assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009739795.1_ASM973979v1	NZ_CP034005	Staphylococcus aureus strain P1D7C1 chromosome, complete genome	1	420405-420506	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_8|NZ_CP034005.1_411964_412174_-,NA|128aa|up_6|NZ_CP034005.1_412998_413382_-,NA|33aa|up_0|NZ_CP034005.1_419629_419728_+,NA|221aa|down_1|NZ_CP034005.1_421596_422259_-,NA|179aa|down_7|NZ_CP034005.1_428350_428887_-	NA|84aa|up_9|NZ_CP034005.1_411674_411926_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP034005.1_411964_412174_-	NA	NA|194aa|up_7|NZ_CP034005.1_412351_412933_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP034005.1_412998_413382_-	NA	NA|209aa|up_5|NZ_CP034005.1_413651_414278_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP034005.1_414721_416245_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP034005.1_416260_416830_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP034005.1_417321_418077_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP034005.1_418156_419545_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NZ_CP034005.1_419629_419728_+	NA	NA|319aa|down_0|NZ_CP034005.1_420522_421479_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP034005.1_421596_422259_-	NA	NA|136aa|down_2|NZ_CP034005.1_422401_422809_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP034005.1_423321_423900_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP034005.1_423899_425168_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP034005.1_425205_426672_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP034005.1_426696_428238_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP034005.1_428350_428887_-	NA	NA|235aa|down_8|NZ_CP034005.1_429278_429983_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP034005.1_430381_430654_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_009739795.1_ASM973979v1	NZ_CP034005	Staphylococcus aureus strain P1D7C1 chromosome, complete genome	2	815127-815205	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NZ_CP034005.1_806003_806108_+,NA|36aa|up_5|NZ_CP034005.1_807540_807648_+,NA	NA|191aa|up_9|NZ_CP034005.1_802444_803017_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP034005.1_803430_805962_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP034005.1_806003_806108_+	NA	NA|370aa|up_6|NZ_CP034005.1_806276_807387_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP034005.1_807540_807648_+	NA	NA|280aa|up_4|NZ_CP034005.1_807795_808635_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP034005.1_808808_809459_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP034005.1_809455_809692_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP034005.1_809960_811946_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP034005.1_811953_814800_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP034005.1_815463_816396_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP034005.1_816401_817241_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP034005.1_817248_817734_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP034005.1_817741_819181_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP034005.1_819247_820183_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP034005.1_821068_821980_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP034005.1_821976_822972_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP034005.1_823081_824026_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP034005.1_824589_825177_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP034005.1_825419_826322_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_009739795.1_ASM973979v1	NZ_CP034005	Staphylococcus aureus strain P1D7C1 chromosome, complete genome	3	820582-820851	1	CRT	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TTCTCTGTGTTGGGGCCCACACCCCAACTNGCATTG	36	4	44	820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820618-820639|820676-820698|820676-820698|820676-820698|820676-820698|820676-820698|820676-820698|820676-820698|820676-820698|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820735-820756|820793-820815|820793-820815|820793-820815|820793-820815|820793-820815|820793-820815|820793-820815|820793-820815	NZ_CP034005.1_773276-773297|NZ_CP034005.1_863919-863940|NZ_CP034005.1_1427280-1427301|NZ_CP034005.1_1655015-1655036|NZ_CP034005.1_1985977-1985998|NZ_CP034005.1_182254-182233|NZ_CP034005.1_182312-182291|NZ_CP034005.1_305389-305368|NZ_CP034005.1_648800-648779|NZ_CP034005.1_1338749-1338728|NZ_CP034005.1_1669570-1669549|NZ_CP034005.1_934152-934173|NZ_CP034005.1_1689276-1689297|NZ_CP034005.1_1689509-1689530|NZ_CP034005.1_774248-774226|NZ_CP034005.1_774470-774448|NZ_CP034005.1_1338866-1338844|NZ_CP034005.1_1986035-1986057|NZ_CP034005.1_2328765-2328787|NZ_CP034005.1_1427163-1427185|NZ_CP034005.1_2088574-2088596|NZ_CP034005.1_2088633-2088655|NZ_CP034005.1_773276-773297|NZ_CP034005.1_863919-863940|NZ_CP034005.1_1427280-1427301|NZ_CP034005.1_1655015-1655036|NZ_CP034005.1_1985977-1985998|NZ_CP034005.1_182254-182233|NZ_CP034005.1_182312-182291|NZ_CP034005.1_305389-305368|NZ_CP034005.1_648800-648779|NZ_CP034005.1_1338749-1338728|NZ_CP034005.1_1669570-1669549|NZ_CP034005.1_934152-934173|NZ_CP034005.1_1689276-1689297|NZ_CP034005.1_1689509-1689530|NZ_CP034005.1_774248-774226|NZ_CP034005.1_774470-774448|NZ_CP034005.1_1338866-1338844|NZ_CP034005.1_1986035-1986057|NZ_CP034005.1_2328765-2328787|NZ_CP034005.1_1427163-1427185|NZ_CP034005.1_2088574-2088596|NZ_CP034005.1_2088633-2088655	NA	4	4	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|280aa|up_9|NZ_CP034005.1_807795_808635_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP034005.1_808808_809459_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP034005.1_809455_809692_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP034005.1_809960_811946_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP034005.1_811953_814800_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP034005.1_815463_816396_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP034005.1_816401_817241_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP034005.1_817248_817734_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP034005.1_817741_819181_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP034005.1_819247_820183_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP034005.1_821068_821980_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP034005.1_821976_822972_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP034005.1_823081_824026_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP034005.1_824589_825177_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP034005.1_825419_826322_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP034005.1_827024_827654_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP034005.1_828466_829480_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP034005.1_829532_830543_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP034005.1_830681_831872_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP034005.1_831993_832755_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_009739795.1_ASM973979v1	NZ_CP034005	Staphylococcus aureus strain P1D7C1 chromosome, complete genome	4	863846-863927	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	863870-863903	NZ_CP034005.1_1338857-1338824	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|38aa|up_1|NZ_CP034005.1_862748_862862_+,NA	NA|206aa|up_9|NZ_CP034005.1_857602_858220_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP034005.1_858374_858869_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP034005.1_859267_859690_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP034005.1_859837_860554_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP034005.1_860636_861176_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP034005.1_861326_861647_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP034005.1_861790_862147_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP034005.1_862304_862685_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP034005.1_862748_862862_+	NA	NA|293aa|up_0|NZ_CP034005.1_862863_863742_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP034005.1_864538_864925_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP034005.1_864917_865214_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP034005.1_865463_866489_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP034005.1_866481_867177_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP034005.1_867194_868016_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP034005.1_868369_868564_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP034005.1_868797_869649_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP034005.1_869976_870738_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP034005.1_870835_872143_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP034005.1_872257_873499_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_009739795.1_ASM973979v1	NZ_CP034005	Staphylococcus aureus strain P1D7C1 chromosome, complete genome	5	1654939-1655023	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	1	1654965-1654997	NZ_CP034005.1_1338857-1338825	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|440aa|up_9|NZ_CP034005.1_1643544_1644864_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|59aa|up_8|NZ_CP034005.1_1645075_1645252_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP034005.1_1645544_1646891_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP034005.1_1646897_1647650_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP034005.1_1647651_1648590_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP034005.1_1648593_1649733_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP034005.1_1649868_1651701_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP034005.1_1651769_1652396_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP034005.1_1652427_1653405_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP034005.1_1653505_1654630_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP034005.1_1655195_1657019_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP034005.1_1657364_1657616_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP034005.1_1657660_1658635_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|NZ_CP034005.1_1658691_1660839_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP034005.1_1660897_1661359_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP034005.1_1661450_1662137_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP034005.1_1662176_1662893_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP034005.1_1662895_1663249_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP034005.1_1663249_1663834_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP034005.1_1663823_1664393_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_009739795.1_ASM973979v1	NZ_CP034005	Staphylococcus aureus strain P1D7C1 chromosome, complete genome	6	1689369-1689516	1	PILER-CR	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CTATGTTGGGGCCCCGTCCCCAACTTCCATTGCCTGT	37	1	4	1689476-1689497|1689476-1689497|1689476-1689497|1689476-1689497	NZ_CP034005.1_2088462-2088483|NZ_CP034005.1_2088579-2088600|NZ_CP034005.1_2088638-2088659|NZ_CP034005.1_1127283-1127262	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA|49aa|down_3|NZ_CP034005.1_1693506_1693653_-,NA|43aa|down_8|NZ_CP034005.1_1696689_1696818_-	NA|208aa|up_9|NZ_CP034005.1_1678038_1678662_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NZ_CP034005.1_1678661_1679930_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NZ_CP034005.1_1679941_1680865_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NZ_CP034005.1_1680867_1681506_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NZ_CP034005.1_1681790_1682099_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NZ_CP034005.1_1682113_1682542_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NZ_CP034005.1_1682545_1682806_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NZ_CP034005.1_1682868_1685499_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NZ_CP034005.1_1685841_1688319_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NZ_CP034005.1_1688320_1688989_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NZ_CP034005.1_1689683_1690802_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NZ_CP034005.1_1690802_1691945_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NZ_CP034005.1_1692256_1693270_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NZ_CP034005.1_1693506_1693653_-	NA	NA|61aa|down_4|NZ_CP034005.1_1693692_1693875_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NZ_CP034005.1_1693974_1694397_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NZ_CP034005.1_1694481_1695756_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NZ_CP034005.1_1695916_1696690_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NZ_CP034005.1_1696689_1696818_-	NA	NA|589aa|down_9|NZ_CP034005.1_1697150_1698917_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_009739795.1_ASM973979v1	NZ_CP034005	Staphylococcus aureus strain P1D7C1 chromosome, complete genome	7	2219227-2219307	5	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|NZ_CP034005.1_2214101_2214332_-,NA|364aa|up_0|NZ_CP034005.1_2218118_2219210_+,NA|35aa|down_0|NZ_CP034005.1_2219642_2219747_-,NA|53aa|down_1|NZ_CP034005.1_2220426_2220585_+	NA|237aa|up_9|NZ_CP034005.1_2209712_2210423_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP034005.1_2210543_2210987_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP034005.1_2211186_2211600_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP034005.1_2212056_2213430_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP034005.1_2214101_2214332_-	NA	NA|313aa|up_4|NZ_CP034005.1_2214362_2215301_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP034005.1_2215736_2216402_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP034005.1_2216553_2216874_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP034005.1_2216875_2217853_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP034005.1_2218118_2219210_+	NA	NA|35aa|down_0|NZ_CP034005.1_2219642_2219747_-	NA	NA|53aa|down_1|NZ_CP034005.1_2220426_2220585_+	NA	NA|286aa|down_2|NZ_CP034005.1_2221242_2222100_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP034005.1_2222167_2222950_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP034005.1_2223181_2224987_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP034005.1_2225667_2227206_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP034005.1_2227240_2229373_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP034005.1_2229384_2229819_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP034005.1_2229818_2230925_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NZ_CP034005.1_2231243_2238689_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_009739795.1_ASM973979v1	NZ_CP034005	Staphylococcus aureus strain P1D7C1 chromosome, complete genome	8	2231548-2231633	6	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|364aa|up_9|NZ_CP034005.1_2218118_2219210_+,NA|35aa|up_8|NZ_CP034005.1_2219642_2219747_-,NA|53aa|up_7|NZ_CP034005.1_2220426_2220585_+,NA	NA|364aa|up_9|NZ_CP034005.1_2218118_2219210_+	NA	NA|35aa|up_8|NZ_CP034005.1_2219642_2219747_-	NA	NA|53aa|up_7|NZ_CP034005.1_2220426_2220585_+	NA	NA|286aa|up_6|NZ_CP034005.1_2221242_2222100_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP034005.1_2222167_2222950_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP034005.1_2223181_2224987_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP034005.1_2225667_2227206_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP034005.1_2227240_2229373_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP034005.1_2229384_2229819_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP034005.1_2229818_2230925_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP034005.1_2238966_2240322_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP034005.1_2240348_2241281_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP034005.1_2241282_2242092_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP034005.1_2242280_2243189_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP034005.1_2249430_2250495_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP034005.1_2250642_2252085_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP034005.1_2252407_2252881_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP034005.1_2252979_2254323_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP034005.1_2254499_2255183_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP034005.1_2255201_2256389_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_009739795.1_ASM973979v1	NZ_CP034005	Staphylococcus aureus strain P1D7C1 chromosome, complete genome	9	2339594-2339674	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	16	2339619-2339649|2339619-2339649|2339619-2339649|2339619-2339649|2339619-2339649|2339619-2339649|2339619-2339649|2339619-2339649|2339619-2339649|2339619-2339649|2339619-2339649|2339619-2339649|2339619-2339649|2339619-2339649|2339619-2339649|2339619-2339649	NZ_CP034005.1_827869-827899|NZ_CP034005.1_827925-827955|NZ_CP034005.1_83391-83421|NZ_CP034005.1_827981-828011|NZ_CP034005.1_864182-864212|NZ_CP034005.1_1030150-1030180|NZ_CP034005.1_1427216-1427246|NZ_CP034005.1_1427332-1427362|NZ_CP034005.1_1984629-1984659|NZ_CP034005.1_2328818-2328848|NZ_CP034005.1_2504232-2504262|NZ_CP034005.1_381697-381667|NZ_CP034005.1_648864-648834|NZ_CP034005.1_1132715-1132685|NZ_CP034005.1_1338813-1338783|NZ_CP034005.1_1669633-1669603	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NZ_CP034005.1_2330127_2330292_+,NA|106aa|up_8|NZ_CP034005.1_2330536_2330854_+,NA|84aa|up_5|NZ_CP034005.1_2335975_2336227_+,NA|62aa|up_0|NZ_CP034005.1_2339366_2339552_+,NA	NA|55aa|up_9|NZ_CP034005.1_2330127_2330292_+	NA	NA|106aa|up_8|NZ_CP034005.1_2330536_2330854_+	NA	NA|1056aa|up_7|NZ_CP034005.1_2331037_2334205_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP034005.1_2334321_2335587_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP034005.1_2335975_2336227_+	NA	NA|255aa|up_4|NZ_CP034005.1_2336218_2336983_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP034005.1_2337144_2337585_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP034005.1_2337577_2338789_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP034005.1_2338890_2339241_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP034005.1_2339366_2339552_+	NA	NA|341aa|down_0|NZ_CP034005.1_2339817_2340840_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP034005.1_2340859_2341459_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP034005.1_2341465_2341699_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP034005.1_2341704_2342151_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP034005.1_2342164_2342650_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP034005.1_2342646_2343906_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP034005.1_2343968_2344463_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP034005.1_2344464_2344971_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP034005.1_2345001_2346006_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP034005.1_2346175_2346781_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
