assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009739845.1_ASM973984v1	NZ_CP034014	Staphylococcus aureus strain P1D1C1 chromosome, complete genome	1	420405-420506	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_8|NZ_CP034014.1_411964_412174_-,NA|128aa|up_6|NZ_CP034014.1_412998_413382_-,NA|33aa|up_0|NZ_CP034014.1_419629_419728_+,NA|221aa|down_1|NZ_CP034014.1_421596_422259_-,NA|179aa|down_7|NZ_CP034014.1_428350_428887_-	NA|84aa|up_9|NZ_CP034014.1_411674_411926_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP034014.1_411964_412174_-	NA	NA|194aa|up_7|NZ_CP034014.1_412351_412933_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP034014.1_412998_413382_-	NA	NA|209aa|up_5|NZ_CP034014.1_413651_414278_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP034014.1_414721_416245_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP034014.1_416260_416830_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP034014.1_417321_418077_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP034014.1_418156_419545_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NZ_CP034014.1_419629_419728_+	NA	NA|319aa|down_0|NZ_CP034014.1_420522_421479_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP034014.1_421596_422259_-	NA	NA|136aa|down_2|NZ_CP034014.1_422401_422809_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP034014.1_423321_423900_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP034014.1_423899_425168_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP034014.1_425205_426672_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP034014.1_426696_428238_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP034014.1_428350_428887_-	NA	NA|235aa|down_8|NZ_CP034014.1_429278_429983_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP034014.1_430381_430654_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_009739845.1_ASM973984v1	NZ_CP034014	Staphylococcus aureus strain P1D1C1 chromosome, complete genome	2	815127-815205	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NZ_CP034014.1_806003_806108_+,NA|36aa|up_5|NZ_CP034014.1_807540_807648_+,NA	NA|191aa|up_9|NZ_CP034014.1_802444_803017_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP034014.1_803430_805962_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP034014.1_806003_806108_+	NA	NA|370aa|up_6|NZ_CP034014.1_806276_807387_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP034014.1_807540_807648_+	NA	NA|280aa|up_4|NZ_CP034014.1_807795_808635_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP034014.1_808808_809459_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP034014.1_809455_809692_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP034014.1_809960_811946_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP034014.1_811953_814800_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP034014.1_815463_816396_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP034014.1_816401_817241_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP034014.1_817248_817734_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP034014.1_817741_819181_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP034014.1_819247_820183_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP034014.1_821068_821980_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP034014.1_821976_822972_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP034014.1_823081_824026_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP034014.1_824589_825177_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP034014.1_825419_826322_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_009739845.1_ASM973984v1	NZ_CP034014	Staphylococcus aureus strain P1D1C1 chromosome, complete genome	3	820582-820851	1	CRT	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TTCTCTGTGTTGGGGCCCACACCCCAACTNGCATTG	36	4	44	820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820676-820698|820676-820698|820676-820698|820676-820698|820676-820698|820676-820698|820676-820698|820676-820698|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820793-820815|820793-820815|820793-820815|820793-820815|820793-820815|820793-820815|820793-820815|820793-820815	NZ_CP034014.1_773276-773297|NZ_CP034014.1_863919-863940|NZ_CP034014.1_1427281-1427302|NZ_CP034014.1_1655016-1655037|NZ_CP034014.1_1985978-1985999|NZ_CP034014.1_182254-182233|NZ_CP034014.1_182312-182291|NZ_CP034014.1_305389-305368|NZ_CP034014.1_648800-648779|NZ_CP034014.1_1338750-1338729|NZ_CP034014.1_1669571-1669550|NZ_CP034014.1_934152-934173|NZ_CP034014.1_1689277-1689298|NZ_CP034014.1_1689510-1689531|NZ_CP034014.1_774248-774226|NZ_CP034014.1_774470-774448|NZ_CP034014.1_1338867-1338845|NZ_CP034014.1_1986036-1986058|NZ_CP034014.1_2328766-2328788|NZ_CP034014.1_1427164-1427186|NZ_CP034014.1_2088575-2088597|NZ_CP034014.1_2088634-2088656|NZ_CP034014.1_773276-773297|NZ_CP034014.1_863919-863940|NZ_CP034014.1_1427281-1427302|NZ_CP034014.1_1655016-1655037|NZ_CP034014.1_1985978-1985999|NZ_CP034014.1_182254-182233|NZ_CP034014.1_182312-182291|NZ_CP034014.1_305389-305368|NZ_CP034014.1_648800-648779|NZ_CP034014.1_1338750-1338729|NZ_CP034014.1_1669571-1669550|NZ_CP034014.1_934152-934173|NZ_CP034014.1_1689277-1689298|NZ_CP034014.1_1689510-1689531|NZ_CP034014.1_774248-774226|NZ_CP034014.1_774470-774448|NZ_CP034014.1_1338867-1338845|NZ_CP034014.1_1986036-1986058|NZ_CP034014.1_2328766-2328788|NZ_CP034014.1_1427164-1427186|NZ_CP034014.1_2088575-2088597|NZ_CP034014.1_2088634-2088656	NA	4	4	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|280aa|up_9|NZ_CP034014.1_807795_808635_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP034014.1_808808_809459_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP034014.1_809455_809692_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP034014.1_809960_811946_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP034014.1_811953_814800_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP034014.1_815463_816396_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP034014.1_816401_817241_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP034014.1_817248_817734_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP034014.1_817741_819181_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP034014.1_819247_820183_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP034014.1_821068_821980_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP034014.1_821976_822972_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP034014.1_823081_824026_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP034014.1_824589_825177_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP034014.1_825419_826322_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP034014.1_827024_827654_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP034014.1_828466_829480_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP034014.1_829532_830543_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP034014.1_830681_831872_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP034014.1_831993_832755_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_009739845.1_ASM973984v1	NZ_CP034014	Staphylococcus aureus strain P1D1C1 chromosome, complete genome	4	863846-863927	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	863870-863903	NZ_CP034014.1_1338858-1338825	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|38aa|up_1|NZ_CP034014.1_862748_862862_+,NA	NA|206aa|up_9|NZ_CP034014.1_857602_858220_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP034014.1_858374_858869_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP034014.1_859267_859690_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP034014.1_859837_860554_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP034014.1_860636_861176_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP034014.1_861326_861647_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP034014.1_861790_862147_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP034014.1_862304_862685_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP034014.1_862748_862862_+	NA	NA|293aa|up_0|NZ_CP034014.1_862863_863742_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP034014.1_864538_864925_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP034014.1_864917_865214_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP034014.1_865463_866489_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP034014.1_866481_867177_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP034014.1_867194_868016_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP034014.1_868369_868564_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP034014.1_868797_869649_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP034014.1_869976_870738_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP034014.1_870835_872143_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP034014.1_872257_873499_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_009739845.1_ASM973984v1	NZ_CP034014	Staphylococcus aureus strain P1D1C1 chromosome, complete genome	5	1654940-1655024	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	1	1654966-1654998	NZ_CP034014.1_1338858-1338826	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|440aa|up_9|NZ_CP034014.1_1643545_1644865_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|59aa|up_8|NZ_CP034014.1_1645076_1645253_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP034014.1_1645545_1646892_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP034014.1_1646898_1647651_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP034014.1_1647652_1648591_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP034014.1_1648594_1649734_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP034014.1_1649869_1651702_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP034014.1_1651770_1652397_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP034014.1_1652428_1653406_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP034014.1_1653506_1654631_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP034014.1_1655196_1657020_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP034014.1_1657365_1657617_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP034014.1_1657661_1658636_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|NZ_CP034014.1_1658692_1660840_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP034014.1_1660898_1661360_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP034014.1_1661451_1662138_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP034014.1_1662177_1662894_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP034014.1_1662896_1663250_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP034014.1_1663250_1663835_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP034014.1_1663824_1664394_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_009739845.1_ASM973984v1	NZ_CP034014	Staphylococcus aureus strain P1D1C1 chromosome, complete genome	6	1689370-1689517	1	PILER-CR	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CTATGTTGGGGCCCCGTCCCCAACTTCCATTGCCTGT	37	1	4	1689477-1689498|1689477-1689498|1689477-1689498|1689477-1689498	NZ_CP034014.1_2088463-2088484|NZ_CP034014.1_2088580-2088601|NZ_CP034014.1_2088639-2088660|NZ_CP034014.1_1127283-1127262	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA|49aa|down_3|NZ_CP034014.1_1693507_1693654_-,NA|43aa|down_8|NZ_CP034014.1_1696690_1696819_-	NA|208aa|up_9|NZ_CP034014.1_1678039_1678663_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NZ_CP034014.1_1678662_1679931_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NZ_CP034014.1_1679942_1680866_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NZ_CP034014.1_1680868_1681507_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NZ_CP034014.1_1681791_1682100_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NZ_CP034014.1_1682114_1682543_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NZ_CP034014.1_1682546_1682807_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NZ_CP034014.1_1682869_1685500_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NZ_CP034014.1_1685842_1688320_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NZ_CP034014.1_1688321_1688990_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NZ_CP034014.1_1689684_1690803_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NZ_CP034014.1_1690803_1691946_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NZ_CP034014.1_1692257_1693271_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NZ_CP034014.1_1693507_1693654_-	NA	NA|61aa|down_4|NZ_CP034014.1_1693693_1693876_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NZ_CP034014.1_1693975_1694398_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NZ_CP034014.1_1694482_1695757_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NZ_CP034014.1_1695917_1696691_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NZ_CP034014.1_1696690_1696819_-	NA	NA|589aa|down_9|NZ_CP034014.1_1697151_1698918_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_009739845.1_ASM973984v1	NZ_CP034014	Staphylococcus aureus strain P1D1C1 chromosome, complete genome	7	2219228-2219308	5	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|NZ_CP034014.1_2214102_2214333_-,NA|364aa|up_0|NZ_CP034014.1_2218119_2219211_+,NA|35aa|down_0|NZ_CP034014.1_2219643_2219748_-,NA|53aa|down_2|NZ_CP034014.1_2220427_2220586_+	NA|237aa|up_9|NZ_CP034014.1_2209713_2210424_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP034014.1_2210544_2210988_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP034014.1_2211187_2211601_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP034014.1_2212057_2213431_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP034014.1_2214102_2214333_-	NA	NA|313aa|up_4|NZ_CP034014.1_2214363_2215302_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP034014.1_2215737_2216403_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP034014.1_2216554_2216875_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP034014.1_2216876_2217854_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP034014.1_2218119_2219211_+	NA	NA|35aa|down_0|NZ_CP034014.1_2219643_2219748_-	NA	NA|57aa|down_1|NZ_CP034014.1_2220264_2220435_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|53aa|down_2|NZ_CP034014.1_2220427_2220586_+	NA	NA|286aa|down_3|NZ_CP034014.1_2221243_2222101_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP034014.1_2222168_2222951_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP034014.1_2223182_2224988_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP034014.1_2225668_2227207_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP034014.1_2227241_2229374_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP034014.1_2229385_2229820_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP034014.1_2229819_2230926_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_009739845.1_ASM973984v1	NZ_CP034014	Staphylococcus aureus strain P1D1C1 chromosome, complete genome	8	2231549-2231634	6	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_9|NZ_CP034014.1_2219643_2219748_-,NA|53aa|up_7|NZ_CP034014.1_2220427_2220586_+,NA	NA|35aa|up_9|NZ_CP034014.1_2219643_2219748_-	NA	NA|57aa|up_8|NZ_CP034014.1_2220264_2220435_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|53aa|up_7|NZ_CP034014.1_2220427_2220586_+	NA	NA|286aa|up_6|NZ_CP034014.1_2221243_2222101_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP034014.1_2222168_2222951_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP034014.1_2223182_2224988_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP034014.1_2225668_2227207_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP034014.1_2227241_2229374_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP034014.1_2229385_2229820_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP034014.1_2229819_2230926_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP034014.1_2238967_2240323_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP034014.1_2240349_2241282_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP034014.1_2241283_2242093_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP034014.1_2242281_2243190_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP034014.1_2249431_2250496_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP034014.1_2250643_2252086_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP034014.1_2252408_2252882_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP034014.1_2252980_2254324_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP034014.1_2254500_2255184_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP034014.1_2255202_2256390_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_009739845.1_ASM973984v1	NZ_CP034014	Staphylococcus aureus strain P1D1C1 chromosome, complete genome	9	2339595-2339675	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	16	2339620-2339650|2339620-2339650|2339620-2339650|2339620-2339650|2339620-2339650|2339620-2339650|2339620-2339650|2339620-2339650|2339620-2339650|2339620-2339650|2339620-2339650|2339620-2339650|2339620-2339650|2339620-2339650|2339620-2339650|2339620-2339650	NZ_CP034014.1_827869-827899|NZ_CP034014.1_827925-827955|NZ_CP034014.1_83391-83421|NZ_CP034014.1_827981-828011|NZ_CP034014.1_864182-864212|NZ_CP034014.1_1030150-1030180|NZ_CP034014.1_1427217-1427247|NZ_CP034014.1_1427333-1427363|NZ_CP034014.1_1984630-1984660|NZ_CP034014.1_2328819-2328849|NZ_CP034014.1_2504233-2504263|NZ_CP034014.1_381697-381667|NZ_CP034014.1_648864-648834|NZ_CP034014.1_1132715-1132685|NZ_CP034014.1_1338814-1338784|NZ_CP034014.1_1669634-1669604	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NZ_CP034014.1_2330128_2330293_+,NA|106aa|up_8|NZ_CP034014.1_2330537_2330855_+,NA|84aa|up_5|NZ_CP034014.1_2335976_2336228_+,NA|62aa|up_0|NZ_CP034014.1_2339367_2339553_+,NA	NA|55aa|up_9|NZ_CP034014.1_2330128_2330293_+	NA	NA|106aa|up_8|NZ_CP034014.1_2330537_2330855_+	NA	NA|1056aa|up_7|NZ_CP034014.1_2331038_2334206_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP034014.1_2334322_2335588_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP034014.1_2335976_2336228_+	NA	NA|255aa|up_4|NZ_CP034014.1_2336219_2336984_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP034014.1_2337145_2337586_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP034014.1_2337578_2338790_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP034014.1_2338891_2339242_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP034014.1_2339367_2339553_+	NA	NA|341aa|down_0|NZ_CP034014.1_2339818_2340841_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP034014.1_2340860_2341460_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP034014.1_2341466_2341700_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP034014.1_2341705_2342152_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP034014.1_2342165_2342651_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP034014.1_2342647_2343907_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP034014.1_2343969_2344464_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP034014.1_2344465_2344972_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP034014.1_2345002_2346007_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP034014.1_2346176_2346782_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
