assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009730655.1_ASM973065v1	NZ_CP046378	Shewanella algae strain RQs-106 chromosome, complete genome	1	548223-553614	1,1,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	csa3,cas3,WYL,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,DEDDh	Type I-F	GTTCACTGCCGCCCAGGCAGCTTAGAAA,GTTCACTGCCGCCCAGGCAGCTTAGAAA,GTTCACTGCCGCCCAGGCAGCTTAGAAA,GTTCACTGCCGCCCAGGCAGCTTAGAAA	28,28,28,28	0	0	NA	NA	I-F:I-F:I-F:I-F	87,89,89,87	89	TypeI-F	csa3,cas3,WYL,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,DEDDh	NA,NA	NA|821aa|up_9|NZ_CP046378.1_530825_533288_+	COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism]	NA|589aa|up_8|NZ_CP046378.1_533346_535113_+	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|950aa|up_7|NZ_CP046378.1_535114_537964_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	WYL|264aa|up_6|NZ_CP046378.1_538224_539016_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	cas1|322aa|up_5|NZ_CP046378.1_539129_540095_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3-cas2|1138aa|up_4|NZ_CP046378.1_540477_543891_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|507aa|up_3|NZ_CP046378.1_543868_545389_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|338aa|up_2|NZ_CP046378.1_545382_546396_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|339aa|up_1|NZ_CP046378.1_546405_547422_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|213aa|up_0|NZ_CP046378.1_547433_548072_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|762aa|down_0|NZ_CP046378.1_553732_556018_-	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|1881aa|down_1|NZ_CP046378.1_556014_561657_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|102aa|down_2|NZ_CP046378.1_561944_562250_-	PRK00430, fis, DNA-binding transcriptional regulator Fis	NA|324aa|down_3|NZ_CP046378.1_562264_563236_-	PRK10415, PRK10415, tRNA-dihydrouridine synthase B; Provisional	NA|294aa|down_4|NZ_CP046378.1_563388_564270_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|242aa|down_5|NZ_CP046378.1_564621_565347_+	PRK13554, PRK13554, fumarate reductase cytochrome b-556 subunit; Provisional	NA|222aa|down_6|NZ_CP046378.1_565477_566143_+	cd00581, QFR_TypeB_TM, Quinol:fumarate reductase (QFR) Type B subfamily, transmembrane subunit;  QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinone oxidoreductase (SQR)	NA|676aa|down_7|NZ_CP046378.1_566208_568236_+	PRK08626, PRK08626, fumarate reductase flavoprotein subunit; Provisional	NA|243aa|down_8|NZ_CP046378.1_568232_568961_+	PRK13552, frdB, fumarate reductase iron-sulfur subunit; Provisional	NA|432aa|down_9|NZ_CP046378.1_569079_570375_-	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional
GCF_009730655.1_ASM973065v1	NZ_CP046378	Shewanella algae strain RQs-106 chromosome, complete genome	2	3003271-3003396	2	CRISPRCasFinder	no		csa3,cas3,WYL,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,DEDDh	Orphan	TGAGCTTTGATGGGTATTTCAAAGCCTAGTCAAGACTGTG	40	1	1	3003311-3003356	NZ_CP046378.1_4197520-4197565	NA	1	1	Orphan	csa3,cas3,WYL,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,DEDDh	NA|202aa|up_5|NZ_CP046378.1_2994275_2994881_-,NA|212aa|up_4|NZ_CP046378.1_2995087_2995723_-,NA|330aa|up_0|NZ_CP046378.1_3002267_3003257_-,NA|248aa|down_1|NZ_CP046378.1_3004198_3004942_-,NA|322aa|down_2|NZ_CP046378.1_3005589_3006555_-	NA|823aa|up_9|NZ_CP046378.1_2988428_2990897_-	TIGR03502, lipase_Pla1_cef, extracellular lipase, Pla-1/cef family	NA|246aa|up_8|NZ_CP046378.1_2991158_2991896_+	PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional	NA|322aa|up_7|NZ_CP046378.1_2991991_2992957_+	cd06231, M14_REP34-like, Peptidase M14-like domain similar to rapid encystment phenotype 34 (REP34)	NA|175aa|up_6|NZ_CP046378.1_2993308_2993833_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|202aa|up_5|NZ_CP046378.1_2994275_2994881_-	NA	NA|212aa|up_4|NZ_CP046378.1_2995087_2995723_-	NA	NA|466aa|up_3|NZ_CP046378.1_2996482_2997880_-	NF033189, internalin_A, class 1 internalin InlA	NA|466aa|up_2|NZ_CP046378.1_2998373_2999771_-	NF033189, internalin_A, class 1 internalin InlA	NA|466aa|up_1|NZ_CP046378.1_3000233_3001631_-	NF033189, internalin_A, class 1 internalin InlA	NA|330aa|up_0|NZ_CP046378.1_3002267_3003257_-	NA	NA|176aa|down_0|NZ_CP046378.1_3003520_3004048_-	pfam03691, UPF0167, Uncharacterized protein family (UPF0167)	NA|248aa|down_1|NZ_CP046378.1_3004198_3004942_-	NA	NA|322aa|down_2|NZ_CP046378.1_3005589_3006555_-	NA	NA|291aa|down_3|NZ_CP046378.1_3006848_3007721_-	PRK10700, PRK10700, 23S rRNA pseudouridine(2605) synthase RluB	NA|197aa|down_4|NZ_CP046378.1_3007721_3008312_-	pfam04079, SMC_ScpB, Segregation and condensation complex subunit ScpB	NA|264aa|down_5|NZ_CP046378.1_3008323_3009115_-	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication,    recombination, and repair]	NA|207aa|down_6|NZ_CP046378.1_3009192_3009813_-	PRK11630, PRK11630, threonylcarbamoyl-AMP synthase	NA|287aa|down_7|NZ_CP046378.1_3009809_3010670_-	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|520aa|down_8|NZ_CP046378.1_3011025_3012585_+	PRK13564, PRK13564, anthranilate synthase component 1	NA|201aa|down_9|NZ_CP046378.1_3012581_3013184_+	PRK05670, PRK05670, anthranilate synthase component II; Provisional
GCF_009730655.1_ASM973065v1	NZ_CP046378	Shewanella algae strain RQs-106 chromosome, complete genome	3	4251049-4251151	3	CRISPRCasFinder	no	DEDDh	csa3,cas3,WYL,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,DEDDh	Unclear	TACCAACTGAGCTAATGTCGCAT	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,DEDDh	NA|59aa|up_1|NZ_CP046378.1_4249672_4249849_+,NA	NA|380aa|up_9|NZ_CP046378.1_4240587_4241727_-	PRK10930, PRK10930, FtsH protease activity modulator HflK	NA|436aa|up_8|NZ_CP046378.1_4241762_4243070_-	PRK11058, PRK11058, GTPase HflX; Provisional	NA|92aa|up_7|NZ_CP046378.1_4243090_4243366_-	PRK00395, hfq, RNA-binding protein Hfq; Provisional	NA|309aa|up_6|NZ_CP046378.1_4243453_4244380_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|621aa|up_5|NZ_CP046378.1_4244372_4246235_-	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|442aa|up_4|NZ_CP046378.1_4246242_4247568_-	PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II; Provisional	NA|161aa|up_3|NZ_CP046378.1_4247554_4248037_-	PRK10646, PRK10646, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA|495aa|up_2|NZ_CP046378.1_4248075_4249560_-	PRK10565, PRK10565, putative carbohydrate kinase; Provisional	NA|59aa|up_1|NZ_CP046378.1_4249672_4249849_+	NA	NA|152aa|up_0|NZ_CP046378.1_4249981_4250437_-	cd01045, Ferritin_like_AB, Uncharacterized family of ferritin-like proteins found in archaea and bacteria	DEDDh|182aa|down_0|NZ_CP046378.1_4251386_4251932_-	PRK05359, PRK05359, oligoribonuclease; Provisional	NA|355aa|down_1|NZ_CP046378.1_4252044_4253109_+	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA	NA|288aa|down_2|NZ_CP046378.1_4253140_4254004_+	PRK00044, psd, phosphatidylserine decarboxylase; Reviewed	NA|297aa|down_3|NZ_CP046378.1_4254006_4254897_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|1068aa|down_4|NZ_CP046378.1_4254972_4258176_+	PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional	NA|240aa|down_5|NZ_CP046378.1_4258182_4258902_+	cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins	NA|111aa|down_6|NZ_CP046378.1_4258934_4259267_-	pfam11872, DUF3392, Protein of unknown function (DUF3392)	NA|309aa|down_7|NZ_CP046378.1_4259315_4260242_+	cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase	NA|528aa|down_8|NZ_CP046378.1_4260252_4261836_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|64aa|down_9|NZ_CP046378.1_4262141_4262333_+	cd19945, Fer2_BFD, bacterioferritin-associated ferredoxin (BFD) [2Fe-2S]-binding domain
GCF_009730655.1_ASM973065v1	NZ_CP046378	Shewanella algae strain RQs-106 chromosome, complete genome	4	4885515-4885784	3,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas5f,cas7f,cas6f	csa3,cas3,WYL,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,DEDDh	Unclear	AGTGAACTGCCGAATAGGCAGCTGAAGAT,AGTGAACTGCCGAATAGGCAGCTGAAGAT,AGTGAACTGCCGAATAGGCAGCTGAAGAT	29,29,29	0	0	NA	NA	NA:NA:NA	3,4,3	4	Unclear	csa3,cas3,WYL,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,DEDDh	NA|2083aa|up_9|NZ_CP046378.1_4870727_4876976_+,NA|221aa|up_8|NZ_CP046378.1_4876953_4877616_+,NA|175aa|up_6|NZ_CP046378.1_4878324_4878849_+,NA|753aa|down_0|NZ_CP046378.1_4885929_4888188_+	NA|2083aa|up_9|NZ_CP046378.1_4870727_4876976_+	NA	NA|221aa|up_8|NZ_CP046378.1_4876953_4877616_+	NA	NA|116aa|up_7|NZ_CP046378.1_4877806_4878154_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|175aa|up_6|NZ_CP046378.1_4878324_4878849_+	NA	NA|148aa|up_5|NZ_CP046378.1_4878852_4879296_+	smart00487, DEXDc, DEAD-like helicases superfamily	NA|301aa|up_4|NZ_CP046378.1_4879325_4880228_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|412aa|up_3|NZ_CP046378.1_4880364_4881600_+	pfam06527, TniQ, TniQ	cas5f|702aa|up_2|NZ_CP046378.1_4881593_4883699_+	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas7f|348aa|up_1|NZ_CP046378.1_4883707_4884751_+	cd09737, Csy3_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy3	cas6f|206aa|up_0|NZ_CP046378.1_4884768_4885386_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|753aa|down_0|NZ_CP046378.1_4885929_4888188_+	NA	NA|364aa|down_1|NZ_CP046378.1_4888349_4889441_-	pfam00672, HAMP, HAMP domain	NA|439aa|down_2|NZ_CP046378.1_4889531_4890848_-	PRK09467, envZ, osmolarity sensor protein; Provisional	NA|242aa|down_3|NZ_CP046378.1_4890844_4891570_-	PRK09468, ompR, osmolarity response regulator; Provisional	NA|363aa|down_4|NZ_CP046378.1_4891705_4892794_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|231aa|down_5|NZ_CP046378.1_4892787_4893480_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|256aa|down_6|NZ_CP046378.1_4893496_4894264_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|262aa|down_7|NZ_CP046378.1_4894423_4895209_+	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional	NA|165aa|down_8|NZ_CP046378.1_4895335_4895830_+	PRK01885, greB, transcription elongation factor GreB; Reviewed	NA|121aa|down_9|NZ_CP046378.1_4895902_4896265_+	pfam05154, TM2, TM2 domain
