assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009738515.1_ASM973851v1	NZ_CP046514	Bifidobacterium longum strain JSRL02 chromosome, complete genome	1	289664-289749	1	CRISPRCasFinder	no		RT,cas3,WYL,DEDDh,cas2,cas1,csb3,csb2gr5,cas7,casR	Orphan	GACAGCTCCCGCCAGCGGGAGCACTT	26	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,WYL,DEDDh,cas2,cas1,csb3,csb2gr5,cas7,casR	NA|186aa|up_5|NZ_CP046514.1_282713_283271_+,NA|323aa|up_3|NZ_CP046514.1_284647_285616_-,NA|695aa|down_6|NZ_CP046514.1_298205_300290_+	NA|245aa|up_9|NZ_CP046514.1_277258_277993_+	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|903aa|up_8|NZ_CP046514.1_278076_280785_-	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|94aa|up_7|NZ_CP046514.1_280896_281178_+	COG1937, COG1937, Uncharacterized protein conserved in bacteria [Function unknown]	NA|468aa|up_6|NZ_CP046514.1_281241_282645_+	pfam02646, RmuC, RmuC family	NA|186aa|up_5|NZ_CP046514.1_282713_283271_+	NA	NA|283aa|up_4|NZ_CP046514.1_283364_284213_+	cd18096, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU	NA|323aa|up_3|NZ_CP046514.1_284647_285616_-	NA	NA|100aa|up_2|NZ_CP046514.1_286198_286498_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|514aa|up_1|NZ_CP046514.1_286501_288043_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|500aa|up_0|NZ_CP046514.1_288068_289568_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|346aa|down_0|NZ_CP046514.1_289890_290928_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|105aa|down_1|NZ_CP046514.1_290938_291253_+	pfam10611, DUF2469, Protein of unknown function (DUF2469)	NA|607aa|down_2|NZ_CP046514.1_291459_293280_+	cd07061, HP_HAP_like, Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction	NA|538aa|down_3|NZ_CP046514.1_293498_295112_+	PRK07208, PRK07208, hypothetical protein; Provisional	NA|690aa|down_4|NZ_CP046514.1_295317_297387_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|130aa|down_5|NZ_CP046514.1_297694_298084_+	PRK09239, PRK09239, chorismate mutase; Provisional	NA|695aa|down_6|NZ_CP046514.1_298205_300290_+	NA	NA|947aa|down_7|NZ_CP046514.1_300515_303356_-	NF000540, alt_ValS, valine--tRNA ligase	NA|489aa|down_8|NZ_CP046514.1_303394_304861_-	cd08494, PBP2_NikA_DppA_OppA_like_6, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|229aa|down_9|NZ_CP046514.1_304982_305669_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
GCF_009738515.1_ASM973851v1	NZ_CP046514	Bifidobacterium longum strain JSRL02 chromosome, complete genome	2	330735-330813	2	CRISPRCasFinder	no	RT	RT,cas3,WYL,DEDDh,cas2,cas1,csb3,csb2gr5,cas7,casR	Unclear	CGCCGGGTGGCTTTTTCAATGCCCG	25	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,WYL,DEDDh,cas2,cas1,csb3,csb2gr5,cas7,casR	NA|72aa|up_8|NZ_CP046514.1_323950_324166_+,NA|62aa|up_7|NZ_CP046514.1_324177_324363_+,NA|274aa|up_6|NZ_CP046514.1_324528_325350_+,NA|63aa|up_4|NZ_CP046514.1_326235_326424_+,NA|401aa|up_1|NZ_CP046514.1_329290_330493_+,NA|87aa|up_0|NZ_CP046514.1_330450_330711_+,NA|178aa|down_0|NZ_CP046514.1_330842_331376_+,NA|105aa|down_2|NZ_CP046514.1_332326_332641_+,NA|112aa|down_4|NZ_CP046514.1_333101_333437_+,NA|92aa|down_5|NZ_CP046514.1_333448_333724_+,NA|122aa|down_6|NZ_CP046514.1_333720_334086_+,NA|196aa|down_7|NZ_CP046514.1_334117_334705_+,NA|107aa|down_8|NZ_CP046514.1_334759_335080_+	NA|69aa|up_9|NZ_CP046514.1_323722_323929_+	pfam02467, Whib, Transcription factor WhiB	NA|72aa|up_8|NZ_CP046514.1_323950_324166_+	NA	NA|62aa|up_7|NZ_CP046514.1_324177_324363_+	NA	NA|274aa|up_6|NZ_CP046514.1_324528_325350_+	NA	NA|98aa|up_5|NZ_CP046514.1_325752_326046_+	pfam14279, HNH_5, HNH endonuclease	NA|63aa|up_4|NZ_CP046514.1_326235_326424_+	NA	NA|478aa|up_3|NZ_CP046514.1_326407_327841_+	TIGR01547, Uncharacterized_protein_YqaT, phage terminase, large subunit, PBSX family	NA|500aa|up_2|NZ_CP046514.1_327840_329340_+	pfam05133, Phage_prot_Gp6, Phage portal protein, SPP1 Gp6-like	NA|401aa|up_1|NZ_CP046514.1_329290_330493_+	NA	NA|87aa|up_0|NZ_CP046514.1_330450_330711_+	NA	NA|178aa|down_0|NZ_CP046514.1_330842_331376_+	NA	NA|302aa|down_1|NZ_CP046514.1_331421_332327_+	pfam05065, Phage_capsid, Phage capsid family	NA|105aa|down_2|NZ_CP046514.1_332326_332641_+	NA	NA|151aa|down_3|NZ_CP046514.1_332652_333105_+	pfam09355, Phage_Gp19, Phage protein Gp19/Gp15/Gp42	NA|112aa|down_4|NZ_CP046514.1_333101_333437_+	NA	NA|92aa|down_5|NZ_CP046514.1_333448_333724_+	NA	NA|122aa|down_6|NZ_CP046514.1_333720_334086_+	NA	NA|196aa|down_7|NZ_CP046514.1_334117_334705_+	NA	NA|107aa|down_8|NZ_CP046514.1_334759_335080_+	NA	NA|131aa|down_9|NZ_CP046514.1_335091_335484_+	pfam17318, DUF5361, Family of unknown function (DUF5361)
GCF_009738515.1_ASM973851v1	NZ_CP046514	Bifidobacterium longum strain JSRL02 chromosome, complete genome	3	337721-337895	1	PILER-CR	no	RT	RT,cas3,WYL,DEDDh,cas2,cas1,csb3,csb2gr5,cas7,casR	Unclear	AACGTCCTGAACGCCATCAGCGGCGTATGGACGAGCGTATGGA	43	0	0	NA	NA	NA	2	2	Orphan	RT,cas3,WYL,DEDDh,cas2,cas1,csb3,csb2gr5,cas7,casR	NA|178aa|up_9|NZ_CP046514.1_330842_331376_+,NA|105aa|up_7|NZ_CP046514.1_332326_332641_+,NA|112aa|up_5|NZ_CP046514.1_333101_333437_+,NA|92aa|up_4|NZ_CP046514.1_333448_333724_+,NA|122aa|up_3|NZ_CP046514.1_333720_334086_+,NA|196aa|up_2|NZ_CP046514.1_334117_334705_+,NA|107aa|up_1|NZ_CP046514.1_334759_335080_+,NA|260aa|down_0|NZ_CP046514.1_338573_339353_+,NA|199aa|down_2|NZ_CP046514.1_343102_343699_+,NA|527aa|down_4|NZ_CP046514.1_344591_346172_+,NA|77aa|down_6|NZ_CP046514.1_347753_347984_+,NA|106aa|down_7|NZ_CP046514.1_348111_348429_+	NA|178aa|up_9|NZ_CP046514.1_330842_331376_+	NA	NA|302aa|up_8|NZ_CP046514.1_331421_332327_+	pfam05065, Phage_capsid, Phage capsid family	NA|105aa|up_7|NZ_CP046514.1_332326_332641_+	NA	NA|151aa|up_6|NZ_CP046514.1_332652_333105_+	pfam09355, Phage_Gp19, Phage protein Gp19/Gp15/Gp42	NA|112aa|up_5|NZ_CP046514.1_333101_333437_+	NA	NA|92aa|up_4|NZ_CP046514.1_333448_333724_+	NA	NA|122aa|up_3|NZ_CP046514.1_333720_334086_+	NA	NA|196aa|up_2|NZ_CP046514.1_334117_334705_+	NA	NA|107aa|up_1|NZ_CP046514.1_334759_335080_+	NA	NA|131aa|up_0|NZ_CP046514.1_335091_335484_+	pfam17318, DUF5361, Family of unknown function (DUF5361)	NA|260aa|down_0|NZ_CP046514.1_338573_339353_+	NA	NA|1240aa|down_1|NZ_CP046514.1_339373_343093_+	pfam06605, Prophage_tail, Prophage endopeptidase tail	NA|199aa|down_2|NZ_CP046514.1_343102_343699_+	NA	NA|241aa|down_3|NZ_CP046514.1_343852_344575_+	pfam10651, DUF2479, Domain of unknown function (DUF2479)	NA|527aa|down_4|NZ_CP046514.1_344591_346172_+	NA	RT|412aa|down_5|NZ_CP046514.1_346587_347823_+	cd01651, RT_G2_intron, RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin	NA|77aa|down_6|NZ_CP046514.1_347753_347984_+	NA	NA|106aa|down_7|NZ_CP046514.1_348111_348429_+	NA	NA|411aa|down_8|NZ_CP046514.1_348492_349725_+	cd06417, GH25_LysA-like, LysA is a cell wall endolysin produced by Lactobacillus fermentum, which degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues	NA|88aa|down_9|NZ_CP046514.1_349809_350073_+	pfam16938, Phage_holin_Dp1, Putative phage holin Dp-1
GCF_009738515.1_ASM973851v1	NZ_CP046514	Bifidobacterium longum strain JSRL02 chromosome, complete genome	4	1257299-1257375	3	CRISPRCasFinder	no		RT,cas3,WYL,DEDDh,cas2,cas1,csb3,csb2gr5,cas7,casR	Orphan	TCCATGTGGATGTCCATGGACATATCCAT	29	1	1	1257328-1257346	NZ_CP046514.1_1257376-1257394	NA	1	1	Orphan	RT,cas3,WYL,DEDDh,cas2,cas1,csb3,csb2gr5,cas7,casR	NA|345aa|up_9|NZ_CP046514.1_1244691_1245726_+,NA|214aa|up_8|NZ_CP046514.1_1245827_1246469_+,NA|376aa|up_5|NZ_CP046514.1_1249297_1250425_+,NA|98aa|down_2|NZ_CP046514.1_1260276_1260570_-,NA|126aa|down_3|NZ_CP046514.1_1260775_1261153_+,NA|606aa|down_6|NZ_CP046514.1_1265184_1267002_+,NA|344aa|down_7|NZ_CP046514.1_1267041_1268073_+,NA|200aa|down_9|NZ_CP046514.1_1269165_1269765_+	NA|345aa|up_9|NZ_CP046514.1_1244691_1245726_+	NA	NA|214aa|up_8|NZ_CP046514.1_1245827_1246469_+	NA	NA|603aa|up_7|NZ_CP046514.1_1246549_1248358_+	pfam12696, TraG-D_C, TraM recognition site of TraD and TraG	NA|318aa|up_6|NZ_CP046514.1_1248357_1249311_+	pfam16259, DUF4913, Domain of unknown function (DUF4913)	NA|376aa|up_5|NZ_CP046514.1_1249297_1250425_+	NA	NA|492aa|up_4|NZ_CP046514.1_1250646_1252122_+	cd17808, HipA_Ec_like, type II toxin-antitoxin sytem toxin HipA from Escherichia coli and similar proteins	NA|261aa|up_3|NZ_CP046514.1_1253566_1254349_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|324aa|up_2|NZ_CP046514.1_1254477_1255449_+	PRK10458, PRK10458, DNA cytosine methylase; Provisional	NA|423aa|up_1|NZ_CP046514.1_1255494_1256763_+	pfam09019, EcoRII-C, EcoRII C terminal	NA|148aa|up_0|NZ_CP046514.1_1256724_1257168_-	pfam05713, MobC, Bacterial mobilisation protein (MobC)	NA|144aa|down_0|NZ_CP046514.1_1257504_1257936_-	pfam12651, RHH_3, Ribbon-helix-helix domain	NA|720aa|down_1|NZ_CP046514.1_1258010_1260170_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|98aa|down_2|NZ_CP046514.1_1260276_1260570_-	NA	NA|126aa|down_3|NZ_CP046514.1_1260775_1261153_+	NA	NA|487aa|down_4|NZ_CP046514.1_1261730_1263191_+	PRK08581, PRK08581, amidase domain-containing protein	NA|362aa|down_5|NZ_CP046514.1_1264083_1265169_+	pfam07275, ArdA, Antirestriction protein (ArdA)	NA|606aa|down_6|NZ_CP046514.1_1265184_1267002_+	NA	NA|344aa|down_7|NZ_CP046514.1_1267041_1268073_+	NA	NA|302aa|down_8|NZ_CP046514.1_1268234_1269140_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|200aa|down_9|NZ_CP046514.1_1269165_1269765_+	NA
GCF_009738515.1_ASM973851v1	NZ_CP046514	Bifidobacterium longum strain JSRL02 chromosome, complete genome	5	1401090-1401170	4	CRISPRCasFinder	no		RT,cas3,WYL,DEDDh,cas2,cas1,csb3,csb2gr5,cas7,casR	Orphan	CGCACAGTGAAACCGTCTCATAT	23	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,WYL,DEDDh,cas2,cas1,csb3,csb2gr5,cas7,casR	NA|107aa|up_5|NZ_CP046514.1_1391452_1391773_-,NA|327aa|down_0|NZ_CP046514.1_1401941_1402922_+	NA|170aa|up_9|NZ_CP046514.1_1387327_1387837_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|353aa|up_8|NZ_CP046514.1_1387876_1388935_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|319aa|up_7|NZ_CP046514.1_1389159_1390116_+	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR	NA|315aa|up_6|NZ_CP046514.1_1390241_1391186_+	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR	NA|107aa|up_5|NZ_CP046514.1_1391452_1391773_-	NA	NA|270aa|up_4|NZ_CP046514.1_1391772_1392582_-	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional	NA|518aa|up_3|NZ_CP046514.1_1392699_1394253_+	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional	NA|332aa|up_2|NZ_CP046514.1_1394374_1395370_+	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain	NA|1226aa|up_1|NZ_CP046514.1_1395488_1399166_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|530aa|up_0|NZ_CP046514.1_1399226_1400816_-	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|327aa|down_0|NZ_CP046514.1_1401941_1402922_+	NA	NA|532aa|down_1|NZ_CP046514.1_1403225_1404821_+	cd01087, Prolidase, Prolidase	NA|174aa|down_2|NZ_CP046514.1_1404869_1405391_+	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|570aa|down_3|NZ_CP046514.1_1405440_1407150_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|390aa|down_4|NZ_CP046514.1_1407153_1408323_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|364aa|down_5|NZ_CP046514.1_1408324_1409416_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|545aa|down_6|NZ_CP046514.1_1409581_1411216_-	cd08519, PBP2_NikA_DppA_OppA_like_20, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|428aa|down_7|NZ_CP046514.1_1411495_1412779_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|271aa|down_8|NZ_CP046514.1_1412834_1413647_-	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional	NA|375aa|down_9|NZ_CP046514.1_1413984_1415109_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
GCF_009738515.1_ASM973851v1	NZ_CP046514	Bifidobacterium longum strain JSRL02 chromosome, complete genome	6	1663110-1667617	1,5,2	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,csb3,cas3,csb2gr5,cas7	RT,cas3,WYL,DEDDh,cas2,cas1,csb3,csb2gr5,cas7,casR	Unclear	NTCCTCAATGAAGTGCATACGTTTTGACGTATGCAAG,TCCTCAATGAAGTGCATACGTTTTGACGTATGCAAG,TCCTCAATGAAGTGCATACGTTTTGACGTATGCAAG	37,36,36	0	0	NA	NA	NA:NA:NA	62,61,61	62	Unclear	RT,cas3,WYL,DEDDh,cas2,cas1,csb3,csb2gr5,cas7,casR	NA,NA|36aa|down_0|NZ_CP046514.1_1667892_1668000_+	NA|556aa|up_9|NZ_CP046514.1_1650088_1651756_-	TIGR03688, pupylate_PafA2, proteasome accessory factor PafA2	NA|522aa|up_8|NZ_CP046514.1_1651777_1653343_-	TIGR03689, pup_AAA, proteasome ATPase	NA|233aa|up_7|NZ_CP046514.1_1653403_1654102_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|251aa|up_6|NZ_CP046514.1_1654122_1654875_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|771aa|up_5|NZ_CP046514.1_1654914_1657227_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_4|NZ_CP046514.1_1657285_1657990_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|329aa|up_3|NZ_CP046514.1_1658013_1659000_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_2|NZ_CP046514.1_1659090_1660953_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_1|NZ_CP046514.1_1661154_1661439_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_0|NZ_CP046514.1_1661716_1662937_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|36aa|down_0|NZ_CP046514.1_1667892_1668000_+	NA	cas2|99aa|down_1|NZ_CP046514.1_1668126_1668423_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|531aa|down_2|NZ_CP046514.1_1668472_1670065_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	csb3|378aa|down_3|NZ_CP046514.1_1670054_1671188_-	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas3|1070aa|down_4|NZ_CP046514.1_1671191_1674401_-	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb2gr5|581aa|down_5|NZ_CP046514.1_1674397_1676140_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas7|402aa|down_6|NZ_CP046514.1_1676155_1677361_-	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	NA|1104aa|down_7|NZ_CP046514.1_1677991_1681303_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|404aa|down_8|NZ_CP046514.1_1681894_1683106_+	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|221aa|down_9|NZ_CP046514.1_1683111_1683774_+	smart01038, Bgal_small_N, Beta galactosidase small chain
GCF_009738515.1_ASM973851v1	NZ_CP046514	Bifidobacterium longum strain JSRL02 chromosome, complete genome	7	1871033-1871118	6	CRISPRCasFinder	no		RT,cas3,WYL,DEDDh,cas2,cas1,csb3,csb2gr5,cas7,casR	Orphan	GGCCCTGAGCGTGCGGGCGCGGA	23	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,WYL,DEDDh,cas2,cas1,csb3,csb2gr5,cas7,casR	NA|116aa|up_8|NZ_CP046514.1_1860803_1861151_+,NA|30aa|up_5|NZ_CP046514.1_1863121_1863211_-,NA|193aa|up_4|NZ_CP046514.1_1863402_1863981_-,NA|274aa|down_1|NZ_CP046514.1_1873105_1873927_+	NA|539aa|up_9|NZ_CP046514.1_1859000_1860617_+	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|116aa|up_8|NZ_CP046514.1_1860803_1861151_+	NA	NA|329aa|up_7|NZ_CP046514.1_1861153_1862140_+	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|233aa|up_6|NZ_CP046514.1_1862270_1862969_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|30aa|up_5|NZ_CP046514.1_1863121_1863211_-	NA	NA|193aa|up_4|NZ_CP046514.1_1863402_1863981_-	NA	NA|513aa|up_3|NZ_CP046514.1_1864162_1865701_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|375aa|up_2|NZ_CP046514.1_1865715_1866840_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|388aa|up_1|NZ_CP046514.1_1866937_1868101_-	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|158aa|up_0|NZ_CP046514.1_1868102_1868576_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|356aa|down_0|NZ_CP046514.1_1871923_1872991_-	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|274aa|down_1|NZ_CP046514.1_1873105_1873927_+	NA	NA|523aa|down_2|NZ_CP046514.1_1875544_1877113_-	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|267aa|down_3|NZ_CP046514.1_1877922_1878723_-	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|727aa|down_4|NZ_CP046514.1_1878929_1881110_-	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2	NA|304aa|down_5|NZ_CP046514.1_1881385_1882297_+	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E	NA|181aa|down_6|NZ_CP046514.1_1882378_1882921_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|332aa|down_7|NZ_CP046514.1_1883020_1884016_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|133aa|down_8|NZ_CP046514.1_1884096_1884495_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|126aa|down_9|NZ_CP046514.1_1884582_1884960_-	PRK05179, rpsM, 30S ribosomal protein S13; Validated
GCF_009738515.1_ASM973851v1	NZ_CP046514	Bifidobacterium longum strain JSRL02 chromosome, complete genome	8	2007247-2007320	7	CRISPRCasFinder	no		RT,cas3,WYL,DEDDh,cas2,cas1,csb3,csb2gr5,cas7,casR	Orphan	AAATGACGAACCGGGACAGCGAA	23	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,WYL,DEDDh,cas2,cas1,csb3,csb2gr5,cas7,casR	NA|59aa|up_0|NZ_CP046514.1_2006227_2006404_+,NA	NA|378aa|up_9|NZ_CP046514.1_1993800_1994934_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|up_8|NZ_CP046514.1_1994934_1996626_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|83aa|up_7|NZ_CP046514.1_1996694_1996943_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|up_6|NZ_CP046514.1_1996965_1997274_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1015aa|up_5|NZ_CP046514.1_1997425_2000470_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family	NA|425aa|up_4|NZ_CP046514.1_2000806_2002081_-	cd05647, M20_DapE_actinobac, M20 Peptidase actinobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase	NA|315aa|up_3|NZ_CP046514.1_2002118_2003063_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|483aa|up_2|NZ_CP046514.1_2003238_2004687_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|358aa|up_1|NZ_CP046514.1_2004683_2005757_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|59aa|up_0|NZ_CP046514.1_2006227_2006404_+	NA	NA|485aa|down_0|NZ_CP046514.1_2007399_2008854_-	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|371aa|down_1|NZ_CP046514.1_2008990_2010103_-	PRK01212, PRK01212, homoserine kinase; Provisional	NA|439aa|down_2|NZ_CP046514.1_2010197_2011514_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|531aa|down_3|NZ_CP046514.1_2011674_2013267_-	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|621aa|down_4|NZ_CP046514.1_2013269_2015132_-	COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	NA|222aa|down_5|NZ_CP046514.1_2015345_2016011_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|422aa|down_6|NZ_CP046514.1_2016019_2017285_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|311aa|down_7|NZ_CP046514.1_2017361_2018294_+	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|418aa|down_8|NZ_CP046514.1_2018387_2019641_+	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|442aa|down_9|NZ_CP046514.1_2019689_2021015_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
