assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009739485.1_ASM973948v1	NZ_CP022954	Lactobacillus paracasei subsp. paracasei strain IBB3423 chromosome, complete genome	1	1976238-1976359	1	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas1	Orphan	TGAGGTCCTTATGTGCAGGTTTCTGCGCCTGTTCGCGC	38	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas1	NA|146aa|up_4|NZ_CP022954.1_1967601_1968039_-,NA|125aa|down_7|NZ_CP022954.1_1987040_1987415_-,NA|141aa|down_8|NZ_CP022954.1_1987554_1987977_-	NA|155aa|up_9|NZ_CP022954.1_1963428_1963893_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|151aa|up_8|NZ_CP022954.1_1963885_1964338_-	PRK04351, PRK04351, SprT family protein	NA|251aa|up_7|NZ_CP022954.1_1964479_1965232_-	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|300aa|up_6|NZ_CP022954.1_1965224_1966124_-	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|332aa|up_5|NZ_CP022954.1_1966120_1967116_-	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|146aa|up_4|NZ_CP022954.1_1967601_1968039_-	NA	NA|887aa|up_3|NZ_CP022954.1_1968175_1970836_-	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|276aa|up_2|NZ_CP022954.1_1972560_1973388_-	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|398aa|up_1|NZ_CP022954.1_1973390_1974584_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|488aa|up_0|NZ_CP022954.1_1974587_1976051_-	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|234aa|down_0|NZ_CP022954.1_1976496_1977198_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|382aa|down_1|NZ_CP022954.1_1977222_1978368_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|266aa|down_2|NZ_CP022954.1_1978474_1979272_-	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]	NA|659aa|down_3|NZ_CP022954.1_1979284_1981261_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|276aa|down_4|NZ_CP022954.1_1981588_1982416_-	TIGR03729, acc_ester, putative phosphoesterase	NA|489aa|down_5|NZ_CP022954.1_1982477_1983944_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|773aa|down_6|NZ_CP022954.1_1984296_1986615_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|125aa|down_7|NZ_CP022954.1_1987040_1987415_-	NA	NA|141aa|down_8|NZ_CP022954.1_1987554_1987977_-	NA	NA|477aa|down_9|NZ_CP022954.1_1988539_1989970_+	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily
GCF_009739485.1_ASM973948v1	NZ_CP022954	Lactobacillus paracasei subsp. paracasei strain IBB3423 chromosome, complete genome	2	2382678-2384429	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1	csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas1	Type II-A	GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	36,36,36	1	1	2384298-2384327	NZ_CP022954.1_952064-952035	NA:NA:NA	26,26,25	26	TypeII-A	csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas1	NA|50aa|up_8|NZ_CP022954.1_2371449_2371599_-,NA|368aa|up_0|NZ_CP022954.1_2381293_2382397_-,NA|265aa|down_3|NZ_CP022954.1_2390760_2391555_-,NA|389aa|down_4|NZ_CP022954.1_2391555_2392722_-,NA|108aa|down_6|NZ_CP022954.1_2393513_2393837_+	NA|473aa|up_9|NZ_CP022954.1_2369895_2371314_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|50aa|up_8|NZ_CP022954.1_2371449_2371599_-	NA	NA|189aa|up_7|NZ_CP022954.1_2371604_2372171_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|483aa|up_6|NZ_CP022954.1_2372297_2373746_-	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|613aa|up_5|NZ_CP022954.1_2373916_2375755_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|286aa|up_4|NZ_CP022954.1_2376206_2377064_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|544aa|up_3|NZ_CP022954.1_2377201_2378833_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|564aa|up_2|NZ_CP022954.1_2378829_2380521_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|142aa|up_1|NZ_CP022954.1_2380717_2381143_-	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown]	NA|368aa|up_0|NZ_CP022954.1_2381293_2382397_-	NA	csn2|226aa|down_0|NZ_CP022954.1_2384453_2385131_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NZ_CP022954.1_2385127_2385433_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|NZ_CP022954.1_2385410_2386316_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	NA|265aa|down_3|NZ_CP022954.1_2390760_2391555_-	NA	NA|389aa|down_4|NZ_CP022954.1_2391555_2392722_-	NA	NA|123aa|down_5|NZ_CP022954.1_2392951_2393320_+	pfam06486, DUF1093, Protein of unknown function (DUF1093)	NA|108aa|down_6|NZ_CP022954.1_2393513_2393837_+	NA	NA|576aa|down_7|NZ_CP022954.1_2393908_2395636_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|581aa|down_8|NZ_CP022954.1_2395616_2397359_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|338aa|down_9|NZ_CP022954.1_2397355_2398369_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II
GCF_009739485.1_ASM973948v1	NZ_CP022955	Lactobacillus paracasei subsp. paracasei strain IBB3423 plasmid pLCAKO.1, complete sequence	1	3041-3165	1	CRISPRCasFinder	no			Orphan	CCGTCTCTTCAGGGTCAGATTACCGCGATCAGTCA	35	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas1	NA|103aa|up_2|NZ_CP022955.1_1405_1714_+,NA|61aa|up_0|NZ_CP022955.1_2189_2372_+,NA|84aa|down_0|NZ_CP022955.1_4386_4638_+,NA|225aa|down_1|NZ_CP022955.1_4743_5418_+,NA|56aa|down_2|NZ_CP022955.1_5503_5671_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|330aa|up_3|NZ_CP022955.1_129_1119_+	pfam02486, Rep_trans, Replication initiation factor	NA|103aa|up_2|NZ_CP022955.1_1405_1714_+	NA	NA|147aa|up_1|NZ_CP022955.1_1731_2172_+	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|61aa|up_0|NZ_CP022955.1_2189_2372_+	NA	NA|84aa|down_0|NZ_CP022955.1_4386_4638_+	NA	NA|225aa|down_1|NZ_CP022955.1_4743_5418_+	NA	NA|56aa|down_2|NZ_CP022955.1_5503_5671_+	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
