assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009738145.1_ASM973814v1	NZ_CP045190	Escherichia coli strain NT1F31 chromosome, complete genome	1	1041845-1042483	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	NA|47aa|up_1|NZ_CP045190.1_1040554_1040695_-,NA	NA|434aa|up_9|NZ_CP045190.1_1031251_1032553_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP045190.1_1032600_1034835_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP045190.1_1034912_1035161_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP045190.1_1035160_1035496_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP045190.1_1035566_1036358_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP045190.1_1036585_1038223_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP045190.1_1038310_1039609_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP045190.1_1039668_1040541_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP045190.1_1040554_1040695_-	NA	NA|224aa|up_0|NZ_CP045190.1_1040833_1041505_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|91aa|down_0|NZ_CP045190.1_1043350_1043623_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_1|NZ_CP045190.1_1043613_1044885_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|down_2|NZ_CP045190.1_1044962_1045328_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_3|NZ_CP045190.1_1045643_1047443_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|NZ_CP045190.1_1047442_1049155_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|NZ_CP045190.1_1049229_1049964_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|down_6|NZ_CP045190.1_1050228_1050381_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|down_7|NZ_CP045190.1_1050573_1051686_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|339aa|down_8|NZ_CP045190.1_1051765_1052782_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	cas3|900aa|down_9|NZ_CP045190.1_1053123_1055823_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
GCF_009738145.1_ASM973814v1	NZ_CP045190	Escherichia coli strain NT1F31 chromosome, complete genome	2	1061779-1062234	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,7,7	7	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	NA,NA	NA|371aa|up_9|NZ_CP045190.1_1050573_1051686_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|339aa|up_8|NZ_CP045190.1_1051765_1052782_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	cas3|900aa|up_7|NZ_CP045190.1_1053123_1055823_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP045190.1_1055920_1057483_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP045190.1_1057479_1058016_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP045190.1_1058027_1059083_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP045190.1_1059093_1059840_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP045190.1_1059821_1060472_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP045190.1_1060468_1061392_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP045190.1_1061388_1061682_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP045190.1_1062315_1063353_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP045190.1_1063604_1064513_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP045190.1_1064514_1065942_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP045190.1_1065941_1066547_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP045190.1_1066596_1066920_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP045190.1_1067113_1067425_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP045190.1_1067443_1068154_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP045190.1_1068153_1068633_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP045190.1_1068629_1069679_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP045190.1_1069659_1070421_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_009738145.1_ASM973814v1	NZ_CP045190	Escherichia coli strain NT1F31 chromosome, complete genome	3	1589093-1589210	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	NA,NA	NA|62aa|up_9|NZ_CP045190.1_1578378_1578564_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP045190.1_1578576_1579476_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP045190.1_1579668_1580859_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP045190.1_1580855_1582115_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP045190.1_1582104_1583733_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP045190.1_1584005_1585364_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP045190.1_1585368_1586445_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP045190.1_1586907_1587558_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP045190.1_1587611_1587866_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP045190.1_1587865_1588996_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP045190.1_1589229_1591515_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP045190.1_1592210_1595963_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP045190.1_1596090_1596813_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP045190.1_1596959_1599587_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP045190.1_1599735_1601424_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP045190.1_1601420_1602044_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|down_6|NZ_CP045190.1_1606582_1608232_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP045190.1_1608236_1609013_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|950aa|down_8|NZ_CP045190.1_1609287_1612137_+	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC	NA|217aa|down_9|NZ_CP045190.1_1612336_1612987_-	PRK10840, PRK10840, transcriptional regulator RcsB; Provisional
GCF_009738145.1_ASM973814v1	NZ_CP045190	Escherichia coli strain NT1F31 chromosome, complete genome	4	2182538-2182661	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	NA,NA|30aa|down_7|NZ_CP045190.1_2191557_2191647_+	NA|471aa|up_9|NZ_CP045190.1_2171992_2173405_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP045190.1_2173961_2174171_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP045190.1_2174625_2175252_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP045190.1_2175272_2177375_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP045190.1_2177378_2178026_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP045190.1_2178089_2178758_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP045190.1_2178754_2179540_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP045190.1_2179543_2180356_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP045190.1_2180367_2181972_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP045190.1_2182097_2182403_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP045190.1_2182975_2184232_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP045190.1_2184272_2185646_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP045190.1_2185860_2186502_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP045190.1_2186541_2187690_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP045190.1_2187980_2189192_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP045190.1_2189304_2190237_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP045190.1_2190233_2191259_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP045190.1_2191557_2191647_+	NA	NA|390aa|down_8|NZ_CP045190.1_2191812_2192982_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP045190.1_2193216_2193798_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_009738145.1_ASM973814v1	NZ_CP045190	Escherichia coli strain NT1F31 chromosome, complete genome	5	2220141-2220274	5	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	Unclear	GCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	NA,NA	NA|110aa|up_9|NZ_CP045190.1_2210780_2211110_+	PRK11372, PRK11372, C-type lysozyme inhibitor	NA|219aa|up_8|NZ_CP045190.1_2211168_2211825_+	PRK05679, PRK05679, pyridoxal 5'-phosphate synthase	NA|425aa|up_7|NZ_CP045190.1_2211953_2213228_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|287aa|up_6|NZ_CP045190.1_2213289_2214150_+	PRK05756, PRK05756, pyridoxal kinase PdxY	NA|202aa|up_5|NZ_CP045190.1_2214193_2214799_-	PRK10542, PRK10542, glutathionine S-transferase; Provisional	NA|501aa|up_4|NZ_CP045190.1_2214904_2216407_-	PRK09584, tppB, dipeptide/tripeptide permease DtpA	NA|212aa|up_3|NZ_CP045190.1_2217017_2217653_-	PRK10702, PRK10702, endonuclease III; Provisional	NA|232aa|up_2|NZ_CP045190.1_2217652_2218348_-	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional	NA|207aa|up_1|NZ_CP045190.1_2218351_2218972_-	PRK01908, PRK01908, electron transport complex protein RnfG; Validated	NA|353aa|up_0|NZ_CP045190.1_2218975_2220034_-	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed	NA|193aa|down_0|NZ_CP045190.1_2221961_2222540_-	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional	NA|194aa|down_1|NZ_CP045190.1_2222539_2223121_-	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional	NA|147aa|down_2|NZ_CP045190.1_2223197_2223638_-	pfam10754, DUF2569, Protein of unknown function (DUF2569)	NA|72aa|down_3|NZ_CP045190.1_2223723_2223939_-	PRK10391, PRK10391, transcription modulator YdgT	NA|42aa|down_4|NZ_CP045190.1_2224211_2224337_-	NF033231, small_Blr, division septum protein Blr	NA|347aa|down_5|NZ_CP045190.1_2224579_2225620_+	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|334aa|down_6|NZ_CP045190.1_2225653_2226655_-	PRK09358, PRK09358, adenosine deaminase; Provisional	NA|391aa|down_7|NZ_CP045190.1_2226758_2227931_-	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|531aa|down_8|NZ_CP045190.1_2227940_2229533_-	PRK10110, PRK10110, PTS maltose transporter subunit IICB	NA|343aa|down_9|NZ_CP045190.1_2229707_2230736_+	PRK10014, PRK10014, DNA-binding transcriptional repressor MalI; Provisional
GCF_009738145.1_ASM973814v1	NZ_CP045190	Escherichia coli strain NT1F31 chromosome, complete genome	6	2865401-2865492	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	NA|70aa|up_9|NZ_CP045190.1_2854476_2854686_-,NA	NA|70aa|up_9|NZ_CP045190.1_2854476_2854686_-	NA	NA|1321aa|up_8|NZ_CP045190.1_2854740_2858703_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP045190.1_2858742_2859381_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP045190.1_2859668_2860760_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP045190.1_2860759_2861452_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP045190.1_2861463_2861850_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP045190.1_2861857_2862658_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP045190.1_2862667_2863258_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP045190.1_2863268_2863763_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP045190.1_2863783_2865112_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP045190.1_2865915_2866512_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP045190.1_2866532_2866760_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP045190.1_2866797_2868039_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP045190.1_2869846_2870767_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP045190.1_2870766_2871072_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP045190.1_2871223_2871823_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP045190.1_2871819_2874366_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP045190.1_2874365_2875538_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP045190.1_2875667_2876360_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP045190.1_2876332_2877361_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_009738145.1_ASM973814v1	NZ_CP045190	Escherichia coli strain NT1F31 chromosome, complete genome	7	3006994-3007199	7,3,3	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAACG	28,28,29	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	NA,NA	NA|431aa|up_9|NZ_CP045190.1_2992129_2993422_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP045190.1_2993512_2994856_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP045190.1_2994866_2995478_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1326aa|up_6|NZ_CP045190.1_2995632_2999610_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP045190.1_2999744_3000239_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP045190.1_3000783_3001749_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP045190.1_3001871_3003638_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP045190.1_3003638_3005360_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP045190.1_3005401_3006106_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP045190.1_3006390_3006609_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP045190.1_3007409_3009686_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP045190.1_3009716_3010037_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP045190.1_3010359_3010584_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|647aa|down_3|NZ_CP045190.1_3010662_3012603_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP045190.1_3012599_3013715_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP045190.1_3013865_3014822_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP045190.1_3014818_3016477_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP045190.1_3016901_3017597_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP045190.1_3018091_3018991_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP045190.1_3019134_3020787_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_009738145.1_ASM973814v1	NZ_CP045190	Escherichia coli strain NT1F31 chromosome, complete genome	8	3172618-3172762	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	NA|196aa|up_8|NZ_CP045190.1_3167171_3167759_+,NA|161aa|up_5|NZ_CP045190.1_3168250_3168733_+,NA|115aa|up_3|NZ_CP045190.1_3169419_3169764_+,NA	NA|227aa|up_9|NZ_CP045190.1_3166494_3167175_+	smart00382, AAA, ATPases associated with a variety of cellular activities	NA|196aa|up_8|NZ_CP045190.1_3167171_3167759_+	NA	NA|99aa|up_7|NZ_CP045190.1_3167782_3168079_+	pfam11043, DUF2856, Protein of unknown function (DUF2856)	NA|55aa|up_6|NZ_CP045190.1_3168089_3168254_+	pfam10930, DUF2737, Protein of unknown function (DUF2737)	NA|161aa|up_5|NZ_CP045190.1_3168250_3168733_+	NA	NA|172aa|up_4|NZ_CP045190.1_3168729_3169245_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|115aa|up_3|NZ_CP045190.1_3169419_3169764_+	NA	NA|73aa|up_2|NZ_CP045190.1_3169867_3170086_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP045190.1_3170063_3171134_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP045190.1_3171268_3172552_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP045190.1_3172785_3175047_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP045190.1_3175229_3176663_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP045190.1_3176738_3177791_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP045190.1_3177974_3178928_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP045190.1_3178968_3179964_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP045190.1_3180118_3180937_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP045190.1_3180937_3181996_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP045190.1_3181998_3182688_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP045190.1_3182687_3183461_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP045190.1_3183627_3183777_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_009738145.1_ASM973814v1	NZ_CP045190	Escherichia coli strain NT1F31 chromosome, complete genome	9	3413855-3413951	9	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	NA,NA	NA|231aa|up_9|NZ_CP045190.1_3405650_3406343_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP045190.1_3406562_3407105_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP045190.1_3407575_3408442_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP045190.1_3408443_3408656_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP045190.1_3408763_3409285_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP045190.1_3409320_3410706_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP045190.1_3410879_3411374_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP045190.1_3411376_3412099_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP045190.1_3412216_3412726_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP045190.1_3412722_3413790_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP045190.1_3413984_3414878_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP045190.1_3414874_3415690_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP045190.1_3415700_3416960_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP045190.1_3416969_3418637_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP045190.1_3418953_3420003_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP045190.1_3420024_3421260_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP045190.1_3421270_3422056_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|NZ_CP045190.1_3422283_3423429_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP045190.1_3423450_3424752_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP045190.1_3424808_3426170_-	PRK08044, PRK08044, allantoinase AllB
GCF_009738145.1_ASM973814v1	NZ_CP045190	Escherichia coli strain NT1F31 chromosome, complete genome	10	3555253-3555397	10	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	NA,NA|28aa|down_2|NZ_CP045190.1_3557442_3557526_-	NA|357aa|up_9|NZ_CP045190.1_3540391_3541462_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP045190.1_3541554_3542136_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP045190.1_3542140_3543958_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP045190.1_3544113_3545487_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP045190.1_3545562_3546882_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP045190.1_3547288_3548584_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP045190.1_3548641_3549331_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP045190.1_3549520_3550723_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP045190.1_3550719_3553866_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP045190.1_3553991_3555176_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP045190.1_3555420_3556329_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP045190.1_3556453_3557365_+	PRK00321, rdgC, recombination associated protein; Reviewed	NA|28aa|down_2|NZ_CP045190.1_3557442_3557526_-	NA	NA|95aa|down_3|NZ_CP045190.1_3558011_3558296_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP045190.1_3558367_3559045_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP045190.1_3559302_3559494_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP045190.1_3559543_3560068_-	PRK03731, aroL, shikimate kinase AroL	NA|155aa|down_7|NZ_CP045190.1_3560244_3560709_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP045190.1_3560828_3561638_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP045190.1_3561654_3562770_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_009738145.1_ASM973814v1	NZ_CP045190	Escherichia coli strain NT1F31 chromosome, complete genome	11	3867040-3867171	11	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	Orphan	AATGCAGACTAACCCGCAGATCCAGCAGCGAAGAGA	36	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	NA,NA	NA|309aa|up_9|NZ_CP045190.1_3853153_3854080_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|221aa|up_8|NZ_CP045190.1_3854188_3854851_+	PRK10437, PRK10437, carbonic anhydrase; Provisional	NA|179aa|up_7|NZ_CP045190.1_3854891_3855428_-	PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional	NA|797aa|up_6|NZ_CP045190.1_3855633_3858024_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|517aa|up_5|NZ_CP045190.1_3858225_3859776_-	PRK10965, PRK10965, multicopper oxidase; Provisional	NA|116aa|up_4|NZ_CP045190.1_3859941_3860289_+	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS)	NA|289aa|up_3|NZ_CP045190.1_3860394_3861261_+	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|265aa|up_2|NZ_CP045190.1_3861276_3862071_+	PRK05462, PRK05462, adenosylmethionine decarboxylase	NA|121aa|up_1|NZ_CP045190.1_3862108_3862471_-	PRK05248, PRK05248, hypothetical protein; Provisional	NA|866aa|up_0|NZ_CP045190.1_3862645_3865243_-	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|475aa|down_0|NZ_CP045190.1_3867521_3868946_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|631aa|down_1|NZ_CP045190.1_3869270_3871163_-	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|888aa|down_2|NZ_CP045190.1_3871177_3873841_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|255aa|down_3|NZ_CP045190.1_3874001_3874766_-	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|457aa|down_4|NZ_CP045190.1_3875309_3876680_+	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|285aa|down_5|NZ_CP045190.1_3876722_3877577_-	pfam17113, AmpE, Regulatory signalling modulator protein AmpE	NA|184aa|down_6|NZ_CP045190.1_3877573_3878125_-	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|298aa|down_7|NZ_CP045190.1_3878212_3879106_+	PRK09016, PRK09016, carboxylating nicotinate-nucleotide diphosphorylase	NA|425aa|down_8|NZ_CP045190.1_3879631_3880905_-	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed	NA|54aa|down_9|NZ_CP045190.1_3880923_3881085_+	PRK10574, PRK10574, putative major pilin subunit; Provisional
GCF_009738145.1_ASM973814v1	NZ_CP045190	Escherichia coli strain NT1F31 chromosome, complete genome	12	3954490-3954625	4	PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	NA,NA	NA|126aa|up_9|NZ_CP045190.1_3945196_3945574_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP045190.1_3945580_3946423_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP045190.1_3946500_3946980_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP045190.1_3947171_3949034_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP045190.1_3949026_3949557_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP045190.1_3949664_3950996_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP045190.1_3951054_3951342_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP045190.1_3951338_3952625_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP045190.1_3952675_3953617_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP045190.1_3953631_3954402_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP045190.1_3954874_3956389_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP045190.1_3956419_3957562_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP045190.1_3957690_3958908_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP045190.1_3958981_3960535_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP045190.1_3960643_3961429_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP045190.1_3961434_3962025_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP045190.1_3962233_3962629_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP045190.1_3962890_3966112_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP045190.1_3966129_3967278_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP045190.1_3967733_3968555_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_009738145.1_ASM973814v1	NZ_CP045190	Escherichia coli strain NT1F31 chromosome, complete genome	13	3962063-3962204	12	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	NA,NA	NA|96aa|up_9|NZ_CP045190.1_3951054_3951342_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_CP045190.1_3951338_3952625_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_CP045190.1_3952675_3953617_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_CP045190.1_3953631_3954402_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_CP045190.1_3954874_3956389_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_CP045190.1_3956419_3957562_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_CP045190.1_3957690_3958908_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_CP045190.1_3958981_3960535_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP045190.1_3960643_3961429_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP045190.1_3961434_3962025_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP045190.1_3962233_3962629_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP045190.1_3962890_3966112_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP045190.1_3966129_3967278_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP045190.1_3967733_3968555_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP045190.1_3968721_3969636_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP045190.1_3969701_3970652_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP045190.1_3970653_3971103_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP045190.1_3971227_3971722_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP045190.1_3971721_3974538_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP045190.1_3974580_3975522_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
GCF_009738145.1_ASM973814v1	NZ_CP045190	Escherichia coli strain NT1F31 chromosome, complete genome	14	4106300-4106449	13	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	NA,NA|77aa|down_6|NZ_CP045190.1_4113589_4113820_-,NA|448aa|down_7|NZ_CP045190.1_4113806_4115150_-	NA|395aa|up_9|NZ_CP045190.1_4093396_4094581_-	PRK03906, PRK03906, mannonate dehydratase; Provisional	NA|301aa|up_8|NZ_CP045190.1_4095367_4096270_-	pfam09160, FimH_man-bind, FimH, mannose binding	NA|168aa|up_7|NZ_CP045190.1_4096289_4096793_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|110aa|up_6|NZ_CP045190.1_4097346_4097676_-	PRK15193, PRK15193, outer membrane usher protein; Provisional	NA|238aa|up_5|NZ_CP045190.1_4098416_4099130_-	PRK09692, PRK09692, integrase; Provisional	NA|340aa|up_4|NZ_CP045190.1_4099532_4100552_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|501aa|up_3|NZ_CP045190.1_4100681_4102184_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP045190.1_4102302_4103385_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP045190.1_4103384_4104485_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP045190.1_4104751_4106263_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP045190.1_4106616_4107060_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP045190.1_4107059_4109915_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP045190.1_4109968_4111165_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP045190.1_4111357_4111861_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP045190.1_4111906_4112323_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP045190.1_4112484_4113489_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|77aa|down_6|NZ_CP045190.1_4113589_4113820_-	NA	NA|448aa|down_7|NZ_CP045190.1_4113806_4115150_-	NA	NA|151aa|down_8|NZ_CP045190.1_4115272_4115725_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_9|NZ_CP045190.1_4115869_4116463_-	COG1309, AcrR, Transcriptional regulator [Transcription]
GCF_009738145.1_ASM973814v1	NZ_CP045191	Escherichia coli strain NT1F31 plasmid pNT1F31-113kb, complete sequence	1	1455-1629	1	PILER-CR	no		DEDDh	Orphan	GTATGCTGTCAGCGGTAA	18	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	NA|365aa|up_0|NZ_CP045191.1_0_1095_+,NA|71aa|down_0|NZ_CP045191.1_1674_1887_-,NA|112aa|down_1|NZ_CP045191.1_1886_2222_-,NA|60aa|down_2|NZ_CP045191.1_2218_2398_-,NA|92aa|down_3|NZ_CP045191.1_2436_2712_-,NA|67aa|down_8|NZ_CP045191.1_11985_12186_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|365aa|up_0|NZ_CP045191.1_0_1095_+	NA	NA|71aa|down_0|NZ_CP045191.1_1674_1887_-	NA	NA|112aa|down_1|NZ_CP045191.1_1886_2222_-	NA	NA|60aa|down_2|NZ_CP045191.1_2218_2398_-	NA	NA|92aa|down_3|NZ_CP045191.1_2436_2712_-	NA	NA|1006aa|down_4|NZ_CP045191.1_3592_6610_-	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|388aa|down_5|NZ_CP045191.1_6624_7788_-	pfam14088, DUF4268, Domain of unknown function (DUF4268)	NA|444aa|down_6|NZ_CP045191.1_7797_9129_-	cd17265, RMtype1_S_Eco4255III-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Escherichia coli O118:H16 07-4255 S subunit (S	NA|810aa|down_7|NZ_CP045191.1_9128_11558_-	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|67aa|down_8|NZ_CP045191.1_11985_12186_-	NA	NA|780aa|down_9|NZ_CP045191.1_12276_14616_-	COG0468, RecA, RecA/RadA recombinase [DNA replication, recombination, and repair]
GCF_009738145.1_ASM973814v1	NZ_CP045188	Escherichia coli strain NT1F31 plasmid pNT1F31-tetX4, complete sequence	1	26727-26846	1	CRISPRCasFinder	no			Orphan	TGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4	NA|28aa|up_6|NZ_CP045188.1_21355_21439_+,NA|94aa|up_3|NZ_CP045188.1_23378_23660_+,NA|326aa|up_2|NZ_CP045188.1_23684_24662_+,NA|119aa|up_1|NZ_CP045188.1_24658_25015_-,NA|86aa|down_2|NZ_CP045188.1_29147_29405_+	NA|219aa|up_9|NZ_CP045188.1_16118_16775_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|235aa|up_8|NZ_CP045188.1_17476_18181_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|479aa|up_7|NZ_CP045188.1_18447_19884_+	pfam03917, GSH_synth_ATP, Eukaryotic glutathione synthase, ATP binding domain	NA|28aa|up_6|NZ_CP045188.1_21355_21439_+	NA	NA|215aa|up_5|NZ_CP045188.1_21593_22238_-	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme	NA|221aa|up_4|NZ_CP045188.1_22618_23281_+	PHA02518, PHA02518, ParA-like protein; Provisional	NA|94aa|up_3|NZ_CP045188.1_23378_23660_+	NA	NA|326aa|up_2|NZ_CP045188.1_23684_24662_+	NA	NA|119aa|up_1|NZ_CP045188.1_24658_25015_-	NA	NA|279aa|up_0|NZ_CP045188.1_25637_26474_-	pfam01051, Rep_3, Initiator Replication protein	NA|84aa|down_0|NZ_CP045188.1_27707_27959_+	PRK02854, PRK02854, primosomal protein DnaT	NA|94aa|down_1|NZ_CP045188.1_27948_28230_+	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|86aa|down_2|NZ_CP045188.1_29147_29405_+	NA	NA|308aa|down_3|NZ_CP045188.1_29441_30365_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|66aa|down_4|NZ_CP045188.1_30753_30951_-	pfam11666, DUF2933, Protein of unknown function (DUF2933)	NA|826aa|down_5|NZ_CP045188.1_30991_33469_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|147aa|down_6|NZ_CP045188.1_33566_34007_-	COG3019, COG3019, Predicted metal-binding protein [General function prediction only]	NA|1049aa|down_7|NZ_CP045188.1_34093_37240_-	TIGR00914, Nickel-cobalt-cadmium_resistance_protein_NccA, heavy metal efflux pump, CzcA family	NA|431aa|down_8|NZ_CP045188.1_37250_38543_-	PRK09783, PRK09783, copper/silver efflux system membrane fusion protein CusB; Provisional	NA|118aa|down_9|NZ_CP045188.1_38656_39010_-	PRK09838, PRK09838, periplasmic copper-binding protein; Provisional
