assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009734105.1_ASM973410v1	NZ_CP046381	Klebsiella pneumoniae strain BD_DM_782 chromosome, complete genome	1	1758029-1758271	1	PILER-CR	no		cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	Orphan	AGCGCCATCAGGCAGTGTGGCGGCTACGCCTGACCCGGCCTGGATTATACGGTGGGTGT	59	0	0	NA	NA	NA	2	2	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	NA|47aa|up_7|NZ_CP046381.1_1749071_1749212_-,NA	NA|425aa|up_9|NZ_CP046381.1_1746796_1748071_+	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion]	NA|204aa|up_8|NZ_CP046381.1_1748344_1748956_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|47aa|up_7|NZ_CP046381.1_1749071_1749212_-	NA	NA|234aa|up_6|NZ_CP046381.1_1749449_1750151_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|619aa|up_5|NZ_CP046381.1_1750165_1752022_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|451aa|up_4|NZ_CP046381.1_1752311_1753664_-	PRK11678, PRK11678, putative chaperone; Provisional	NA|283aa|up_3|NZ_CP046381.1_1753801_1754650_+	PRK10308, PRK10308, 3-methyl-adenine DNA glycosylase II; Provisional	NA|214aa|up_2|NZ_CP046381.1_1754764_1755406_+	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|194aa|up_1|NZ_CP046381.1_1755496_1756078_+	TIGR02274, Probable_deoxycytidine_triphosphate_deaminase, deoxycytidine triphosphate deaminase	NA|616aa|up_0|NZ_CP046381.1_1756108_1757956_+	PRK10833, PRK10833, putative assembly protein; Provisional	NA|528aa|down_0|NZ_CP046381.1_1758594_1760178_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|297aa|down_1|NZ_CP046381.1_1760943_1761834_+	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|210aa|down_2|NZ_CP046381.1_1762226_1762856_+	smart00014, acidPPc, Acid phosphatase homologues	NA|478aa|down_3|NZ_CP046381.1_1763815_1765249_+	pfam14052, Caps_assemb_Wzi, Capsule assembly protein Wzi	NA|379aa|down_4|NZ_CP046381.1_1765394_1766531_+	PRK15078, PRK15078, polysaccharide export protein Wza; Provisional	NA|149aa|down_5|NZ_CP046381.1_1766521_1766968_+	PRK11391, etp, phosphotyrosine-protein phosphatase; Provisional	NA|723aa|down_6|NZ_CP046381.1_1766985_1769154_+	PRK11519, PRK11519, tyrosine-protein kinase Wzc	NA|362aa|down_7|NZ_CP046381.1_1769194_1770280_+	pfam14897, EpsG, EpsG family	NA|170aa|down_8|NZ_CP046381.1_1770314_1770824_+	cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine	NA|346aa|down_9|NZ_CP046381.1_1770853_1771891_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2
GCF_009734105.1_ASM973410v1	NZ_CP046381	Klebsiella pneumoniae strain BD_DM_782 chromosome, complete genome	2	2205613-2206191	2,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	Type I-E	GTCTTCCCCACACGCGTGGGGGTGTTTC,GTCTTCCCCACACGCGTGGGGGTGTTTCT,GTCTTCCCCACACGCGTGGGGGTGTTTC	28,29,28	2	2	2206070-2206101|2206069-2206101	NZ_CP046382.1_51329-51360|NZ_CP046382.1_51328-51360	I-E,II-B:I-E,II-B:I-E,II-B	6,9,9	9	TypeI-E	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	NA,NA	NA|131aa|up_9|NZ_CP046381.1_2192114_2192507_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|411aa|up_8|NZ_CP046381.1_2192543_2193776_-	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|145aa|up_7|NZ_CP046381.1_2194341_2194776_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|400aa|up_6|NZ_CP046381.1_2194891_2196091_-	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|386aa|up_5|NZ_CP046381.1_2196386_2197544_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|717aa|up_4|NZ_CP046381.1_2197586_2199737_-	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|360aa|up_3|NZ_CP046381.1_2199983_2201063_-	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|363aa|up_2|NZ_CP046381.1_2201365_2202454_+	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|590aa|up_1|NZ_CP046381.1_2202527_2204297_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_0|NZ_CP046381.1_2204289_2205360_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|down_0|NZ_CP046381.1_2206602_2209218_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|down_1|NZ_CP046381.1_2209221_2210745_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|down_2|NZ_CP046381.1_2210756_2211323_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|down_3|NZ_CP046381.1_2211315_2211963_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|down_4|NZ_CP046381.1_2211992_2213027_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|232aa|down_5|NZ_CP046381.1_2213060_2213756_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|down_6|NZ_CP046381.1_2213755_2214631_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|down_7|NZ_CP046381.1_2214608_2214896_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_8|NZ_CP046381.1_2215703_2216819_+	PHA02053, PHA02053, hypothetical protein	NA|228aa|down_9|NZ_CP046381.1_2216829_2217513_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)
GCF_009734105.1_ASM973410v1	NZ_CP046381	Klebsiella pneumoniae strain BD_DM_782 chromosome, complete genome	3	2214944-2215468	3,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	Type I-E	GTCTTCCCCACGCACGTGGGGGTGTTTCT,GTCTTCCCCACGCACGTGGGGGTGTTTCT,GTCTTCCCCACGCACGTGGGGGTGTTTCT	29,29,29	1	2	2215339-2215370|2215339-2215370	NZ_CP046382.1_183828-183797|NZ_CP046384.1_100393-100362	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	7,8,8	8	TypeI-E	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	NA,NA	NA|590aa|up_9|NZ_CP046381.1_2202527_2204297_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_8|NZ_CP046381.1_2204289_2205360_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|up_7|NZ_CP046381.1_2206602_2209218_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|up_6|NZ_CP046381.1_2209221_2210745_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|up_5|NZ_CP046381.1_2210756_2211323_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|up_4|NZ_CP046381.1_2211315_2211963_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|up_3|NZ_CP046381.1_2211992_2213027_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|232aa|up_2|NZ_CP046381.1_2213060_2213756_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|up_1|NZ_CP046381.1_2213755_2214631_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|up_0|NZ_CP046381.1_2214608_2214896_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_0|NZ_CP046381.1_2215703_2216819_+	PHA02053, PHA02053, hypothetical protein	NA|228aa|down_1|NZ_CP046381.1_2216829_2217513_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|124aa|down_2|NZ_CP046381.1_2217573_2217945_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|251aa|down_3|NZ_CP046381.1_2218449_2219202_+	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|595aa|down_4|NZ_CP046381.1_2219204_2220989_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|446aa|down_5|NZ_CP046381.1_2221002_2222340_+	pfam00034, Cytochrom_C, Cytochrome c	NA|208aa|down_6|NZ_CP046381.1_2222423_2223047_+	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|220aa|down_7|NZ_CP046381.1_2223043_2223703_+	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|246aa|down_8|NZ_CP046381.1_2223752_2224490_+	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|77aa|down_9|NZ_CP046381.1_2224486_2224717_+	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]
GCF_009734105.1_ASM973410v1	NZ_CP046381	Klebsiella pneumoniae strain BD_DM_782 chromosome, complete genome	4	4303810-4303938	3	CRISPRCasFinder	no	DEDDh	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	Unclear	TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAAC	39	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	NA,NA	NA|428aa|up_9|NZ_CP046381.1_4293558_4294842_+	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase	NA|467aa|up_8|NZ_CP046381.1_4294977_4296378_+	PRK10197, PRK10197, GABA permease	NA|231aa|up_7|NZ_CP046381.1_4296423_4297116_+	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|133aa|up_6|NZ_CP046381.1_4297201_4297600_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_5|NZ_CP046381.1_4297657_4298902_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_4|NZ_CP046381.1_4299007_4299466_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_3|NZ_CP046381.1_4299723_4301181_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|151aa|up_2|NZ_CP046381.1_4301223_4301676_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_1|NZ_CP046381.1_4301678_4302734_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|287aa|up_0|NZ_CP046381.1_4302893_4303754_+	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|72aa|down_0|NZ_CP046381.1_4303976_4304192_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|408aa|down_1|NZ_CP046381.1_4304194_4305418_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_2|NZ_CP046381.1_4305430_4306027_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|213aa|down_3|NZ_CP046381.1_4306033_4306672_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|265aa|down_4|NZ_CP046381.1_4306664_4307459_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|413aa|down_5|NZ_CP046381.1_4307451_4308690_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|448aa|down_6|NZ_CP046381.1_4308693_4310037_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|247aa|down_7|NZ_CP046381.1_4310448_4311189_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_8|NZ_CP046381.1_4311159_4311927_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|194aa|down_9|NZ_CP046381.1_4312001_4312583_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase
