assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009730575.1_ASM973057v1	NZ_CP046329	Shewanella putrefaciens strain FDAARGOS_681 chromosome, complete genome	1	3160308-3160427	1	CRISPRCasFinder	no		RT,csa3,TnsE_C,DEDDh,cas3,DinG,cas6f,cas5,cas7f,cas3f,cas1,WYL	Orphan	ATAAAGGTATCGTCTCTTAACCTTTATCAACTGAGCTAAT	40	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,TnsE_C,DEDDh,cas3,DinG,cas6f,cas5,cas7f,cas3f,cas1,WYL	NA|149aa|up_2|NZ_CP046329.1_3156730_3157177_+,NA	NA|53aa|up_9|NZ_CP046329.1_3143897_3144056_-	pfam06796, NapE, Periplasmic nitrate reductase protein NapE	NA|1294aa|up_8|NZ_CP046329.1_3144579_3148461_-	TIGR01967, ATP-dependent_RNA_helicase_HrpA, RNA helicase HrpA	NA|139aa|up_7|NZ_CP046329.1_3148555_3148972_-	cd04629, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria	NA|344aa|up_6|NZ_CP046329.1_3149094_3150126_-	pfam01112, Asparaginase_2, Asparaginase	NA|618aa|up_5|NZ_CP046329.1_3150246_3152100_+	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|1306aa|up_4|NZ_CP046329.1_3152096_3156014_+	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|96aa|up_3|NZ_CP046329.1_3156153_3156441_-	PRK05943, PRK05943, 50S ribosomal protein L25; Reviewed	NA|149aa|up_2|NZ_CP046329.1_3156730_3157177_+	NA	NA|183aa|up_1|NZ_CP046329.1_3157127_3157676_-	pfam05951, Peptidase_M15_2, Bacterial protein of unknown function (DUF882)	NA|485aa|up_0|NZ_CP046329.1_3157799_3159254_-	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown]	NA|478aa|down_0|NZ_CP046329.1_3160800_3162234_-	PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase; Reviewed	NA|296aa|down_1|NZ_CP046329.1_3162437_3163325_+	pfam11207, DUF2989, Protein of unknown function (DUF2989)	NA|337aa|down_2|NZ_CP046329.1_3163531_3164542_+	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|361aa|down_3|NZ_CP046329.1_3164700_3165783_-	PRK09375, PRK09375, quinolinate synthase NadA	NA|541aa|down_4|NZ_CP046329.1_3165915_3167538_-	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed	NA|326aa|down_5|NZ_CP046329.1_3167547_3168525_-	PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase; Provisional	NA|393aa|down_6|NZ_CP046329.1_3168528_3169707_-	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)	NA|345aa|down_7|NZ_CP046329.1_3169869_3170904_-	PRK05324, PRK05324, succinylglutamate desuccinylase; Provisional	NA|160aa|down_8|NZ_CP046329.1_3171200_3171680_+	pfam01625, PMSR, Peptide methionine sulfoxide reductase	NA|551aa|down_9|NZ_CP046329.1_3171763_3173416_-	cd05801, PGM_like3, This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily
GCF_009730575.1_ASM973057v1	NZ_CP046329	Shewanella putrefaciens strain FDAARGOS_681 chromosome, complete genome	2	3182959-3183063	2	CRISPRCasFinder	no		RT,csa3,TnsE_C,DEDDh,cas3,DinG,cas6f,cas5,cas7f,cas3f,cas1,WYL	Orphan	AGGAAAACTATGAGTCACTTATTTGCCC	28	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,TnsE_C,DEDDh,cas3,DinG,cas6f,cas5,cas7f,cas3f,cas1,WYL	NA|274aa|up_2|NZ_CP046329.1_3178344_3179166_-,NA	NA|186aa|up_9|NZ_CP046329.1_3173462_3174020_-	PRK11187, PRK11187, replication initiation negative regulator SeqA	NA|259aa|up_8|NZ_CP046329.1_3174302_3175079_+	PRK10673, PRK10673, esterase	NA|74aa|up_7|NZ_CP046329.1_3175180_3175402_+	pfam10981, DUF2788, Protein of unknown function (DUF2788)	NA|91aa|up_6|NZ_CP046329.1_3175413_3175686_+	PRK11675, PRK11675, LexA regulated protein; Provisional	NA|176aa|up_5|NZ_CP046329.1_3175742_3176270_+	PRK09267, PRK09267, flavodoxin FldA; Validated	NA|393aa|up_4|NZ_CP046329.1_3176379_3177558_+	pfam10093, EarP, Elongation-Factor P (EF-P) rhamnosyltransferase EarP	NA|187aa|up_3|NZ_CP046329.1_3177602_3178163_+	PRK00529, PRK00529, elongation factor P; Validated	NA|274aa|up_2|NZ_CP046329.1_3178344_3179166_-	NA	NA|461aa|up_1|NZ_CP046329.1_3179379_3180762_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|405aa|up_0|NZ_CP046329.1_3181547_3182762_+	PRK09265, PRK09265, aminotransferase AlaT; Validated	NA|450aa|down_0|NZ_CP046329.1_3183657_3185007_+	PRK05318, PRK05318, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional	NA|214aa|down_1|NZ_CP046329.1_3185196_3185838_-	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	NA|609aa|down_2|NZ_CP046329.1_3185857_3187684_-	PRK09054, PRK09054, phosphogluconate dehydratase; Validated	NA|233aa|down_3|NZ_CP046329.1_3187708_3188407_-	cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate	NA|491aa|down_4|NZ_CP046329.1_3188416_3189889_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|285aa|down_5|NZ_CP046329.1_3190199_3191054_+	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional	NA|480aa|down_6|NZ_CP046329.1_3191238_3192678_+	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|760aa|down_7|NZ_CP046329.1_3192831_3195111_-	PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed	NA|214aa|down_8|NZ_CP046329.1_3195123_3195765_-	pfam17939, TetR_C_30, Tetracyclin repressor-like, C-terminal domain	NA|197aa|down_9|NZ_CP046329.1_3196041_3196632_-	NF033154, endonuc_SmrA, DNA endonuclease SmrA
GCF_009730575.1_ASM973057v1	NZ_CP046329	Shewanella putrefaciens strain FDAARGOS_681 chromosome, complete genome	3	3243244-3248134	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	DinG,cas6f,cas5,cas7f,cas3f,cas1	RT,csa3,TnsE_C,DEDDh,cas3,DinG,cas6f,cas5,cas7f,cas3f,cas1,WYL	Unclear	TTTCTAAGCCGCCTGTGCGGCGGTGAAC,TTTCTAAGCCGCCTGTGCGGCGGTGAAC,TTTCTAAGCCGCCTGTGCGGCGGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	81,81,32	81	Unclear	RT,csa3,TnsE_C,DEDDh,cas3,DinG,cas6f,cas5,cas7f,cas3f,cas1,WYL	NA,cas5|337aa|down_1|NZ_CP046329.1_3248824_3249835_-,cas7f|316aa|down_2|NZ_CP046329.1_3249843_3250791_-,NA|65aa|down_5|NZ_CP046329.1_3254862_3255057_+	NA|339aa|up_9|NZ_CP046329.1_3229527_3230544_+	cd02197, HypE, HypE (Hydrogenase expression/formation protein)	NA|116aa|up_8|NZ_CP046329.1_3230543_3230891_+	pfam01155, HypA, Hydrogenase/urease nickel incorporation, metallochaperone, hypA	NA|314aa|up_7|NZ_CP046329.1_3231027_3231969_-	PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated	NA|99aa|up_6|NZ_CP046329.1_3232065_3232362_-	PRK00285, ihfA, integration host factor subunit alpha; Reviewed	NA|796aa|up_5|NZ_CP046329.1_3232365_3234753_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|328aa|up_4|NZ_CP046329.1_3234768_3235752_-	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|503aa|up_3|NZ_CP046329.1_3236276_3237785_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|662aa|up_2|NZ_CP046329.1_3237974_3239960_+	COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism]	NA|97aa|up_1|NZ_CP046329.1_3240546_3240837_+	pfam14537, Cytochrom_c3_2, Cytochrome c3	DinG|634aa|up_0|NZ_CP046329.1_3241010_3242912_-	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	cas6f|184aa|down_0|NZ_CP046329.1_3248264_3248816_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas5|337aa|down_1|NZ_CP046329.1_3248824_3249835_-	NA	cas7f|316aa|down_2|NZ_CP046329.1_3249843_3250791_-	NA	cas3f|979aa|down_3|NZ_CP046329.1_3250794_3253731_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas1|326aa|down_4|NZ_CP046329.1_3253743_3254721_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|65aa|down_5|NZ_CP046329.1_3254862_3255057_+	NA	NA|301aa|down_6|NZ_CP046329.1_3255163_3256066_-	cd08476, PBP2_CrgA_like_7, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|398aa|down_7|NZ_CP046329.1_3256193_3257387_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|406aa|down_8|NZ_CP046329.1_3257383_3258601_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|383aa|down_9|NZ_CP046329.1_3258603_3259752_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
