assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009738535.1_ASM973853v1	NZ_CP046528	Lactobacillus acetotolerans strain CN247 chromosome, complete genome	1	208827-209478	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas9,cas1,cas2,csn2,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,csa3	Type II-B,Type II-A,Type II-C	GTTTTAGATGTCTGCTAAAACGATGAGGTTTAAAGC,GTTTTAGATGTCTGCTAAAACGATGAGGTTTAAAGC,GTTTTAGATGTCTGNTAAAACGATGAGGTTTAAAGC	36,36,36	0	0	NA	NA	NA:NA:NA	7,9,9	9	TypeII-B,TypeII-A,TypeII-C	cas9,cas1,cas2,csn2,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,csa3	NA|48aa|up_4|NZ_CP046528.1_204380_204524_+,NA|91aa|up_2|NZ_CP046528.1_205978_206251_+,NA	NA|180aa|up_9|NZ_CP046528.1_197956_198496_+	TIGR03263, Guanylate_kinase, guanylate kinase	NA|245aa|up_8|NZ_CP046528.1_198686_199421_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|305aa|up_7|NZ_CP046528.1_199604_200519_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|364aa|up_6|NZ_CP046528.1_201789_202881_-	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins	NA|428aa|up_5|NZ_CP046528.1_202897_204181_-	TIGR03156, GTP_HflX, GTP-binding protein HflX	NA|48aa|up_4|NZ_CP046528.1_204380_204524_+	NA	NA|393aa|up_3|NZ_CP046528.1_204572_205751_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|91aa|up_2|NZ_CP046528.1_205978_206251_+	NA	NA|344aa|up_1|NZ_CP046528.1_206462_207494_-	pfam01757, Acyl_transf_3, Acyltransferase family	NA|303aa|up_0|NZ_CP046528.1_207688_208597_+	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases	cas9|1403aa|down_0|NZ_CP046528.1_209622_213831_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|303aa|down_1|NZ_CP046528.1_214057_214966_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|down_2|NZ_CP046528.1_214943_215249_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|223aa|down_3|NZ_CP046528.1_215245_215914_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|424aa|down_4|NZ_CP046528.1_218326_219598_+	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|600aa|down_5|NZ_CP046528.1_220498_222298_+	pfam02687, FtsX, FtsX-like permease family	NA|216aa|down_6|NZ_CP046528.1_222347_222995_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|231aa|down_7|NZ_CP046528.1_223022_223715_-	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily	NA|765aa|down_8|NZ_CP046528.1_223866_226161_+	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only]	NA|216aa|down_9|NZ_CP046528.1_226595_227243_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
GCF_009738535.1_ASM973853v1	NZ_CP046528	Lactobacillus acetotolerans strain CN247 chromosome, complete genome	2	215947-217038	2,2,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	cas9,cas1,cas2,csn2,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,csa3	Type II-B,Type II-A,Type II-C	GTTTTAGATGTCTGTTAGATCAATGAGGTTTAGAAC,GTTTTAGATGTCTGTTAGATCAATGAGGTTTAGAAC,GTTTTAGATGTCTGTTAGATCAATGAGGTTTAGAAC,GTTTTAGATGTCTGTTAGATCAATGAGGTTTAGAAC	36,36,36,36	0	0	NA	NA	NA:NA:NA:NA	14,16,16,14	16	TypeII-B,TypeII-A,TypeII-C	cas9,cas1,cas2,csn2,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,csa3	NA|48aa|up_8|NZ_CP046528.1_204380_204524_+,NA|91aa|up_6|NZ_CP046528.1_205978_206251_+,NA	NA|428aa|up_9|NZ_CP046528.1_202897_204181_-	TIGR03156, GTP_HflX, GTP-binding protein HflX	NA|48aa|up_8|NZ_CP046528.1_204380_204524_+	NA	NA|393aa|up_7|NZ_CP046528.1_204572_205751_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|91aa|up_6|NZ_CP046528.1_205978_206251_+	NA	NA|344aa|up_5|NZ_CP046528.1_206462_207494_-	pfam01757, Acyl_transf_3, Acyltransferase family	NA|303aa|up_4|NZ_CP046528.1_207688_208597_+	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases	cas9|1403aa|up_3|NZ_CP046528.1_209622_213831_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|303aa|up_2|NZ_CP046528.1_214057_214966_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_1|NZ_CP046528.1_214943_215249_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|223aa|up_0|NZ_CP046528.1_215245_215914_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|424aa|down_0|NZ_CP046528.1_218326_219598_+	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|600aa|down_1|NZ_CP046528.1_220498_222298_+	pfam02687, FtsX, FtsX-like permease family	NA|216aa|down_2|NZ_CP046528.1_222347_222995_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|231aa|down_3|NZ_CP046528.1_223022_223715_-	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily	NA|765aa|down_4|NZ_CP046528.1_223866_226161_+	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only]	NA|216aa|down_5|NZ_CP046528.1_226595_227243_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|207aa|down_6|NZ_CP046528.1_227254_227875_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|274aa|down_7|NZ_CP046528.1_227877_228699_+	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|137aa|down_8|NZ_CP046528.1_228743_229154_+	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|190aa|down_9|NZ_CP046528.1_229167_229737_-	cd01838, Isoamyl_acetate_hydrolase_like, Isoamyl-acetate hydrolyzing esterase-like proteins
GCF_009738535.1_ASM973853v1	NZ_CP046528	Lactobacillus acetotolerans strain CN247 chromosome, complete genome	3	391517-391730	4,3,3	PILER-CR,CRT,CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh	cas9,cas1,cas2,csn2,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,csa3	Type I-E	AGTATTCCCCATGCATATGGGGGTGATCC,AGTATTCCCCATGCATATGGGGGTGATCC,GTATTCCCCATGCATATGGGGGTGATCC	29,29,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	2,3,3	3	TypeI-E	cas9,cas1,cas2,csn2,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,csa3	NA|181aa|up_8|NZ_CP046528.1_380703_381246_+,NA|67aa|down_8|NZ_CP046528.1_402110_402311_+	NA|631aa|up_9|NZ_CP046528.1_378809_380702_+	cd17919, DEXHc_Snf, DEXH/Q-box helicase domain of DEAD-like helicase Snf family proteins	NA|181aa|up_8|NZ_CP046528.1_380703_381246_+	NA	NA|308aa|up_7|NZ_CP046528.1_381229_382153_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|66aa|up_6|NZ_CP046528.1_383789_383987_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|67aa|up_5|NZ_CP046528.1_384829_385030_-	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|140aa|up_4|NZ_CP046528.1_386581_387001_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|244aa|up_3|NZ_CP046528.1_386984_387716_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|472aa|up_2|NZ_CP046528.1_388268_389684_+	pfam07929, PRiA4_ORF3, Plasmid pRiA4b ORF-3-like protein	NA|85aa|up_1|NZ_CP046528.1_390431_390686_+	pfam15937, PrlF_antitoxin, prlF antitoxin for toxin YhaV_toxin	NA|117aa|up_0|NZ_CP046528.1_390688_391039_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	cas3|908aa|down_0|NZ_CP046528.1_391915_394639_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|582aa|down_1|NZ_CP046528.1_394613_396359_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|199aa|down_2|NZ_CP046528.1_396371_396968_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|362aa|down_3|NZ_CP046528.1_396970_398056_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|232aa|down_4|NZ_CP046528.1_398036_398732_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|210aa|down_5|NZ_CP046528.1_398746_399376_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|317aa|down_6|NZ_CP046528.1_399378_400329_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	DEDDh|292aa|down_7|NZ_CP046528.1_400325_401201_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|67aa|down_8|NZ_CP046528.1_402110_402311_+	NA	NA|308aa|down_9|NZ_CP046528.1_402294_403218_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
GCF_009738535.1_ASM973853v1	NZ_CP046528	Lactobacillus acetotolerans strain CN247 chromosome, complete genome	4	401231-401990	5,4,4,6	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh	cas9,cas1,cas2,csn2,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,csa3	Type I-E	GTATTCCCCATGTATGTGGGGGTGATCC,GTATTCCCCATGTATGTGGGGGTGATCC,GTATTCCCCATGTATGTGGGGGTGATCCNNN,GTATTCCCCATGTATGTGGGGGTGATCC	28,28,31,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	9,12,12,9	12	TypeI-E	cas9,cas1,cas2,csn2,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,csa3	NA,NA|67aa|down_0|NZ_CP046528.1_402110_402311_+,NA|98aa|down_2|NZ_CP046528.1_403424_403718_+,NA|68aa|down_4|NZ_CP046528.1_405149_405353_+,NA|194aa|down_7|NZ_CP046528.1_408238_408820_+	NA|85aa|up_9|NZ_CP046528.1_390431_390686_+	pfam15937, PrlF_antitoxin, prlF antitoxin for toxin YhaV_toxin	NA|117aa|up_8|NZ_CP046528.1_390688_391039_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	cas3|908aa|up_7|NZ_CP046528.1_391915_394639_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|582aa|up_6|NZ_CP046528.1_394613_396359_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|199aa|up_5|NZ_CP046528.1_396371_396968_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|362aa|up_4|NZ_CP046528.1_396970_398056_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|232aa|up_3|NZ_CP046528.1_398036_398732_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|210aa|up_2|NZ_CP046528.1_398746_399376_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|317aa|up_1|NZ_CP046528.1_399378_400329_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	DEDDh|292aa|up_0|NZ_CP046528.1_400325_401201_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|67aa|down_0|NZ_CP046528.1_402110_402311_+	NA	NA|308aa|down_1|NZ_CP046528.1_402294_403218_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|98aa|down_2|NZ_CP046528.1_403424_403718_+	NA	NA|298aa|down_3|NZ_CP046528.1_404216_405110_+	pfam04471, Mrr_cat, Restriction endonuclease	NA|68aa|down_4|NZ_CP046528.1_405149_405353_+	NA	NA|386aa|down_5|NZ_CP046528.1_405398_406556_-	COG0281, SfcA, Malic enzyme [Energy production and conversion]	NA|425aa|down_6|NZ_CP046528.1_406783_408058_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|194aa|down_7|NZ_CP046528.1_408238_408820_+	NA	NA|128aa|down_8|NZ_CP046528.1_408938_409322_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|89aa|down_9|NZ_CP046528.1_410341_410608_+	pfam14253, AbiH, Bacteriophage abortive infection AbiH
GCF_009738535.1_ASM973853v1	NZ_CP046528	Lactobacillus acetotolerans strain CN247 chromosome, complete genome	5	965746-965847	5	CRISPRCasFinder	no	DEDDh	cas9,cas1,cas2,csn2,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,csa3	Unclear	CGACCATGACACTTATCACAGGTA	24	0	0	NA	NA	NA	1	1	Orphan	cas9,cas1,cas2,csn2,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,csa3	NA|334aa|up_8|NZ_CP046528.1_952386_953388_-,NA	NA|469aa|up_9|NZ_CP046528.1_950876_952283_-	pfam06782, UPF0236, Uncharacterized protein family (UPF0236)	NA|334aa|up_8|NZ_CP046528.1_952386_953388_-	NA	NA|193aa|up_7|NZ_CP046528.1_953537_954116_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|429aa|up_6|NZ_CP046528.1_954266_955553_+	PRK00077, eno, enolase; Provisional	NA|758aa|up_5|NZ_CP046528.1_955702_957976_+	cd02076, P-type_ATPase_H, plant and fungal plasma membrane H(+)-ATPases, and related bacterial and archaeal putative H(+)-ATPases	NA|495aa|up_4|NZ_CP046528.1_958079_959564_+	TIGR04265, bac_cardiolipin, cardiolipin synthase	NA|174aa|up_3|NZ_CP046528.1_959619_960141_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|176aa|up_2|NZ_CP046528.1_960293_960821_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|757aa|up_1|NZ_CP046528.1_960931_963202_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|613aa|up_0|NZ_CP046528.1_963244_965083_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|625aa|down_0|NZ_CP046528.1_966434_968309_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|195aa|down_1|NZ_CP046528.1_968326_968911_-	PRK14162, PRK14162, heat shock protein GrpE; Provisional	NA|350aa|down_2|NZ_CP046528.1_968923_969973_-	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|457aa|down_3|NZ_CP046528.1_970199_971570_+	pfam00665, rve, Integrase core domain	NA|312aa|down_4|NZ_CP046528.1_971722_972658_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|298aa|down_5|NZ_CP046528.1_972678_973572_-	PRK02484, truB, tRNA pseudouridine synthase B; Provisional	NA|122aa|down_6|NZ_CP046528.1_973619_973985_-	PRK13818, PRK13818, ribosome-binding factor A; Provisional	NA|878aa|down_7|NZ_CP046528.1_974003_976637_-	PRK05306, infB, translation initiation factor IF-2; Validated	NA|104aa|down_8|NZ_CP046528.1_976641_976953_-	PRK07283, PRK07283, YlxQ-related RNA-binding protein	NA|92aa|down_9|NZ_CP046528.1_976955_977231_-	pfam04296, DUF448, Protein of unknown function (DUF448)
