813639_-	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|127aa|up_4|NZ_CP046507.1_1813751_1814132_+	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|148aa|up_3|NZ_CP046507.1_1814192_1814636_-	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|410aa|up_2|NZ_CP046507.1_1814800_1816030_+	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|392aa|up_1|NZ_CP046507.1_1816026_1817202_-	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|492aa|up_0|NZ_CP046507.1_1817198_1818674_-	PRK06524, PRK06524, biotin carboxylase-like protein; Validated	NA|104aa|down_0|NZ_CP046507.1_1819713_1820025_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|134aa|down_1|NZ_CP046507.1_1820175_1820577_-	cd08355, TioX_like, Micromonospora sp	NA|281aa|down_2|NZ_CP046507.1_1820530_1821373_-	pfam12833, HTH_18, Helix-turn-helix domain	NA|146aa|down_3|NZ_CP046507.1_1821596_1822034_+	pfam00553, CBM_2, Cellulose binding domain	NA|237aa|down_4|NZ_CP046507.1_1822215_1822926_+	PRK07577, PRK07577, SDR family oxidoreductase	NA|218aa|down_5|NZ_CP046507.1_1822971_1823625_+	TIGR03401, Uncharacterized_protein_YFL061W/YNL335W, HD domain protein, cyanamide hydratase family	NA|607aa|down_6|NZ_CP046507.1_1823648_1825469_-	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	NA|295aa|down_7|NZ_CP046507.1_1825613_1826498_+	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|196aa|down_8|NZ_CP046507.1_1826518_1827106_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|273aa|down_9|NZ_CP046507.1_1827219_1828038_+	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]
GCF_009741445.1_ASM974144v1	NZ_CP046507	Mycobacterium avium subsp. avium strain DSM 44156 chromosome, complete genome	2	3053727-3053810	2	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,cas4,RT,DinG	Orphan	CGGCCGGCGCCCGAGTTGTCGGCCG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,cas4,RT,DinG	NA|291aa|up_6|NZ_CP046507.1_3047041_3047914_-,NA	NA|190aa|up_9|NZ_CP046507.1_3044177_3044747_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|124aa|up_8|NZ_CP046507.1_3044806_3045178_+	cd00781, ketosteroid_isomerase, ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon	NA|582aa|up_7|NZ_CP046507.1_3045271_3047017_+	pfam02254, TrkA_N, TrkA-N domain	NA|291aa|up_6|NZ_CP046507.1_3047041_3047914_-	NA	NA|293aa|up_5|NZ_CP046507.1_3047975_3048854_-	pfam00296, Bac_luciferase, Luciferase-like monooxygenase	NA|138aa|up_4|NZ_CP046507.1_3048920_3049334_+	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|132aa|up_3|NZ_CP046507.1_3049385_3049781_+	cd08351, ChaP_like, ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha), and similar proteins	NA|162aa|up_2|NZ_CP046507.1_3049777_3050263_-	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein	NA|617aa|up_1|NZ_CP046507.1_3050321_3052172_-	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional	NA|310aa|up_0|NZ_CP046507.1_3052171_3053101_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|164aa|down_0|NZ_CP046507.1_3053874_3054366_-	cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|325aa|down_1|NZ_CP046507.1_3054514_3055489_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|292aa|down_2|NZ_CP046507.1_3055536_3056412_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|612aa|down_3|NZ_CP046507.1_3056408_3058244_+	PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional	NA|559aa|down_4|NZ_CP046507.1_3058254_3059931_+	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold	NA|415aa|down_5|NZ_CP046507.1_3059917_3061162_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|877aa|down_6|NZ_CP046507.1_3061225_3063856_-	COG4717, COG4717, Uncharacterized conserved protein [Function unknown]	NA|384aa|down_7|NZ_CP046507.1_3063852_3065004_-	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|471aa|down_8|NZ_CP046507.1_3065250_3066663_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|473aa|down_9|NZ_CP046507.1_3066903_3068322_+	pfam02720, DUF222, Domain of unknown function (DUF222)
GCF_009741445.1_ASM974144v1	NZ_CP046507	Mycobacterium avium subsp. avium strain DSM 44156 chromosome, complete genome	3	4726448-4726524	3	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,cas4,RT,DinG	Orphan	GCGCGCCCATGGCGCTCGTCGCG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,cas4,RT,DinG	NA|185aa|up_3|NZ_CP046507.1_4721562_4722117_-,NA|234aa|up_1|NZ_CP046507.1_4723081_4723783_-,NA	NA|297aa|up_9|NZ_CP046507.1_4715805_4716696_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|242aa|up_8|NZ_CP046507.1_4716721_4717447_+	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain	NA|489aa|up_7|NZ_CP046507.1_4717505_4718972_+	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|370aa|up_6|NZ_CP046507.1_4719008_4720118_+	pfam09992, NAGPA, Phosphodiester glycosidase	NA|234aa|up_5|NZ_CP046507.1_4720110_4720812_-	pfam06912, DUF1275, Protein of unknown function (DUF1275)	NA|252aa|up_4|NZ_CP046507.1_4720840_4721596_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|185aa|up_3|NZ_CP046507.1_4721562_4722117_-	NA	NA|324aa|up_2|NZ_CP046507.1_4722113_4723085_-	pfam06271, RDD, RDD family	NA|234aa|up_1|NZ_CP046507.1_4723081_4723783_-	NA	NA|517aa|up_0|NZ_CP046507.1_4723752_4725303_-	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|538aa|down_0|NZ_CP046507.1_4726528_4728142_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|522aa|down_1|NZ_CP046507.1_4728138_4729704_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|347aa|down_2|NZ_CP046507.1_4729700_4730741_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|435aa|down_3|NZ_CP046507.1_4730737_4732042_-	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|290aa|down_4|NZ_CP046507.1_4732047_4732917_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|down_5|NZ_CP046507.1_4732918_4733734_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|529aa|down_6|NZ_CP046507.1_4734033_4735620_-	PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated	NA|147aa|down_7|NZ_CP046507.1_4736489_4736930_-	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|162aa|down_8|NZ_CP046507.1_4736973_4737459_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|371aa|down_9|NZ_CP046507.1_4737473_4738586_+	cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)
