assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009739885.1_ASM973988v1	NZ_CP034259	Staphylococcus aureus strain P1D12C1 chromosome, complete genome	1	420405-420506	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_8|NZ_CP034259.1_411964_412174_-,NA|128aa|up_6|NZ_CP034259.1_412998_413382_-,NA|33aa|up_0|NZ_CP034259.1_419629_419728_+,NA|221aa|down_1|NZ_CP034259.1_421596_422259_-,NA|179aa|down_7|NZ_CP034259.1_428350_428887_-	NA|84aa|up_9|NZ_CP034259.1_411674_411926_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP034259.1_411964_412174_-	NA	NA|194aa|up_7|NZ_CP034259.1_412351_412933_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP034259.1_412998_413382_-	NA	NA|209aa|up_5|NZ_CP034259.1_413651_414278_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP034259.1_414721_416245_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP034259.1_416260_416830_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP034259.1_417321_418077_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP034259.1_418156_419545_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NZ_CP034259.1_419629_419728_+	NA	NA|319aa|down_0|NZ_CP034259.1_420522_421479_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP034259.1_421596_422259_-	NA	NA|136aa|down_2|NZ_CP034259.1_422401_422809_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP034259.1_423321_423900_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP034259.1_423899_425168_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP034259.1_425205_426672_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP034259.1_426696_428238_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP034259.1_428350_428887_-	NA	NA|235aa|down_8|NZ_CP034259.1_429278_429983_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP034259.1_430381_430654_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_009739885.1_ASM973988v1	NZ_CP034259	Staphylococcus aureus strain P1D12C1 chromosome, complete genome	2	815127-815205	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	1	815151-815181	NZ_CP034259.1_1689229-1689259	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NZ_CP034259.1_806003_806108_+,NA|36aa|up_5|NZ_CP034259.1_807540_807648_+,NA	NA|191aa|up_9|NZ_CP034259.1_802444_803017_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP034259.1_803430_805962_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP034259.1_806003_806108_+	NA	NA|370aa|up_6|NZ_CP034259.1_806276_807387_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP034259.1_807540_807648_+	NA	NA|280aa|up_4|NZ_CP034259.1_807795_808635_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP034259.1_808808_809459_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP034259.1_809455_809692_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP034259.1_809960_811946_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP034259.1_811953_814800_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP034259.1_815463_816396_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP034259.1_816401_817241_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP034259.1_817248_817734_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP034259.1_817741_819181_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP034259.1_819247_820183_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP034259.1_821068_821980_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP034259.1_821976_822972_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP034259.1_823081_824026_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP034259.1_824589_825177_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP034259.1_825419_826322_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_009739885.1_ASM973988v1	NZ_CP034259	Staphylococcus aureus strain P1D12C1 chromosome, complete genome	3	820582-820851	1	CRT	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TTCTCTGTGTTGGGGCCCACACCCCAACTNGCATTG	36	4	44	820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820676-820698|820676-820698|820676-820698|820676-820698|820676-820698|820676-820698|820676-820698|820676-820698|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820793-820815|820793-820815|820793-820815|820793-820815|820793-820815|820793-820815|820793-820815|820793-820815	NZ_CP034259.1_773276-773297|NZ_CP034259.1_863919-863940|NZ_CP034259.1_1427281-1427302|NZ_CP034259.1_1654823-1654844|NZ_CP034259.1_1985785-1985806|NZ_CP034259.1_182254-182233|NZ_CP034259.1_182312-182291|NZ_CP034259.1_305389-305368|NZ_CP034259.1_648800-648779|NZ_CP034259.1_1338750-1338729|NZ_CP034259.1_1669378-1669357|NZ_CP034259.1_934152-934173|NZ_CP034259.1_1689084-1689105|NZ_CP034259.1_1689317-1689338|NZ_CP034259.1_774248-774226|NZ_CP034259.1_774470-774448|NZ_CP034259.1_1338867-1338845|NZ_CP034259.1_1985843-1985865|NZ_CP034259.1_2328573-2328595|NZ_CP034259.1_1427164-1427186|NZ_CP034259.1_2088382-2088404|NZ_CP034259.1_2088441-2088463|NZ_CP034259.1_773276-773297|NZ_CP034259.1_863919-863940|NZ_CP034259.1_1427281-1427302|NZ_CP034259.1_1654823-1654844|NZ_CP034259.1_1985785-1985806|NZ_CP034259.1_182254-182233|NZ_CP034259.1_182312-182291|NZ_CP034259.1_305389-305368|NZ_CP034259.1_648800-648779|NZ_CP034259.1_1338750-1338729|NZ_CP034259.1_1669378-1669357|NZ_CP034259.1_934152-934173|NZ_CP034259.1_1689084-1689105|NZ_CP034259.1_1689317-1689338|NZ_CP034259.1_774248-774226|NZ_CP034259.1_774470-774448|NZ_CP034259.1_1338867-1338845|NZ_CP034259.1_1985843-1985865|NZ_CP034259.1_2328573-2328595|NZ_CP034259.1_1427164-1427186|NZ_CP034259.1_2088382-2088404|NZ_CP034259.1_2088441-2088463	NA	4	4	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|280aa|up_9|NZ_CP034259.1_807795_808635_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP034259.1_808808_809459_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP034259.1_809455_809692_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP034259.1_809960_811946_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP034259.1_811953_814800_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP034259.1_815463_816396_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP034259.1_816401_817241_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP034259.1_817248_817734_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP034259.1_817741_819181_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP034259.1_819247_820183_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP034259.1_821068_821980_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP034259.1_821976_822972_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP034259.1_823081_824026_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP034259.1_824589_825177_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP034259.1_825419_826322_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP034259.1_827024_827654_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP034259.1_828466_829480_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP034259.1_829532_830543_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP034259.1_830681_831872_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP034259.1_831993_832755_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_009739885.1_ASM973988v1	NZ_CP034259	Staphylococcus aureus strain P1D12C1 chromosome, complete genome	4	863846-863927	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	863870-863903	NZ_CP034259.1_1338858-1338825	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|38aa|up_1|NZ_CP034259.1_862748_862862_+,NA	NA|206aa|up_9|NZ_CP034259.1_857602_858220_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP034259.1_858374_858869_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP034259.1_859267_859690_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP034259.1_859837_860554_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP034259.1_860636_861176_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP034259.1_861326_861647_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP034259.1_861790_862147_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP034259.1_862304_862685_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP034259.1_862748_862862_+	NA	NA|293aa|up_0|NZ_CP034259.1_862863_863742_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP034259.1_864538_864925_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP034259.1_864917_865214_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP034259.1_865463_866489_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP034259.1_866481_867177_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP034259.1_867194_868016_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP034259.1_868369_868564_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP034259.1_868797_869649_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP034259.1_869976_870738_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP034259.1_870835_872143_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP034259.1_872257_873499_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_009739885.1_ASM973988v1	NZ_CP034259	Staphylococcus aureus strain P1D12C1 chromosome, complete genome	5	1654747-1654831	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	1	1654773-1654805	NZ_CP034259.1_1338858-1338826	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|440aa|up_9|NZ_CP034259.1_1643545_1644865_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|59aa|up_8|NZ_CP034259.1_1645076_1645253_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP034259.1_1645352_1646699_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP034259.1_1646705_1647458_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP034259.1_1647459_1648398_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP034259.1_1648401_1649541_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP034259.1_1649676_1651509_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP034259.1_1651577_1652204_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP034259.1_1652235_1653213_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP034259.1_1653313_1654438_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP034259.1_1655003_1656827_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP034259.1_1657172_1657424_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP034259.1_1657468_1658443_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|NZ_CP034259.1_1658499_1660647_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP034259.1_1660705_1661167_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP034259.1_1661258_1661945_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP034259.1_1661984_1662701_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP034259.1_1662703_1663057_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP034259.1_1663057_1663642_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP034259.1_1663631_1664201_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_009739885.1_ASM973988v1	NZ_CP034259	Staphylococcus aureus strain P1D12C1 chromosome, complete genome	6	2219035-2219115	5	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|NZ_CP034259.1_2213909_2214140_-,NA|364aa|up_0|NZ_CP034259.1_2217926_2219018_+,NA|35aa|down_0|NZ_CP034259.1_2219450_2219555_-,NA|53aa|down_2|NZ_CP034259.1_2220234_2220393_+	NA|237aa|up_9|NZ_CP034259.1_2209520_2210231_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP034259.1_2210351_2210795_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP034259.1_2210994_2211408_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP034259.1_2211864_2213238_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP034259.1_2213909_2214140_-	NA	NA|313aa|up_4|NZ_CP034259.1_2214170_2215109_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP034259.1_2215544_2216210_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP034259.1_2216361_2216682_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP034259.1_2216683_2217661_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP034259.1_2217926_2219018_+	NA	NA|35aa|down_0|NZ_CP034259.1_2219450_2219555_-	NA	NA|57aa|down_1|NZ_CP034259.1_2220071_2220242_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|53aa|down_2|NZ_CP034259.1_2220234_2220393_+	NA	NA|286aa|down_3|NZ_CP034259.1_2221050_2221908_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP034259.1_2221975_2222758_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP034259.1_2222989_2224795_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP034259.1_2225475_2227014_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP034259.1_2227048_2229181_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP034259.1_2229192_2229627_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP034259.1_2229626_2230733_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_009739885.1_ASM973988v1	NZ_CP034259	Staphylococcus aureus strain P1D12C1 chromosome, complete genome	7	2231356-2231441	6	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_9|NZ_CP034259.1_2219450_2219555_-,NA|53aa|up_7|NZ_CP034259.1_2220234_2220393_+,NA	NA|35aa|up_9|NZ_CP034259.1_2219450_2219555_-	NA	NA|57aa|up_8|NZ_CP034259.1_2220071_2220242_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|53aa|up_7|NZ_CP034259.1_2220234_2220393_+	NA	NA|286aa|up_6|NZ_CP034259.1_2221050_2221908_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP034259.1_2221975_2222758_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP034259.1_2222989_2224795_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP034259.1_2225475_2227014_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP034259.1_2227048_2229181_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP034259.1_2229192_2229627_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP034259.1_2229626_2230733_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP034259.1_2238774_2240130_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP034259.1_2240156_2241089_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP034259.1_2241090_2241900_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP034259.1_2242088_2242997_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP034259.1_2249238_2250303_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP034259.1_2250450_2251893_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP034259.1_2252215_2252689_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP034259.1_2252787_2254131_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP034259.1_2254307_2254991_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP034259.1_2255009_2256197_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_009739885.1_ASM973988v1	NZ_CP034259	Staphylococcus aureus strain P1D12C1 chromosome, complete genome	8	2339402-2339482	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	16	2339427-2339457|2339427-2339457|2339427-2339457|2339427-2339457|2339427-2339457|2339427-2339457|2339427-2339457|2339427-2339457|2339427-2339457|2339427-2339457|2339427-2339457|2339427-2339457|2339427-2339457|2339427-2339457|2339427-2339457|2339427-2339457	NZ_CP034259.1_827869-827899|NZ_CP034259.1_827925-827955|NZ_CP034259.1_83391-83421|NZ_CP034259.1_827981-828011|NZ_CP034259.1_864182-864212|NZ_CP034259.1_1030150-1030180|NZ_CP034259.1_1427217-1427247|NZ_CP034259.1_1427333-1427363|NZ_CP034259.1_1984437-1984467|NZ_CP034259.1_2328626-2328656|NZ_CP034259.1_2504040-2504070|NZ_CP034259.1_381697-381667|NZ_CP034259.1_648864-648834|NZ_CP034259.1_1132715-1132685|NZ_CP034259.1_1338814-1338784|NZ_CP034259.1_1669441-1669411	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NZ_CP034259.1_2329935_2330100_+,NA|106aa|up_8|NZ_CP034259.1_2330344_2330662_+,NA|84aa|up_5|NZ_CP034259.1_2335783_2336035_+,NA|62aa|up_0|NZ_CP034259.1_2339174_2339360_+,NA	NA|55aa|up_9|NZ_CP034259.1_2329935_2330100_+	NA	NA|106aa|up_8|NZ_CP034259.1_2330344_2330662_+	NA	NA|1056aa|up_7|NZ_CP034259.1_2330845_2334013_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP034259.1_2334129_2335395_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP034259.1_2335783_2336035_+	NA	NA|255aa|up_4|NZ_CP034259.1_2336026_2336791_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP034259.1_2336952_2337393_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP034259.1_2337385_2338597_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP034259.1_2338698_2339049_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP034259.1_2339174_2339360_+	NA	NA|341aa|down_0|NZ_CP034259.1_2339625_2340648_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP034259.1_2340667_2341267_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP034259.1_2341273_2341507_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP034259.1_2341512_2341959_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP034259.1_2341972_2342458_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP034259.1_2342454_2343714_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP034259.1_2343776_2344271_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP034259.1_2344272_2344779_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP034259.1_2344809_2345814_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP034259.1_2345983_2346589_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
