assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009734465.1_ASM973446v1	NZ_CP046446	Leclercia sp. J807 chromosome, complete genome	1	930476-930560	1	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG	Orphan	GCCGCACCACCCGTCAGTCCGTAGGCCCG	29	1	1	930505-930531	NZ_CP046446.1_2339129-2339155	NA	1	1	Orphan	cas3,DEDDh,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG	NA,NA	NA|351aa|up_9|NZ_CP046446.1_918522_919575_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|304aa|up_8|NZ_CP046446.1_919706_920618_-	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]	NA|733aa|up_7|NZ_CP046446.1_920627_922826_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|319aa|up_6|NZ_CP046446.1_922822_923779_-	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|230aa|up_5|NZ_CP046446.1_923775_924465_-	PRK11433, PRK11433, aldehyde oxidoreductase 2Fe-2S subunit; Provisional	NA|89aa|up_4|NZ_CP046446.1_924776_925043_+	COG4226, HicB, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|608aa|up_3|NZ_CP046446.1_925115_926939_-	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|115aa|up_2|NZ_CP046446.1_927039_927384_-	COG3326, COG3326, Predicted membrane protein [Function unknown]	NA|602aa|up_1|NZ_CP046446.1_927401_929207_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|370aa|up_0|NZ_CP046446.1_929221_930331_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|466aa|down_0|NZ_CP046446.1_930860_932258_+	PRK11387, PRK11387, S-methylmethionine permease	NA|311aa|down_1|NZ_CP046446.1_932244_933177_+	PRK09485, mmuM, homocysteine methyltransferase; Provisional	NA|349aa|down_2|NZ_CP046446.1_933264_934311_-	PRK11432, fbpC, ferric ABC transporter ATP-binding protein	NA|693aa|down_3|NZ_CP046446.1_934315_936394_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_4|NZ_CP046446.1_936457_937489_-	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|434aa|down_5|NZ_CP046446.1_937502_938804_-	PRK11663, PRK11663, glucose-6-phosphate receptor/MFS transporter UhpC	NA|514aa|down_6|NZ_CP046446.1_938889_940431_-	COG3851, UhpB, Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]	NA|210aa|down_7|NZ_CP046446.1_940430_941060_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|466aa|down_8|NZ_CP046446.1_941472_942870_+	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism]	NA|203aa|down_9|NZ_CP046446.1_942880_943489_+	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA
GCF_009734465.1_ASM973446v1	NZ_CP046446	Leclercia sp. J807 chromosome, complete genome	2	1081458-1081554	2	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG	Orphan	CTTACCCGGCCTACGGTTCGAACGGTT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG	NA,NA|285aa|down_8|NZ_CP046446.1_1090546_1091401_-	NA|643aa|up_9|NZ_CP046446.1_1068126_1070055_+	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	NA|111aa|up_8|NZ_CP046446.1_1070108_1070441_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|202aa|up_7|NZ_CP046446.1_1070440_1071046_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|625aa|up_6|NZ_CP046446.1_1071157_1073032_+	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|215aa|up_5|NZ_CP046446.1_1073211_1073856_+	PRK00279, adk, adenylate kinase; Reviewed	NA|321aa|up_4|NZ_CP046446.1_1074102_1075065_+	PRK00035, hemH, ferrochelatase; Reviewed	NA|435aa|up_3|NZ_CP046446.1_1075127_1076432_+	PRK15074, PRK15074, inosine/guanosine kinase; Provisional	NA|555aa|up_2|NZ_CP046446.1_1076507_1078172_-	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional	NA|402aa|up_1|NZ_CP046446.1_1078406_1079612_-	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|551aa|up_0|NZ_CP046446.1_1079775_1081428_+	PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed	NA|160aa|down_0|NZ_CP046446.1_1081591_1082071_-	PRK10670, PRK10670, Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK	NA|265aa|down_1|NZ_CP046446.1_1082270_1083065_-	COG3735, COG3735, Uncharacterized protein conserved in bacteria [Function unknown]	NA|833aa|down_2|NZ_CP046446.1_1083140_1085639_-	PRK10671, copA, copper-exporting P-type ATPase CopA	NA|137aa|down_3|NZ_CP046446.1_1085745_1086156_+	PRK10227, PRK10227, HTH-type transcriptional regulator CueR	NA|239aa|down_4|NZ_CP046446.1_1086152_1086869_-	pfam11340, DUF3142, Protein of unknown function (DUF3142)	NA|715aa|down_5|NZ_CP046446.1_1086838_1088983_-	COG4105, ComL, DNA uptake lipoprotein [General function prediction only]	NA|153aa|down_6|NZ_CP046446.1_1088999_1089458_-	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|304aa|down_7|NZ_CP046446.1_1089457_1090369_-	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|285aa|down_8|NZ_CP046446.1_1090546_1091401_-	NA	NA|285aa|down_9|NZ_CP046446.1_1091724_1092579_-	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
GCF_009734465.1_ASM973446v1	NZ_CP046446	Leclercia sp. J807 chromosome, complete genome	3	1150963-1153573	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	cas3,DEDDh,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG	Type I-F	GATCACTGCCGTACAGGCAGCTTAGAAA,GNTCACTGCCGTACAGGCAGCTTAGAAA,TCACTGCCGTACAGGCAGCTTAGAAA	28,28,26	0	0	NA	NA	I-F:I-F:I-F	43,43,28	43	TypeI-F	cas3,DEDDh,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG	NA,NA	NA|82aa|up_9|NZ_CP046446.1_1138741_1138987_+	pfam10820, DUF2543, Protein of unknown function (DUF2543)	NA|163aa|up_8|NZ_CP046446.1_1139082_1139571_+	cd04458, CSP_CDS, Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea	NA|238aa|up_7|NZ_CP046446.1_1139798_1140512_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|51aa|up_6|NZ_CP046446.1_1141949_1142102_+	pfam01848, HOK_GEF, Hok/gef family	cas1|324aa|up_5|NZ_CP046446.1_1142402_1143374_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1088aa|up_4|NZ_CP046446.1_1143370_1146634_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|437aa|up_3|NZ_CP046446.1_1147031_1148342_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|309aa|up_2|NZ_CP046446.1_1148334_1149261_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|332aa|up_1|NZ_CP046446.1_1149272_1150268_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|up_0|NZ_CP046446.1_1150278_1150833_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|500aa|down_0|NZ_CP046446.1_1153696_1155196_-	cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like proteins; belongs to the FGGY family of carbohydrate kinases	NA|473aa|down_1|NZ_CP046446.1_1155210_1156629_-	COG2407, FucI, L-fucose isomerase and related proteins [Carbohydrate transport and metabolism]	NA|317aa|down_2|NZ_CP046446.1_1156663_1157614_-	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]	NA|277aa|down_3|NZ_CP046446.1_1157606_1158437_-	COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]	NA|318aa|down_4|NZ_CP046446.1_1158733_1159687_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|363aa|down_5|NZ_CP046446.1_1159795_1160884_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|492aa|down_6|NZ_CP046446.1_1160885_1162361_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|203aa|down_7|NZ_CP046446.1_1162411_1163020_-	COG5618, COG5618, Predicted periplasmic lipoprotein [General function prediction only]	NA|314aa|down_8|NZ_CP046446.1_1163031_1163973_-	cd19967, PBP1_TmRBP-like, D-ribose ABC transporter substrate-binding protein such as Thermoanaerobacter tengcongensis ribose binding protein (ttRBP)	NA|215aa|down_9|NZ_CP046446.1_1164108_1164753_-	PRK10251, PRK10251, enterobactin synthase subunit EntD
GCF_009734465.1_ASM973446v1	NZ_CP046446	Leclercia sp. J807 chromosome, complete genome	4	2092776-2092867	4	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG	Orphan	GCGCTGGAGCAGTTGAAGCAGGCTCATTC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG	NA|112aa|up_9|NZ_CP046446.1_2083755_2084091_+,NA|147aa|up_8|NZ_CP046446.1_2084183_2084624_-,NA|91aa|up_3|NZ_CP046446.1_2089098_2089371_+,NA|143aa|up_1|NZ_CP046446.1_2090999_2091428_+,NA|365aa|up_0|NZ_CP046446.1_2091439_2092534_+,NA|127aa|down_0|NZ_CP046446.1_2092948_2093329_+,NA|57aa|down_1|NZ_CP046446.1_2093328_2093499_+,NA|119aa|down_2|NZ_CP046446.1_2093650_2094007_+,NA|142aa|down_3|NZ_CP046446.1_2094009_2094435_+,NA|128aa|down_4|NZ_CP046446.1_2094431_2094815_+,NA|223aa|down_6|NZ_CP046446.1_2095680_2096349_+,NA|71aa|down_7|NZ_CP046446.1_2096366_2096579_-,NA|136aa|down_8|NZ_CP046446.1_2096685_2097093_-	NA|112aa|up_9|NZ_CP046446.1_2083755_2084091_+	NA	NA|147aa|up_8|NZ_CP046446.1_2084183_2084624_-	NA	NA|191aa|up_7|NZ_CP046446.1_2084646_2085219_+	pfam03592, Terminase_2, Terminase small subunit	NA|491aa|up_6|NZ_CP046446.1_2085205_2086678_+	COG5410, COG5410, Uncharacterized protein conserved in bacteria [Function unknown]	NA|483aa|up_5|NZ_CP046446.1_2086689_2088138_+	pfam06381, DUF1073, Protein of unknown function (DUF1073)	NA|339aa|up_4|NZ_CP046446.1_2088055_2089072_+	TIGR01641, Uncharacterized_protein_MJ0329, phage putative head morphogenesis protein, SPP1 gp7 family	NA|91aa|up_3|NZ_CP046446.1_2089098_2089371_+	NA	NA|463aa|up_2|NZ_CP046446.1_2089607_2090996_+	COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]	NA|143aa|up_1|NZ_CP046446.1_2090999_2091428_+	NA	NA|365aa|up_0|NZ_CP046446.1_2091439_2092534_+	NA	NA|127aa|down_0|NZ_CP046446.1_2092948_2093329_+	NA	NA|57aa|down_1|NZ_CP046446.1_2093328_2093499_+	NA	NA|119aa|down_2|NZ_CP046446.1_2093650_2094007_+	NA	NA|142aa|down_3|NZ_CP046446.1_2094009_2094435_+	NA	NA|128aa|down_4|NZ_CP046446.1_2094431_2094815_+	NA	NA|248aa|down_5|NZ_CP046446.1_2094878_2095622_+	COG5492, COG5492, Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]	NA|223aa|down_6|NZ_CP046446.1_2095680_2096349_+	NA	NA|71aa|down_7|NZ_CP046446.1_2096366_2096579_-	NA	NA|136aa|down_8|NZ_CP046446.1_2096685_2097093_-	NA	NA|87aa|down_9|NZ_CP046446.1_2097089_2097350_-	PHA01513, mnt, Mnt
