assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009739695.1_ASM973969v1	NZ_CP033987	Staphylococcus aureus strain P2D1C1 chromosome, complete genome	1	465453-465554	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_8|NZ_CP033987.1_457012_457222_-,NA|128aa|up_6|NZ_CP033987.1_458046_458430_-,NA|33aa|up_0|NZ_CP033987.1_464677_464776_+,NA|221aa|down_1|NZ_CP033987.1_466644_467307_-,NA|179aa|down_7|NZ_CP033987.1_473398_473935_-	NA|84aa|up_9|NZ_CP033987.1_456722_456974_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP033987.1_457012_457222_-	NA	NA|194aa|up_7|NZ_CP033987.1_457399_457981_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP033987.1_458046_458430_-	NA	NA|209aa|up_5|NZ_CP033987.1_458699_459326_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP033987.1_459769_461293_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP033987.1_461308_461878_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP033987.1_462369_463125_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP033987.1_463204_464593_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NZ_CP033987.1_464677_464776_+	NA	NA|319aa|down_0|NZ_CP033987.1_465570_466527_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP033987.1_466644_467307_-	NA	NA|136aa|down_2|NZ_CP033987.1_467449_467857_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP033987.1_468369_468948_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP033987.1_468947_470216_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP033987.1_470253_471720_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP033987.1_471744_473286_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP033987.1_473398_473935_-	NA	NA|235aa|down_8|NZ_CP033987.1_474326_475031_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP033987.1_475429_475702_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_009739695.1_ASM973969v1	NZ_CP033987	Staphylococcus aureus strain P2D1C1 chromosome, complete genome	2	860102-860180	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	2	860126-860156|860126-860156	NZ_CP033987.1_334981-334951|NZ_CP033987.1_334926-334896	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NZ_CP033987.1_850978_851083_+,NA|36aa|up_5|NZ_CP033987.1_852515_852623_+,NA	NA|191aa|up_9|NZ_CP033987.1_847419_847992_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP033987.1_848405_850937_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP033987.1_850978_851083_+	NA	NA|370aa|up_6|NZ_CP033987.1_851251_852362_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP033987.1_852515_852623_+	NA	NA|280aa|up_4|NZ_CP033987.1_852770_853610_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP033987.1_853783_854434_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP033987.1_854430_854667_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP033987.1_854935_856921_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP033987.1_856928_859775_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP033987.1_860438_861371_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP033987.1_861376_862216_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP033987.1_862223_862709_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP033987.1_862716_864156_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP033987.1_864222_865158_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP033987.1_866043_866955_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP033987.1_866951_867947_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP033987.1_868057_869002_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP033987.1_869565_870153_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP033987.1_870395_871298_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_009739695.1_ASM973969v1	NZ_CP033987	Staphylococcus aureus strain P2D1C1 chromosome, complete genome	3	865557-865826	1	CRT	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TTCTCTGTGTTGGGGCCCACACCCCAACTNGCATTG	36	4	46	865593-865614|865593-865614|865593-865614|865593-865614|865593-865614|865593-865614|865593-865614|865593-865614|865593-865614|865593-865614|865593-865614|865593-865614|865593-865614|865593-865614|865593-865614|865651-865673|865651-865673|865651-865673|865651-865673|865651-865673|865651-865673|865651-865673|865651-865673|865710-865731|865710-865731|865710-865731|865710-865731|865710-865731|865710-865731|865710-865731|865710-865731|865710-865731|865710-865731|865710-865731|865710-865731|865710-865731|865710-865731|865710-865731|865768-865790|865768-865790|865768-865790|865768-865790|865768-865790|865768-865790|865768-865790|865768-865790	NZ_CP033987.1_818252-818273|NZ_CP033987.1_908895-908916|NZ_CP033987.1_1473832-1473853|NZ_CP033987.1_1701567-1701588|NZ_CP033987.1_2032529-2032550|NZ_CP033987.1_211762-211741|NZ_CP033987.1_211820-211799|NZ_CP033987.1_334897-334876|NZ_CP033987.1_335007-334986|NZ_CP033987.1_693765-693744|NZ_CP033987.1_1385301-1385280|NZ_CP033987.1_1716122-1716101|NZ_CP033987.1_979128-979149|NZ_CP033987.1_1735828-1735849|NZ_CP033987.1_1736061-1736082|NZ_CP033987.1_819224-819202|NZ_CP033987.1_819446-819424|NZ_CP033987.1_1385418-1385396|NZ_CP033987.1_2032587-2032609|NZ_CP033987.1_2375317-2375339|NZ_CP033987.1_1473715-1473737|NZ_CP033987.1_2135126-2135148|NZ_CP033987.1_2135185-2135207|NZ_CP033987.1_818252-818273|NZ_CP033987.1_908895-908916|NZ_CP033987.1_1473832-1473853|NZ_CP033987.1_1701567-1701588|NZ_CP033987.1_2032529-2032550|NZ_CP033987.1_211762-211741|NZ_CP033987.1_211820-211799|NZ_CP033987.1_334897-334876|NZ_CP033987.1_335007-334986|NZ_CP033987.1_693765-693744|NZ_CP033987.1_1385301-1385280|NZ_CP033987.1_1716122-1716101|NZ_CP033987.1_979128-979149|NZ_CP033987.1_1735828-1735849|NZ_CP033987.1_1736061-1736082|NZ_CP033987.1_819224-819202|NZ_CP033987.1_819446-819424|NZ_CP033987.1_1385418-1385396|NZ_CP033987.1_2032587-2032609|NZ_CP033987.1_2375317-2375339|NZ_CP033987.1_1473715-1473737|NZ_CP033987.1_2135126-2135148|NZ_CP033987.1_2135185-2135207	NA	4	4	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|280aa|up_9|NZ_CP033987.1_852770_853610_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP033987.1_853783_854434_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP033987.1_854430_854667_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP033987.1_854935_856921_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP033987.1_856928_859775_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP033987.1_860438_861371_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP033987.1_861376_862216_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP033987.1_862223_862709_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP033987.1_862716_864156_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP033987.1_864222_865158_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP033987.1_866043_866955_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP033987.1_866951_867947_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP033987.1_868057_869002_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP033987.1_869565_870153_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP033987.1_870395_871298_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP033987.1_872000_872630_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP033987.1_873442_874456_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP033987.1_874508_875519_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP033987.1_875657_876848_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP033987.1_876969_877731_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_009739695.1_ASM973969v1	NZ_CP033987	Staphylococcus aureus strain P2D1C1 chromosome, complete genome	4	908822-908903	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	908846-908879	NZ_CP033987.1_1385409-1385376	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|38aa|up_1|NZ_CP033987.1_907724_907838_+,NA	NA|206aa|up_9|NZ_CP033987.1_902578_903196_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP033987.1_903350_903845_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP033987.1_904243_904666_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP033987.1_904813_905530_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP033987.1_905612_906152_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP033987.1_906302_906623_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP033987.1_906766_907123_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP033987.1_907280_907661_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP033987.1_907724_907838_+	NA	NA|293aa|up_0|NZ_CP033987.1_907839_908718_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP033987.1_909514_909901_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP033987.1_909893_910190_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP033987.1_910439_911465_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP033987.1_911457_912153_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP033987.1_912170_912992_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP033987.1_913345_913540_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP033987.1_913773_914625_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP033987.1_914952_915714_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP033987.1_915811_917119_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP033987.1_917233_918475_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_009739695.1_ASM973969v1	NZ_CP033987	Staphylococcus aureus strain P2D1C1 chromosome, complete genome	5	1701491-1701575	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	1	1701517-1701549	NZ_CP033987.1_1385409-1385377	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|440aa|up_9|NZ_CP033987.1_1690096_1691416_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|59aa|up_8|NZ_CP033987.1_1691627_1691804_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP033987.1_1692096_1693443_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP033987.1_1693449_1694202_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP033987.1_1694203_1695142_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP033987.1_1695145_1696285_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP033987.1_1696420_1698253_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP033987.1_1698321_1698948_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP033987.1_1698979_1699957_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP033987.1_1700057_1701182_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP033987.1_1701747_1703571_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP033987.1_1703916_1704168_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP033987.1_1704212_1705187_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|NZ_CP033987.1_1705243_1707391_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP033987.1_1707449_1707911_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP033987.1_1708002_1708689_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP033987.1_1708728_1709445_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP033987.1_1709447_1709801_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP033987.1_1709801_1710386_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP033987.1_1710375_1710945_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_009739695.1_ASM973969v1	NZ_CP033987	Staphylococcus aureus strain P2D1C1 chromosome, complete genome	6	1735921-1736068	1	PILER-CR	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CTATGTTGGGGCCCCGTCCCCAACTTCCATTGCCTGT	37	1	4	1736028-1736049|1736028-1736049|1736028-1736049|1736028-1736049	NZ_CP033987.1_2135014-2135035|NZ_CP033987.1_2135131-2135152|NZ_CP033987.1_2135190-2135211|NZ_CP033987.1_1172258-1172237	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA|49aa|down_3|NZ_CP033987.1_1740058_1740205_-,NA|43aa|down_8|NZ_CP033987.1_1743241_1743370_-	NA|208aa|up_9|NZ_CP033987.1_1724590_1725214_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NZ_CP033987.1_1725213_1726482_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NZ_CP033987.1_1726493_1727417_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NZ_CP033987.1_1727419_1728058_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NZ_CP033987.1_1728342_1728651_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NZ_CP033987.1_1728665_1729094_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NZ_CP033987.1_1729097_1729358_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NZ_CP033987.1_1729420_1732051_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NZ_CP033987.1_1732393_1734871_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NZ_CP033987.1_1734872_1735541_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NZ_CP033987.1_1736235_1737354_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NZ_CP033987.1_1737354_1738497_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NZ_CP033987.1_1738808_1739822_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NZ_CP033987.1_1740058_1740205_-	NA	NA|61aa|down_4|NZ_CP033987.1_1740244_1740427_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NZ_CP033987.1_1740526_1740949_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NZ_CP033987.1_1741033_1742308_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NZ_CP033987.1_1742468_1743242_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NZ_CP033987.1_1743241_1743370_-	NA	NA|589aa|down_9|NZ_CP033987.1_1743702_1745469_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_009739695.1_ASM973969v1	NZ_CP033987	Staphylococcus aureus strain P2D1C1 chromosome, complete genome	7	2265780-2265860	5	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|NZ_CP033987.1_2260654_2260885_-,NA|364aa|up_0|NZ_CP033987.1_2264671_2265763_+,NA|35aa|down_0|NZ_CP033987.1_2266195_2266300_-,NA|53aa|down_1|NZ_CP033987.1_2266979_2267138_+	NA|237aa|up_9|NZ_CP033987.1_2256265_2256976_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP033987.1_2257096_2257540_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP033987.1_2257739_2258153_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP033987.1_2258609_2259983_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP033987.1_2260654_2260885_-	NA	NA|313aa|up_4|NZ_CP033987.1_2260915_2261854_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP033987.1_2262289_2262955_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP033987.1_2263106_2263427_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP033987.1_2263428_2264406_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP033987.1_2264671_2265763_+	NA	NA|35aa|down_0|NZ_CP033987.1_2266195_2266300_-	NA	NA|53aa|down_1|NZ_CP033987.1_2266979_2267138_+	NA	NA|286aa|down_2|NZ_CP033987.1_2267795_2268653_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP033987.1_2268720_2269503_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP033987.1_2269734_2271540_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP033987.1_2272220_2273759_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP033987.1_2273793_2275926_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP033987.1_2275937_2276372_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP033987.1_2276371_2277478_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NZ_CP033987.1_2277796_2285242_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_009739695.1_ASM973969v1	NZ_CP033987	Staphylococcus aureus strain P2D1C1 chromosome, complete genome	8	2278101-2278186	6	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|364aa|up_9|NZ_CP033987.1_2264671_2265763_+,NA|35aa|up_8|NZ_CP033987.1_2266195_2266300_-,NA|53aa|up_7|NZ_CP033987.1_2266979_2267138_+,NA	NA|364aa|up_9|NZ_CP033987.1_2264671_2265763_+	NA	NA|35aa|up_8|NZ_CP033987.1_2266195_2266300_-	NA	NA|53aa|up_7|NZ_CP033987.1_2266979_2267138_+	NA	NA|286aa|up_6|NZ_CP033987.1_2267795_2268653_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP033987.1_2268720_2269503_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP033987.1_2269734_2271540_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP033987.1_2272220_2273759_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP033987.1_2273793_2275926_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP033987.1_2275937_2276372_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP033987.1_2276371_2277478_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP033987.1_2285519_2286875_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP033987.1_2286901_2287834_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP033987.1_2287835_2288645_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP033987.1_2288833_2289742_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP033987.1_2295982_2297047_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP033987.1_2297194_2298637_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP033987.1_2298959_2299433_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP033987.1_2299531_2300875_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP033987.1_2301051_2301735_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP033987.1_2301753_2302941_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_009739695.1_ASM973969v1	NZ_CP033987	Staphylococcus aureus strain P2D1C1 chromosome, complete genome	9	2386146-2386226	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	16	2386171-2386201|2386171-2386201|2386171-2386201|2386171-2386201|2386171-2386201|2386171-2386201|2386171-2386201|2386171-2386201|2386171-2386201|2386171-2386201|2386171-2386201|2386171-2386201|2386171-2386201|2386171-2386201|2386171-2386201|2386171-2386201	NZ_CP033987.1_872845-872875|NZ_CP033987.1_872901-872931|NZ_CP033987.1_113073-113103|NZ_CP033987.1_872957-872987|NZ_CP033987.1_909158-909188|NZ_CP033987.1_1075125-1075155|NZ_CP033987.1_1473768-1473798|NZ_CP033987.1_1473884-1473914|NZ_CP033987.1_2031181-2031211|NZ_CP033987.1_2375370-2375400|NZ_CP033987.1_2550832-2550862|NZ_CP033987.1_411315-411285|NZ_CP033987.1_693829-693799|NZ_CP033987.1_1177746-1177716|NZ_CP033987.1_1385365-1385335|NZ_CP033987.1_1716185-1716155	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NZ_CP033987.1_2376679_2376844_+,NA|106aa|up_8|NZ_CP033987.1_2377088_2377406_+,NA|84aa|up_5|NZ_CP033987.1_2382527_2382779_+,NA|62aa|up_0|NZ_CP033987.1_2385918_2386104_+,NA	NA|55aa|up_9|NZ_CP033987.1_2376679_2376844_+	NA	NA|106aa|up_8|NZ_CP033987.1_2377088_2377406_+	NA	NA|1056aa|up_7|NZ_CP033987.1_2377589_2380757_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP033987.1_2380873_2382139_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP033987.1_2382527_2382779_+	NA	NA|255aa|up_4|NZ_CP033987.1_2382770_2383535_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP033987.1_2383696_2384137_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP033987.1_2384129_2385341_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP033987.1_2385442_2385793_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP033987.1_2385918_2386104_+	NA	NA|341aa|down_0|NZ_CP033987.1_2386369_2387392_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP033987.1_2387411_2388011_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP033987.1_2388017_2388251_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP033987.1_2388256_2388703_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP033987.1_2388716_2389202_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP033987.1_2389198_2390458_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP033987.1_2390520_2391015_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP033987.1_2391016_2391523_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP033987.1_2391553_2392558_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP033987.1_2392727_2393333_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
