assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009738475.1_ASM973847v1	NZ_CP036530	Streptococcus pyogenes strain STAB09023 chromosome, complete genome	1	791085-791385	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type II-A,Type II-C,Type II-B	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACT,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACT,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	37,37,36	0	0	NA	NA	II-A:II-A:II-A	3,4,4	4	TypeII-A,TypeII-C,TypeII-B	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|214aa|up_8|NZ_CP036530.1_780546_781188_+,NA	NA|452aa|up_9|NZ_CP036530.1_779067_780423_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|NZ_CP036530.1_780546_781188_+	NA	NA|377aa|up_7|NZ_CP036530.1_781250_782381_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|NZ_CP036530.1_782390_783143_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|NZ_CP036530.1_783142_783907_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|NZ_CP036530.1_783906_784539_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1369aa|up_3|NZ_CP036530.1_785016_789123_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|NZ_CP036530.1_789122_789992_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|NZ_CP036530.1_789988_790330_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NZ_CP036530.1_790319_790982_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|611aa|down_0|NZ_CP036530.1_792027_793860_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|322aa|down_1|NZ_CP036530.1_794198_795164_+	PHA03169, PHA03169, hypothetical protein; Provisional	NA|146aa|down_2|NZ_CP036530.1_795363_795801_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_3|NZ_CP036530.1_795930_796950_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_4|NZ_CP036530.1_797156_797582_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_5|NZ_CP036530.1_797600_798092_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_6|NZ_CP036530.1_798108_798918_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_7|NZ_CP036530.1_798914_799742_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|550aa|down_8|NZ_CP036530.1_799877_801527_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|263aa|down_9|NZ_CP036530.1_801530_802319_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
GCF_009738475.1_ASM973847v1	NZ_CP036530	Streptococcus pyogenes strain STAB09023 chromosome, complete genome	2	987124-987225	2	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AATAATTGGTATAGTCTAATTATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|262aa|down_6|NZ_CP036530.1_995055_995841_+	NA|83aa|up_9|NZ_CP036530.1_974840_975089_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|773aa|up_8|NZ_CP036530.1_975451_977770_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|441aa|up_7|NZ_CP036530.1_978298_979621_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|412aa|up_6|NZ_CP036530.1_979740_980976_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|258aa|up_5|NZ_CP036530.1_981345_982119_-	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|279aa|up_4|NZ_CP036530.1_982488_983325_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|210aa|up_3|NZ_CP036530.1_983340_983970_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|up_2|NZ_CP036530.1_983979_984621_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|112aa|up_1|NZ_CP036530.1_984727_985063_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|605aa|up_0|NZ_CP036530.1_985258_987073_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|186aa|down_0|NZ_CP036530.1_987248_987806_-	TIGR02227, Inactive_signal_peptidase_IA	NA|501aa|down_1|NZ_CP036530.1_988023_989526_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|338aa|down_2|NZ_CP036530.1_989588_990602_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1037aa|down_3|NZ_CP036530.1_990681_993792_-	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|124aa|down_4|NZ_CP036530.1_993976_994348_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_5|NZ_CP036530.1_994347_995046_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_6|NZ_CP036530.1_995055_995841_+	NA	NA|205aa|down_7|NZ_CP036530.1_995971_996586_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|209aa|down_8|NZ_CP036530.1_997319_997946_+	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|755aa|down_9|NZ_CP036530.1_998202_1000467_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins
GCF_009738475.1_ASM973847v1	NZ_CP036530	Streptococcus pyogenes strain STAB09023 chromosome, complete genome	3	1181674-1182569	2,3,2	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type I-U, Type I-U?,Type I-C	TATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGGTGAGAC	33,32,32	0	0	NA	NA	I-C:I-C:I-C	13,13,13	13	TypeI-U,TypeI-U?,TypeI-C	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA	NA|412aa|up_9|NZ_CP036530.1_1171609_1172845_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|227aa|up_8|NZ_CP036530.1_1173118_1173799_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|158aa|up_7|NZ_CP036530.1_1173940_1174414_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|239aa|up_6|NZ_CP036530.1_1174579_1175296_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|360aa|up_5|NZ_CP036530.1_1175309_1176389_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|578aa|up_4|NZ_CP036530.1_1176461_1178195_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|up_3|NZ_CP036530.1_1178191_1178932_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|369aa|up_2|NZ_CP036530.1_1179019_1180126_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|NZ_CP036530.1_1180168_1180792_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|NZ_CP036530.1_1180804_1181515_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|NZ_CP036530.1_1182717_1183011_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|342aa|down_1|NZ_CP036530.1_1183021_1184047_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|225aa|down_2|NZ_CP036530.1_1184043_1184718_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_3|NZ_CP036530.1_1184719_1185568_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|632aa|down_4|NZ_CP036530.1_1185572_1187468_-	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas5|243aa|down_5|NZ_CP036530.1_1187467_1188196_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|803aa|down_6|NZ_CP036530.1_1188328_1190737_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_7|NZ_CP036530.1_1190890_1193539_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_8|NZ_CP036530.1_1193540_1194104_-	pfam13238, AAA_18, AAA domain	NA|67aa|down_9|NZ_CP036530.1_1194100_1194301_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
GCF_009738475.1_ASM973847v1	NZ_CP036530	Streptococcus pyogenes strain STAB09023 chromosome, complete genome	4	1576857-1577048	3	CRT	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	TGATGGAGATGGGGTTTC	18	0	0	NA	NA	NA	3	3	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|75aa|up_8|NZ_CP036530.1_1566841_1567066_-,NA|84aa|down_5|NZ_CP036530.1_1587901_1588153_-	NA|234aa|up_9|NZ_CP036530.1_1565814_1566516_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|75aa|up_8|NZ_CP036530.1_1566841_1567066_-	NA	NA|543aa|up_7|NZ_CP036530.1_1567244_1568873_+	cd08518, PBP2_NikA_DppA_OppA_like_19, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|326aa|up_6|NZ_CP036530.1_1568985_1569963_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|274aa|up_5|NZ_CP036530.1_1569959_1570781_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|268aa|up_4|NZ_CP036530.1_1570792_1571596_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|209aa|up_3|NZ_CP036530.1_1571579_1572206_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|67aa|up_2|NZ_CP036530.1_1572285_1572486_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|824aa|up_1|NZ_CP036530.1_1572654_1575126_-	TIGR01363, pneumococcal_histidine_triad_A_protein, streptococcal histidine triad protein	NA|307aa|up_0|NZ_CP036530.1_1575138_1576059_-	cd01017, AdcA, Metal binding protein AdcA	NA|1183aa|down_0|NZ_CP036530.1_1577642_1581191_-	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases	NA|369aa|down_1|NZ_CP036530.1_1581525_1582632_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|368aa|down_2|NZ_CP036530.1_1582841_1583945_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|426aa|down_3|NZ_CP036530.1_1584169_1585447_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|531aa|down_4|NZ_CP036530.1_1585633_1587226_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|84aa|down_5|NZ_CP036530.1_1587901_1588153_-	NA	NA|543aa|down_6|NZ_CP036530.1_1588230_1589859_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|463aa|down_7|NZ_CP036530.1_1589960_1591349_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|218aa|down_8|NZ_CP036530.1_1591345_1591999_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_9|NZ_CP036530.1_1592092_1593310_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB
