assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009731595.1_ASM973159v1	NZ_AP019712	Staphylococcus aureus strain Tokyo12480	1	638122-638230	1	CRISPRCasFinder	no		RT,cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA	39	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA,NA|169aa|down_4|NZ_AP019712.1_641963_642470_+,NA|239aa|down_5|NZ_AP019712.1_642631_643348_+	NA|210aa|up_9|NZ_AP019712.1_627891_628521_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|313aa|up_8|NZ_AP019712.1_628974_629913_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_7|NZ_AP019712.1_630122_630659_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_6|NZ_AP019712.1_630827_631304_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_5|NZ_AP019712.1_631343_632639_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_4|NZ_AP019712.1_632666_633188_+	pfam08741, YwhD, YwhD family	NA|337aa|up_3|NZ_AP019712.1_633686_634697_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|139aa|up_2|NZ_AP019712.1_634972_635389_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_AP019712.1_635385_637047_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_AP019712.1_637316_637952_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_AP019712.1_638281_639169_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_AP019712.1_639319_640270_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_AP019712.1_640324_641044_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_AP019712.1_641027_641828_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_AP019712.1_641963_642470_+	NA	NA|239aa|down_5|NZ_AP019712.1_642631_643348_+	NA	NA|263aa|down_6|NZ_AP019712.1_643516_644305_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_AP019712.1_644555_644930_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_AP019712.1_645877_646807_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_AP019712.1_646996_647221_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_009731595.1_ASM973159v1	NZ_AP019712	Staphylococcus aureus strain Tokyo12480	2	702755-702866	2	CRISPRCasFinder	no		RT,cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	GCACCAACTGCATAAGAGCCCCTAATTAATAAATTAAAAGGGG	43	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA,NA|230aa|down_2|NZ_AP019712.1_704687_705377_-,NA|100aa|down_5|NZ_AP019712.1_706547_706847_+	NA|206aa|up_9|NZ_AP019712.1_691963_692581_+	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|336aa|up_8|NZ_AP019712.1_692596_693604_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_7|NZ_AP019712.1_694185_694983_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_6|NZ_AP019712.1_695343_695988_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_5|NZ_AP019712.1_696669_698820_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|120aa|up_4|NZ_AP019712.1_698965_699325_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_3|NZ_AP019712.1_699514_700231_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_2|NZ_AP019712.1_700230_700704_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|215aa|up_1|NZ_AP019712.1_701055_701700_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|NZ_AP019712.1_701816_702683_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|NZ_AP019712.1_702883_704104_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|NZ_AP019712.1_704100_704589_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|NZ_AP019712.1_704687_705377_-	NA	NA|148aa|down_3|NZ_AP019712.1_705503_705947_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|132aa|down_4|NZ_AP019712.1_706014_706410_+	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	NA|100aa|down_5|NZ_AP019712.1_706547_706847_+	NA	NA|181aa|down_6|NZ_AP019712.1_706926_707469_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|NZ_AP019712.1_707563_708130_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|NZ_AP019712.1_708131_708590_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|NZ_AP019712.1_708592_709276_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCF_009731595.1_ASM973159v1	NZ_AP019712	Staphylococcus aureus strain Tokyo12480	3	755468-755552	3	CRISPRCasFinder	no		RT,cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	TTCTACAGACAATGCAAGTTGGGGTGGG	28	1	15	755496-755524|755496-755524|755496-755524|755496-755524|755496-755524|755496-755524|755496-755524|755496-755524|755496-755524|755496-755524|755496-755524|755496-755524|755496-755524|755496-755524|755496-755524	NZ_AP019712.1_2497291-2497319|NZ_AP019712.1_248430-248402|NZ_AP019712.1_248488-248460|NZ_AP019712.1_248546-248518|NZ_AP019712.1_2283506-2283478|NZ_AP019712.1_874258-874286|NZ_AP019712.1_919302-919330|NZ_AP019712.1_852004-851976|NZ_AP019712.1_940718-940690|NZ_AP019712.1_1945599-1945571|NZ_AP019712.1_874361-874389|NZ_AP019712.1_1136779-1136807|NZ_AP019712.1_2328465-2328493|NZ_AP019712.1_812671-812643|NZ_AP019712.1_812726-812698	NA	1	1	Orphan	RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA|69aa|up_9|NZ_AP019712.1_742329_742536_+,NA|34aa|down_1|NZ_AP019712.1_756979_757081_+	NA|69aa|up_9|NZ_AP019712.1_742329_742536_+	NA	NA|237aa|up_8|NZ_AP019712.1_742622_743333_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_AP019712.1_743316_744321_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_AP019712.1_744794_746735_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_AP019712.1_747005_748889_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_AP019712.1_748900_750682_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_AP019712.1_750902_751880_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_AP019712.1_751872_753387_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_AP019712.1_753626_754685_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_AP019712.1_754843_755386_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_AP019712.1_755971_756889_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_AP019712.1_756979_757081_+	NA	NA|502aa|down_2|NZ_AP019712.1_757158_758664_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_AP019712.1_759003_759504_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_AP019712.1_759523_760390_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_AP019712.1_761191_761590_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_AP019712.1_761552_763658_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_AP019712.1_763777_764749_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|324aa|down_8|NZ_AP019712.1_765118_766090_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|319aa|down_9|NZ_AP019712.1_766076_767033_+	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_009731595.1_ASM973159v1	NZ_AP019712	Staphylococcus aureus strain Tokyo12480	4	801766-801848	4	CRISPRCasFinder	no	RT	RT,cas3,casR,DEDDh,DinG,csa3,WYL	Unclear	CACCCCAACTCGCATTGCTTGTAGAA	26	1	18	801792-801822|801792-801822|801792-801822|801792-801822|801792-801822|801792-801822|801792-801822|801792-801822|801792-801822|801792-801822|801792-801822|801792-801822|801792-801822|801792-801822|801792-801822|801792-801822|801792-801822|801792-801822	NZ_AP019712.1_940690-940720|NZ_AP019712.1_1945571-1945601|NZ_AP019712.1_919330-919300|NZ_AP019712.1_248402-248432|NZ_AP019712.1_248460-248490|NZ_AP019712.1_248518-248548|NZ_AP019712.1_851976-852006|NZ_AP019712.1_2283478-2283508|NZ_AP019712.1_874286-874256|NZ_AP019712.1_874389-874359|NZ_AP019712.1_2328493-2328463|NZ_AP019712.1_2497319-2497289|NZ_AP019712.1_812643-812673|NZ_AP019712.1_812698-812728|NZ_AP019712.1_1356858-1356888|NZ_AP019712.1_1401672-1401702|NZ_AP019712.1_2050051-2050081|NZ_AP019712.1_2731016-2731046	NA	1	1	Orphan	RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_AP019712.1_789002_789842_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_AP019712.1_790015_790666_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_AP019712.1_790662_790899_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_AP019712.1_791167_793153_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_AP019712.1_793160_796007_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_AP019712.1_796629_797562_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_AP019712.1_797567_798407_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_AP019712.1_798414_798900_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_AP019712.1_798907_800347_+	sd00006, TPR, Tetratricopeptide repeat	NA|312aa|up_0|NZ_AP019712.1_800413_801349_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_AP019712.1_802116_803028_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_AP019712.1_803024_804020_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_AP019712.1_804128_805073_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_AP019712.1_805642_806230_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	RT|429aa|down_4|NZ_AP019712.1_806779_808066_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|545aa|down_5|NZ_AP019712.1_808282_809917_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|301aa|down_6|NZ_AP019712.1_810123_811026_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_7|NZ_AP019712.1_811728_812358_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_8|NZ_AP019712.1_813358_814372_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_9|NZ_AP019712.1_814424_815435_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I
GCF_009731595.1_ASM973159v1	NZ_AP019712	Staphylococcus aureus strain Tokyo12480	5	812714-812872	1	PILER-CR	no	RT,casR	RT,cas3,casR,DEDDh,DinG,csa3,WYL	Unclear	AGCTTCTATGTTGGGGCCCACCCCAACTTGCACATTATTGTAAGCTGAC	49	0	0	NA	NA	NA	2	2	Unclear	RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA,NA|153aa|down_6|NZ_AP019712.1_820939_821398_+	NA|480aa|up_9|NZ_AP019712.1_798907_800347_+	sd00006, TPR, Tetratricopeptide repeat	NA|312aa|up_8|NZ_AP019712.1_800413_801349_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|up_7|NZ_AP019712.1_802116_803028_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|up_6|NZ_AP019712.1_803024_804020_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|up_5|NZ_AP019712.1_804128_805073_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|up_4|NZ_AP019712.1_805642_806230_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	RT|429aa|up_3|NZ_AP019712.1_806779_808066_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|545aa|up_2|NZ_AP019712.1_808282_809917_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|301aa|up_1|NZ_AP019712.1_810123_811026_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|up_0|NZ_AP019712.1_811728_812358_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_0|NZ_AP019712.1_813358_814372_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_1|NZ_AP019712.1_814424_815435_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_2|NZ_AP019712.1_815573_816764_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_3|NZ_AP019712.1_816885_817647_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|506aa|down_4|NZ_AP019712.1_817649_819167_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|435aa|down_5|NZ_AP019712.1_819296_820601_+	PRK00077, eno, enolase; Provisional	NA|153aa|down_6|NZ_AP019712.1_820939_821398_+	NA	NA|78aa|down_7|NZ_AP019712.1_821464_821698_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|247aa|down_8|NZ_AP019712.1_821826_822567_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|791aa|down_9|NZ_AP019712.1_822600_824973_+	TIGR02063, Ribonuclease_R, ribonuclease R
GCF_009731595.1_ASM973159v1	NZ_AP019712	Staphylococcus aureus strain Tokyo12480	6	874610-874690	5	CRISPRCasFinder	no		RT,cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	TCTTTATCATTTCTGTCCCACTCCC	25	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA|114aa|up_8|NZ_AP019712.1_867294_867636_+,NA|193aa|up_7|NZ_AP019712.1_867647_868226_+,NA|71aa|up_4|NZ_AP019712.1_869171_869384_+,NA|365aa|up_2|NZ_AP019712.1_870165_871260_+,NA|52aa|up_1|NZ_AP019712.1_872220_872376_+,NA|105aa|down_7|NZ_AP019712.1_882292_882607_-	NA|214aa|up_9|NZ_AP019712.1_866117_866759_+	pfam16560, SAPI, Putative mobile pathogenicity island	NA|114aa|up_8|NZ_AP019712.1_867294_867636_+	NA	NA|193aa|up_7|NZ_AP019712.1_867647_868226_+	NA	NA|73aa|up_6|NZ_AP019712.1_868243_868462_+	pfam16722, SAPIS-gp6, Pathogenicity island protein gp6 in Staphylococcus	NA|176aa|up_5|NZ_AP019712.1_868512_869040_+	COG5577, COG5577, Spore coat protein [Cell envelope biogenesis, outer membrane]	NA|71aa|up_4|NZ_AP019712.1_869171_869384_+	NA	NA|190aa|up_3|NZ_AP019712.1_869380_869950_+	COG3728, XtmA, Phage terminase, small subunit [DNA replication, recombination, and repair]	NA|365aa|up_2|NZ_AP019712.1_870165_871260_+	NA	NA|52aa|up_1|NZ_AP019712.1_872220_872376_+	NA	NA|186aa|up_0|NZ_AP019712.1_872731_873289_-	cd15783, SA1633_like, Uncharacterized protein family conserved in Staphylococci	NA|65aa|down_0|NZ_AP019712.1_874832_875027_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_1|NZ_AP019712.1_875260_876112_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_2|NZ_AP019712.1_876439_877201_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_3|NZ_AP019712.1_877298_878606_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_4|NZ_AP019712.1_878711_879962_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|155aa|down_5|NZ_AP019712.1_879951_880416_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|466aa|down_6|NZ_AP019712.1_880566_881964_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|105aa|down_7|NZ_AP019712.1_882292_882607_-	NA	NA|347aa|down_8|NZ_AP019712.1_882975_884016_+	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]	NA|356aa|down_9|NZ_AP019712.1_884029_885097_+	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
GCF_009731595.1_ASM973159v1	NZ_AP019712	Staphylococcus aureus strain Tokyo12480	7	1136791-1136871	6	CRISPRCasFinder	no	RT	RT,cas3,casR,DEDDh,DinG,csa3,WYL	Unclear	AGAATTTCGAATAGAAATTCTACA	24	1	1	1136815-1136847	NZ_AP019712.1_2075396-2075428	NA	1	1	Orphan	RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA|169aa|up_7|NZ_AP019712.1_1129276_1129783_+,NA|62aa|up_3|NZ_AP019712.1_1133157_1133343_-,NA|78aa|up_2|NZ_AP019712.1_1133952_1134186_-,NA|76aa|up_0|NZ_AP019712.1_1136368_1136596_+,NA|76aa|down_6|NZ_AP019712.1_1143860_1144088_+	NA|110aa|up_9|NZ_AP019712.1_1127520_1127850_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|135aa|up_8|NZ_AP019712.1_1128198_1128603_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|NZ_AP019712.1_1129276_1129783_+	NA	NA|166aa|up_6|NZ_AP019712.1_1130040_1130538_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|NZ_AP019712.1_1130689_1131040_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	RT|429aa|up_4|NZ_AP019712.1_1131595_1132882_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|62aa|up_3|NZ_AP019712.1_1133157_1133343_-	NA	NA|78aa|up_2|NZ_AP019712.1_1133952_1134186_-	NA	NA|320aa|up_1|NZ_AP019712.1_1134638_1135598_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|76aa|up_0|NZ_AP019712.1_1136368_1136596_+	NA	NA|239aa|down_0|NZ_AP019712.1_1137054_1137771_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_AP019712.1_1137879_1138605_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_AP019712.1_1138714_1139440_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_AP019712.1_1139869_1140871_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_AP019712.1_1140893_1141826_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_5|NZ_AP019712.1_1141996_1143553_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_AP019712.1_1143860_1144088_+	NA	NA|316aa|down_7|NZ_AP019712.1_1144404_1145352_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_AP019712.1_1145599_1145788_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NZ_AP019712.1_1146697_1146832_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_009731595.1_ASM973159v1	NZ_AP019712	Staphylococcus aureus strain Tokyo12480	8	1219954-1220101	2	PILER-CR	no	cas3	RT,cas3,casR,DEDDh,DinG,csa3,WYL	Unclear	CTGACTTTCCGCCAGCTTCTATGTTGGGGCCCCGCC	36	2	32	1219991-1220029|1219991-1220029|1219991-1220029|1219991-1220029|1219991-1220029|1219991-1220029|1219991-1220029|1219991-1220029|1219991-1220029|1219991-1220029|1220067-1220086|1220067-1220086|1220067-1220086|1220067-1220086|1220067-1220086|1220067-1220086|1220067-1220086|1220067-1220086|1220067-1220086|1220067-1220086|1220067-1220086|1220067-1220086|1220067-1220086|1220067-1220086|1220067-1220086|1220067-1220086|1220067-1220086|1220067-1220086|1220067-1220086|1220067-1220086|1220067-1220086|1220067-1220086	NZ_AP019712.1_874271-874309|NZ_AP019712.1_248417-248379|NZ_AP019712.1_248475-248437|NZ_AP019712.1_248533-248495|NZ_AP019712.1_1667513-1667475|NZ_AP019712.1_1945586-1945548|NZ_AP019712.1_2283493-2283455|NZ_AP019712.1_919315-919353|NZ_AP019712.1_2328478-2328516|NZ_AP019712.1_2497304-2497342|NZ_AP019712.1_248342-248323|NZ_AP019712.1_266545-266564|NZ_AP019712.1_852031-852012|NZ_AP019712.1_919390-919409|NZ_AP019712.1_1059799-1059780|NZ_AP019712.1_1220102-1220121|NZ_AP019712.1_1352449-1352468|NZ_AP019712.1_1633584-1633565|NZ_AP019712.1_1956136-1956117|NZ_AP019712.1_2075447-2075466|NZ_AP019712.1_2134350-2134369|NZ_AP019712.1_2460555-2460536|NZ_AP019712.1_2730903-2730884|NZ_AP019712.1_266433-266452|NZ_AP019712.1_801732-801713|NZ_AP019712.1_1356913-1356894|NZ_AP019712.1_1401726-1401707|NZ_AP019712.1_1633470-1633451|NZ_AP019712.1_1755588-1755607|NZ_AP019712.1_1902403-1902422|NZ_AP019712.1_2328553-2328572|NZ_AP019712.1_49898-49879	NA	2	2	Unclear	RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA,NA	NA|78aa|up_9|NZ_AP019712.1_1209324_1209558_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|up_8|NZ_AP019712.1_1209673_1210405_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|up_7|NZ_AP019712.1_1210551_1214118_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|up_6|NZ_AP019712.1_1214117_1215368_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|up_5|NZ_AP019712.1_1215354_1215687_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|up_4|NZ_AP019712.1_1215712_1217080_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|up_3|NZ_AP019712.1_1217514_1217790_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|up_2|NZ_AP019712.1_1217977_1218481_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|up_1|NZ_AP019712.1_1218480_1219218_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|up_0|NZ_AP019712.1_1219320_1219671_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|869aa|down_0|NZ_AP019712.1_1220196_1222803_-	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|295aa|down_1|NZ_AP019712.1_1223203_1224088_+	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|256aa|down_2|NZ_AP019712.1_1224071_1224839_+	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|389aa|down_3|NZ_AP019712.1_1224947_1226114_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|303aa|down_4|NZ_AP019712.1_1226135_1227044_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|412aa|down_5|NZ_AP019712.1_1228761_1229997_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|256aa|down_6|NZ_AP019712.1_1230008_1230776_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|692aa|down_7|NZ_AP019712.1_1232192_1234268_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|436aa|down_8|NZ_AP019712.1_1234423_1235731_+	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed	NA|299aa|down_9|NZ_AP019712.1_1236147_1237044_+	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC
GCF_009731595.1_ASM973159v1	NZ_AP019712	Staphylococcus aureus strain Tokyo12480	9	1442995-1443078	7	CRISPRCasFinder	no		RT,cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	CACCCCAACTCGCATTGCCTGTAGAA	26	1	4	1443021-1443052|1443021-1443052|1443021-1443052|1443021-1443052	NZ_AP019712.1_248402-248433|NZ_AP019712.1_248460-248491|NZ_AP019712.1_851976-852007|NZ_AP019712.1_812698-812729	NA	1	1	Orphan	RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA|68aa|up_5|NZ_AP019712.1_1434234_1434438_-,NA|66aa|down_0|NZ_AP019712.1_1443313_1443511_-	NA|379aa|up_9|NZ_AP019712.1_1428584_1429721_+	pfam05816, TelA, Toxic anion resistance protein (TelA)	NA|448aa|up_8|NZ_AP019712.1_1429794_1431138_-	COG1114, BrnQ, Branched-chain amino acid permeases [Amino acid transport and metabolism]	NA|629aa|up_7|NZ_AP019712.1_1431362_1433249_-	COG4548, NorD, Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]	NA|264aa|up_6|NZ_AP019712.1_1433262_1434054_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|68aa|up_5|NZ_AP019712.1_1434234_1434438_-	NA	NA|270aa|up_4|NZ_AP019712.1_1434466_1435276_-	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|424aa|up_3|NZ_AP019712.1_1435855_1437127_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|933aa|up_2|NZ_AP019712.1_1437140_1439939_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|452aa|up_1|NZ_AP019712.1_1440470_1441826_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|220aa|up_0|NZ_AP019712.1_1441822_1442482_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|66aa|down_0|NZ_AP019712.1_1443313_1443511_-	NA	NA|205aa|down_1|NZ_AP019712.1_1443627_1444242_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|357aa|down_2|NZ_AP019712.1_1444258_1445329_-	PRK12446, PRK12446, undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed	NA|170aa|down_3|NZ_AP019712.1_1445340_1445850_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|497aa|down_4|NZ_AP019712.1_1446248_1447739_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|74aa|down_5|NZ_AP019712.1_1447930_1448152_-	COG4479, COG4479, Uncharacterized protein conserved in bacteria [Function unknown]	NA|167aa|down_6|NZ_AP019712.1_1448151_1448652_-	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|143aa|down_7|NZ_AP019712.1_1448663_1449092_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|178aa|down_8|NZ_AP019712.1_1449084_1449618_-	PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional	NA|280aa|down_9|NZ_AP019712.1_1449699_1450539_-	TIGR00762, DegV, EDD domain protein, DegV family
GCF_009731595.1_ASM973159v1	NZ_AP019712	Staphylococcus aureus strain Tokyo12480	10	1753220-1753353	3	PILER-CR	no		RT,cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	TGCAAGTTGGGC------------TGGGGCCCCAAC------------------ATAGAGAA	62	1	19	1753252-1753276|1753252-1753276|1753252-1753276|1753252-1753276|1753252-1753276|1753252-1753276|1753252-1753276|1753252-1753276|1753252-1753276|1753252-1753276|1753252-1753276|1753252-1753276|1753252-1753276|1753252-1753276|1753252-1753276|1753252-1753276|1753252-1753276|1753252-1753276|1753252-1753276	NZ_AP019712.1_874377-874401|NZ_AP019712.1_1755632-1755656|NZ_AP019712.1_851988-851964|NZ_AP019712.1_940702-940678|NZ_AP019712.1_874274-874298|NZ_AP019712.1_919318-919342|NZ_AP019712.1_1136852-1136876|NZ_AP019712.1_2432484-2432508|NZ_AP019712.1_2497307-2497331|NZ_AP019712.1_248414-248390|NZ_AP019712.1_248472-248448|NZ_AP019712.1_248530-248506|NZ_AP019712.1_1356870-1356846|NZ_AP019712.1_1945583-1945559|NZ_AP019712.1_1956033-1956009|NZ_AP019712.1_2050063-2050039|NZ_AP019712.1_2283490-2283466|NZ_AP019712.1_2294238-2294214|NZ_AP019712.1_2731028-2731004	NA	2	2	Orphan	RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA,NA	NA|423aa|up_9|NZ_AP019712.1_1737731_1739000_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|374aa|up_8|NZ_AP019712.1_1739048_1740170_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|454aa|up_7|NZ_AP019712.1_1740517_1741879_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_6|NZ_AP019712.1_1742222_1743980_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|NZ_AP019712.1_1744001_1744970_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|NZ_AP019712.1_1745238_1746183_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|NZ_AP019712.1_1746182_1747040_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|NZ_AP019712.1_1747234_1748464_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|NZ_AP019712.1_1748912_1752110_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|NZ_AP019712.1_1752130_1753072_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|NZ_AP019712.1_1753441_1754740_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|NZ_AP019712.1_1754944_1755358_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|NZ_AP019712.1_1755863_1756553_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|NZ_AP019712.1_1756727_1757783_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|373aa|down_4|NZ_AP019712.1_1758097_1759216_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_5|NZ_AP019712.1_1759356_1759857_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_6|NZ_AP019712.1_1760103_1761306_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_7|NZ_AP019712.1_1761393_1762341_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_8|NZ_AP019712.1_1762463_1762958_-	PRK00522, tpx, thiol peroxidase	NA|257aa|down_9|NZ_AP019712.1_1763055_1763826_-	PRK10621, PRK10621, hypothetical protein; Provisional
GCF_009731595.1_ASM973159v1	NZ_AP019712	Staphylococcus aureus strain Tokyo12480	11	1755684-1755766	8	CRISPRCasFinder	no		RT,cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	GAAGCTGACGAAAAAGTCAGCTTAC	25	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA,NA	NA|454aa|up_9|NZ_AP019712.1_1740517_1741879_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_8|NZ_AP019712.1_1742222_1743980_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_7|NZ_AP019712.1_1744001_1744970_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_6|NZ_AP019712.1_1745238_1746183_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_5|NZ_AP019712.1_1746182_1747040_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_4|NZ_AP019712.1_1747234_1748464_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_3|NZ_AP019712.1_1748912_1752110_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_2|NZ_AP019712.1_1752130_1753072_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|up_1|NZ_AP019712.1_1753441_1754740_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|up_0|NZ_AP019712.1_1754944_1755358_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_0|NZ_AP019712.1_1755863_1756553_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_1|NZ_AP019712.1_1756727_1757783_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|373aa|down_2|NZ_AP019712.1_1758097_1759216_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_3|NZ_AP019712.1_1759356_1759857_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_4|NZ_AP019712.1_1760103_1761306_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_5|NZ_AP019712.1_1761393_1762341_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_6|NZ_AP019712.1_1762463_1762958_-	PRK00522, tpx, thiol peroxidase	NA|257aa|down_7|NZ_AP019712.1_1763055_1763826_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|408aa|down_8|NZ_AP019712.1_1763869_1765093_-	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|383aa|down_9|NZ_AP019712.1_1765092_1766241_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
GCF_009731595.1_ASM973159v1	NZ_AP019712	Staphylococcus aureus strain Tokyo12480	12	1844009-1844098	9	CRISPRCasFinder	no	csa3	RT,cas3,casR,DEDDh,DinG,csa3,WYL	Type I-A	AAGAAATTCTACAGGCAATGCGCGTTGGGGT	31	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA|75aa|up_5|NZ_AP019712.1_1840115_1840340_-,NA|148aa|up_2|NZ_AP019712.1_1841551_1841995_-,NA|101aa|down_1|NZ_AP019712.1_1845249_1845552_+	NA|501aa|up_9|NZ_AP019712.1_1835147_1836650_-	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|105aa|up_8|NZ_AP019712.1_1837292_1837607_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|431aa|up_7|NZ_AP019712.1_1837606_1838899_+	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	NA|285aa|up_6|NZ_AP019712.1_1838985_1839840_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|75aa|up_5|NZ_AP019712.1_1840115_1840340_-	NA	NA|157aa|up_4|NZ_AP019712.1_1840538_1841009_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|148aa|up_3|NZ_AP019712.1_1841121_1841565_+	pfam06338, ComK, ComK protein	NA|148aa|up_2|NZ_AP019712.1_1841551_1841995_-	NA	NA|212aa|up_1|NZ_AP019712.1_1842292_1842928_+	pfam02517, Abi, CAAX protease self-immunity	NA|207aa|up_0|NZ_AP019712.1_1843094_1843715_+	pfam02517, Abi, CAAX protease self-immunity	NA|238aa|down_0|NZ_AP019712.1_1844277_1844991_-	PRK12376, PRK12376, putative translaldolase; Provisional	NA|101aa|down_1|NZ_AP019712.1_1845249_1845552_+	NA	NA|122aa|down_2|NZ_AP019712.1_1845806_1846172_+	PRK14201, PRK14201, fluoride efflux transporter CrcB	NA|118aa|down_3|NZ_AP019712.1_1846168_1846522_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|278aa|down_4|NZ_AP019712.1_1846771_1847605_-	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|303aa|down_5|NZ_AP019712.1_1847816_1848725_-	pfam08378, NERD, Nuclease-related domain	NA|398aa|down_6|NZ_AP019712.1_1848849_1850043_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|531aa|down_7|NZ_AP019712.1_1850413_1852006_+	cd00484, PEPCK_ATP, Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis	NA|249aa|down_8|NZ_AP019712.1_1852300_1853047_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|158aa|down_9|NZ_AP019712.1_1853051_1853525_-	TIGR02705, conserved_hypothetical_protein, nucleoside triphosphatase YtkD
GCF_009731595.1_ASM973159v1	NZ_AP019712	Staphylococcus aureus strain Tokyo12480	13	2178835-2178985	10	CRISPRCasFinder	no	csa3	RT,cas3,casR,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_AP019712.1_2173707_2173938_-,NA|364aa|up_0|NZ_AP019712.1_2177725_2178817_+,NA|35aa|down_0|NZ_AP019712.1_2179315_2179420_-,NA|53aa|down_1|NZ_AP019712.1_2180099_2180258_+	NA|237aa|up_9|NZ_AP019712.1_2169316_2170027_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_AP019712.1_2170147_2170591_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_AP019712.1_2170791_2171205_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_AP019712.1_2171662_2173036_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_AP019712.1_2173707_2173938_-	NA	NA|313aa|up_4|NZ_AP019712.1_2173968_2174907_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_AP019712.1_2175340_2176006_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_AP019712.1_2176157_2176478_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_AP019712.1_2176479_2177460_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_AP019712.1_2177725_2178817_+	NA	NA|35aa|down_0|NZ_AP019712.1_2179315_2179420_-	NA	NA|53aa|down_1|NZ_AP019712.1_2180099_2180258_+	NA	NA|286aa|down_2|NZ_AP019712.1_2180915_2181773_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_AP019712.1_2181840_2182623_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_AP019712.1_2182854_2184660_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_AP019712.1_2185340_2186879_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_AP019712.1_2186913_2189046_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_AP019712.1_2189057_2189492_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_AP019712.1_2189491_2190598_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_9|NZ_AP019712.1_2198593_2199949_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_009731595.1_ASM973159v1	NZ_AP019712	Staphylococcus aureus strain Tokyo12480	14	2445173-2445267	11	CRISPRCasFinder	no		RT,cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	TTCTTCAAATTTATTTGTTAGAAAGGC	27	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA|35aa|up_2|NZ_AP019712.1_2442894_2442999_+,NA|40aa|down_0|NZ_AP019712.1_2445445_2445565_-	NA|200aa|up_9|NZ_AP019712.1_2436371_2436971_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NZ_AP019712.1_2436989_2437352_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NZ_AP019712.1_2437606_2438857_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NZ_AP019712.1_2438953_2439685_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NZ_AP019712.1_2439681_2440401_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NZ_AP019712.1_2440381_2441161_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NZ_AP019712.1_2441281_2442721_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NZ_AP019712.1_2442894_2442999_+	NA	NA|229aa|up_1|NZ_AP019712.1_2443152_2443839_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NZ_AP019712.1_2444165_2445032_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|40aa|down_0|NZ_AP019712.1_2445445_2445565_-	NA	NA|437aa|down_1|NZ_AP019712.1_2445659_2446970_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NZ_AP019712.1_2447460_2448390_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NZ_AP019712.1_2448957_2449905_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NZ_AP019712.1_2449906_2450884_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NZ_AP019712.1_2450935_2451403_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NZ_AP019712.1_2451413_2452106_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NZ_AP019712.1_2452116_2453232_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NZ_AP019712.1_2453209_2454217_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NZ_AP019712.1_2454218_2455577_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
