assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009739515.1_ASM973951v1	NZ_CP046535	Sphingomonas sp. LMO-1 chromosome, complete genome	1	732073-732156	1	CRISPRCasFinder	no		csa3,cas2,DEDDh,RT,DinG,cas3,casR	Orphan	CCGCATCGCCGCGCTGGAGGCGCG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas2,DEDDh,RT,DinG,cas3,casR	NA|542aa|up_0|NZ_CP046535.1_729541_731167_+,NA	NA|333aa|up_9|NZ_CP046535.1_718543_719542_-	pfam01032, FecCD, FecCD transport family	NA|298aa|up_8|NZ_CP046535.1_719538_720432_-	COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|671aa|up_7|NZ_CP046535.1_720431_722444_-	COG4206, BtuB, Outer membrane cobalamin receptor protein [Coenzyme metabolism]	NA|91aa|up_6|NZ_CP046535.1_723040_723313_-	COG0236, AcpP, Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|530aa|up_5|NZ_CP046535.1_723440_725030_+	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated	NA|426aa|up_4|NZ_CP046535.1_725026_726304_+	TIGR03099, dCO2ase_PEP1, pyridoxal-dependent decarboxylase, exosortase A system-associated	NA|205aa|up_3|NZ_CP046535.1_726444_727059_+	TIGR03027, pepcterm_export, putative polysaccharide export protein, PEP-CTERM sytem-associated	NA|515aa|up_2|NZ_CP046535.1_727099_728644_+	TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	NA|297aa|up_1|NZ_CP046535.1_728654_729545_+	TIGR03018, pepcterm_TyrKin, exopolysaccharide/PEP-CTERM locus tyrosine autokinase	NA|542aa|up_0|NZ_CP046535.1_729541_731167_+	NA	NA|281aa|down_0|NZ_CP046535.1_732278_733121_+	TIGR03006, pepcterm_polyde, polysaccharide deacetylase family protein, PEP-CTERM locus subfamily	NA|357aa|down_1|NZ_CP046535.1_733126_734197_+	TIGR03019, pepcterm_femAB, FemAB-related protein, PEP-CTERM system-associated	NA|408aa|down_2|NZ_CP046535.1_734196_735420_+	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated	NA|505aa|down_3|NZ_CP046535.1_735449_736964_+	TIGR03109, exosortase_1, exosortase A	NA|637aa|down_4|NZ_CP046535.1_736965_738876_+	TIGR03108, eps_aminotran_1, exosortase A system-associated amidotransferase 1	NA|228aa|down_5|NZ_CP046535.1_738953_739637_+	pfam10677, DUF2490, Protein of unknown function (DUF2490)	NA|150aa|down_6|NZ_CP046535.1_739692_740142_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|436aa|down_7|NZ_CP046535.1_740227_741535_-	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed	NA|263aa|down_8|NZ_CP046535.1_741665_742454_+	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|426aa|down_9|NZ_CP046535.1_742455_743733_-	pfam01566, Nramp, Natural resistance-associated macrophage protein
GCF_009739515.1_ASM973951v1	NZ_CP046535	Sphingomonas sp. LMO-1 chromosome, complete genome	2	1403270-1403405	1	PILER-CR	no		csa3,cas2,DEDDh,RT,DinG,cas3,casR	Orphan	CGGGGCGAACGGATCGTGCGGCGGC	25	1	1	1403309-1403327	NZ_CP046535.1_2687296-2687278	NA	2	2	Orphan	csa3,cas2,DEDDh,RT,DinG,cas3,casR	NA|171aa|up_5|NZ_CP046535.1_1393416_1393929_-,NA|201aa|down_0|NZ_CP046535.1_1404176_1404779_-	NA|212aa|up_9|NZ_CP046535.1_1389526_1390162_-	PRK00698, tmk, thymidylate kinase; Validated	NA|390aa|up_8|NZ_CP046535.1_1390158_1391328_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|302aa|up_7|NZ_CP046535.1_1391339_1392245_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|347aa|up_6|NZ_CP046535.1_1392228_1393269_-	pfam13406, SLT_2, Transglycosylase SLT domain	NA|171aa|up_5|NZ_CP046535.1_1393416_1393929_-	NA	NA|413aa|up_4|NZ_CP046535.1_1393993_1395232_-	cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms	NA|226aa|up_3|NZ_CP046535.1_1395319_1395997_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|1158aa|up_2|NZ_CP046535.1_1395993_1399467_-	TIGR03348, VI_IcmF, type VI secretion protein IcmF	NA|484aa|up_1|NZ_CP046535.1_1399594_1401046_-	PRK07033, PRK07033, DotU family type VI secretion system protein	NA|447aa|up_0|NZ_CP046535.1_1401042_1402383_-	pfam05936, T6SS_VasE, Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE	NA|201aa|down_0|NZ_CP046535.1_1404176_1404779_-	NA	NA|646aa|down_1|NZ_CP046535.1_1404778_1406716_-	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein	NA|157aa|down_2|NZ_CP046535.1_1406801_1407272_-	pfam05638, T6SS_HCP, Type VI secretion system effector, Hcp	NA|883aa|down_3|NZ_CP046535.1_1407371_1410020_-	TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family	NA|400aa|down_4|NZ_CP046535.1_1410228_1411428_-	pfam06996, T6SS_TssG, Type VI secretion, TssG	NA|605aa|down_5|NZ_CP046535.1_1411292_1413107_-	TIGR03359, VI_chp_6, type VI secretion protein, VC_A0110 family	NA|156aa|down_6|NZ_CP046535.1_1413132_1413600_-	TIGR03357, hypothetical_protein_Atu4338, type VI secretion system lysozyme-like protein	NA|486aa|down_7|NZ_CP046535.1_1413599_1415057_-	pfam05943, VipB, Type VI secretion protein, EvpB/VC_A0108, tail sheath	NA|498aa|down_8|NZ_CP046535.1_1415079_1416573_-	pfam05943, VipB, Type VI secretion protein, EvpB/VC_A0108, tail sheath	NA|171aa|down_9|NZ_CP046535.1_1416579_1417092_-	pfam05591, T6SS_VipA, Type VI secretion system, VipA, VC_A0107 or Hcp2
GCF_009739515.1_ASM973951v1	NZ_CP046535	Sphingomonas sp. LMO-1 chromosome, complete genome	3	1753219-1753326	2	CRISPRCasFinder	no		csa3,cas2,DEDDh,RT,DinG,cas3,casR	Orphan	CGGCTGGCGCGAGCTGCTGGACGC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas2,DEDDh,RT,DinG,cas3,casR	NA,NA|64aa|down_2|NZ_CP046535.1_1757658_1757850_+,NA|101aa|down_3|NZ_CP046535.1_1757951_1758254_+,NA|90aa|down_6|NZ_CP046535.1_1758974_1759244_-,NA|167aa|down_9|NZ_CP046535.1_1760960_1761461_+	NA|364aa|up_9|NZ_CP046535.1_1739337_1740429_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|198aa|up_8|NZ_CP046535.1_1740551_1741145_+	PRK05670, PRK05670, anthranilate synthase component II; Provisional	NA|332aa|up_7|NZ_CP046535.1_1741141_1742137_+	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|347aa|up_6|NZ_CP046535.1_1742331_1743372_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|359aa|up_5|NZ_CP046535.1_1743480_1744557_-	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]	NA|288aa|up_4|NZ_CP046535.1_1744553_1745417_-	PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed	NA|279aa|up_3|NZ_CP046535.1_1745478_1746315_-	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional	NA|224aa|up_2|NZ_CP046535.1_1746311_1746983_-	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p	NA|785aa|up_1|NZ_CP046535.1_1747087_1749442_+	cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases	NA|298aa|up_0|NZ_CP046535.1_1750678_1751572_+	pfam04321, RmlD_sub_bind, RmlD substrate binding domain	NA|258aa|down_0|NZ_CP046535.1_1756175_1756949_+	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|231aa|down_1|NZ_CP046535.1_1756950_1757643_+	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional	NA|64aa|down_2|NZ_CP046535.1_1757658_1757850_+	NA	NA|101aa|down_3|NZ_CP046535.1_1757951_1758254_+	NA	NA|151aa|down_4|NZ_CP046535.1_1758264_1758717_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|72aa|down_5|NZ_CP046535.1_1758769_1758985_-	pfam01679, Pmp3, Proteolipid membrane potential modulator	NA|90aa|down_6|NZ_CP046535.1_1758974_1759244_-	NA	NA|95aa|down_7|NZ_CP046535.1_1759396_1759681_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|329aa|down_8|NZ_CP046535.1_1759772_1760759_-	pfam13449, Phytase-like, Esterase-like activity of phytase	NA|167aa|down_9|NZ_CP046535.1_1760960_1761461_+	NA
GCF_009739515.1_ASM973951v1	NZ_CP046535	Sphingomonas sp. LMO-1 chromosome, complete genome	4	3633005-3633092	3	CRISPRCasFinder	no		csa3,cas2,DEDDh,RT,DinG,cas3,casR	Orphan	ATCGTCGCCGATCAGGGTGGCGGCG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas2,DEDDh,RT,DinG,cas3,casR	NA|117aa|up_7|NZ_CP046535.1_3625718_3626069_+,NA|170aa|down_7|NZ_CP046535.1_3642269_3642779_+,NA|115aa|down_8|NZ_CP046535.1_3642775_3643120_+	NA|461aa|up_9|NZ_CP046535.1_3623762_3625145_+	TIGR03097, PEP_O_lig_1, probable O-glycosylation ligase, exosortase A-associated	NA|167aa|up_8|NZ_CP046535.1_3625141_3625642_-	PLN02601, PLN02601, beta-carotene hydroxylase	NA|117aa|up_7|NZ_CP046535.1_3625718_3626069_+	NA	NA|400aa|up_6|NZ_CP046535.1_3626165_3627365_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|250aa|up_5|NZ_CP046535.1_3627516_3628266_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|310aa|up_4|NZ_CP046535.1_3628262_3629192_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|290aa|up_3|NZ_CP046535.1_3629248_3630118_-	pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	NA|355aa|up_2|NZ_CP046535.1_3630280_3631345_+	pfam10503, Esterase_phd, Esterase PHB depolymerase	NA|214aa|up_1|NZ_CP046535.1_3631345_3631987_-	PRK15401, PRK15401, DNA oxidative demethylase AlkB	NA|247aa|up_0|NZ_CP046535.1_3631976_3632717_-	pfam09859, Oxygenase-NA, Oxygenase, catalyzing oxidative methylation of damaged DNA	NA|225aa|down_0|NZ_CP046535.1_3633812_3634487_+	pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	NA|498aa|down_1|NZ_CP046535.1_3634500_3635994_+	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|131aa|down_2|NZ_CP046535.1_3636342_3636735_+	pfam10614, CsgF, Type VIII secretion system (T8SS), CsgF protein	NA|331aa|down_3|NZ_CP046535.1_3636734_3637727_+	PRK15184, PRK15184, curli production assembly/transport protein CsgG; Provisional	NA|643aa|down_4|NZ_CP046535.1_3637842_3639771_+	PRK10101, csgB, curlin minor subunit CsgB; Provisional	NA|500aa|down_5|NZ_CP046535.1_3639886_3641386_+	PRK10101, csgB, curlin minor subunit CsgB; Provisional	NA|196aa|down_6|NZ_CP046535.1_3641453_3642041_+	PRK10101, csgB, curlin minor subunit CsgB; Provisional	NA|170aa|down_7|NZ_CP046535.1_3642269_3642779_+	NA	NA|115aa|down_8|NZ_CP046535.1_3642775_3643120_+	NA	NA|308aa|down_9|NZ_CP046535.1_3643226_3644150_-	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs
GCF_009739515.1_ASM973951v1	NZ_CP046535	Sphingomonas sp. LMO-1 chromosome, complete genome	5	3639562-3639744	2	PILER-CR	no		csa3,cas2,DEDDh,RT,DinG,cas3,casR	Orphan	GAACAACGATGCGCTGGTGAACCAGGGCGGCACC	34	0	0	NA	NA	NA	2	2	Orphan	csa3,cas2,DEDDh,RT,DinG,cas3,casR	NA,NA|170aa|down_2|NZ_CP046535.1_3642269_3642779_+,NA|115aa|down_3|NZ_CP046535.1_3642775_3643120_+,NA|324aa|down_8|NZ_CP046535.1_3650248_3651220_-	NA|310aa|up_9|NZ_CP046535.1_3628262_3629192_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|290aa|up_8|NZ_CP046535.1_3629248_3630118_-	pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	NA|355aa|up_7|NZ_CP046535.1_3630280_3631345_+	pfam10503, Esterase_phd, Esterase PHB depolymerase	NA|214aa|up_6|NZ_CP046535.1_3631345_3631987_-	PRK15401, PRK15401, DNA oxidative demethylase AlkB	NA|247aa|up_5|NZ_CP046535.1_3631976_3632717_-	pfam09859, Oxygenase-NA, Oxygenase, catalyzing oxidative methylation of damaged DNA	NA|354aa|up_4|NZ_CP046535.1_3632665_3633727_-	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA|225aa|up_3|NZ_CP046535.1_3633812_3634487_+	pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	NA|498aa|up_2|NZ_CP046535.1_3634500_3635994_+	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|131aa|up_1|NZ_CP046535.1_3636342_3636735_+	pfam10614, CsgF, Type VIII secretion system (T8SS), CsgF protein	NA|331aa|up_0|NZ_CP046535.1_3636734_3637727_+	PRK15184, PRK15184, curli production assembly/transport protein CsgG; Provisional	NA|500aa|down_0|NZ_CP046535.1_3639886_3641386_+	PRK10101, csgB, curlin minor subunit CsgB; Provisional	NA|196aa|down_1|NZ_CP046535.1_3641453_3642041_+	PRK10101, csgB, curlin minor subunit CsgB; Provisional	NA|170aa|down_2|NZ_CP046535.1_3642269_3642779_+	NA	NA|115aa|down_3|NZ_CP046535.1_3642775_3643120_+	NA	NA|308aa|down_4|NZ_CP046535.1_3643226_3644150_-	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs	NA|784aa|down_5|NZ_CP046535.1_3644149_3646501_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|312aa|down_6|NZ_CP046535.1_3646719_3647655_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|767aa|down_7|NZ_CP046535.1_3647776_3650077_+	TIGR01701, Hypothetical_protein_Rv2900c/MT2968/Mb2924c	NA|324aa|down_8|NZ_CP046535.1_3650248_3651220_-	NA	NA|343aa|down_9|NZ_CP046535.1_3651242_3652271_-	cd05288, PGDH, Prostaglandin dehydrogenases
