The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP046327	Clostridioides difficile strain FDAARGOS_723 chromosome, complete genome	4178106	1271928	1327059	4178106	integrase,holin,portal,plate,tail,terminase	Clostridium_phage(78.57%)	68	1314642:1314659	1330707:1330724
WP_003433687.1|1271928_1272114_+	hypothetical protein	NA	A0A0A8WHQ4	Clostridium_phage	62.1	7.6e-13
WP_009893147.1|1272154_1274554_-	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
WP_009889444.1|1274647_1275460_-	N-acetylmuramoyl-L-alanine amidase	NA	X5JAJ5	Clostridium_phage	97.4	9.7e-153
WP_003429958.1|1275538_1276402_-	Abi family protein	NA	A3QSC6	Clostridium_virus	99.7	8.4e-163
WP_009889440.1|1276662_1276920_-|holin	holin	holin	A3QSC5	Clostridium_virus	100.0	1.1e-41
WP_009889435.1|1276923_1277214_-	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	95.8	6.9e-45
WP_009889434.1|1277244_1277811_-	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	77.8	3.6e-37
WP_009889431.1|1277844_1278027_-	hypothetical protein	NA	A3QSC3	Clostridium_virus	95.0	5.5e-24
WP_009889429.1|1278026_1278320_-	hypothetical protein	NA	E2ELK3	Clostridium_phage	77.9	2.2e-38
WP_009893144.1|1278334_1279861_-	hypothetical protein	NA	B6SBV0	Clostridium_virus	60.8	1.3e-89
WP_009888853.1|1279877_1280903_-|tail	phage tail protein	tail	A3QSB7	Clostridium_virus	87.8	9.1e-140
WP_003433579.1|1280914_1281532_-	YmfQ family protein	NA	A0A0A8WII4	Clostridium_phage	98.0	8.8e-114
WP_009888852.1|1281524_1282574_-|plate	baseplate J/gp47 family protein	plate	A0A0A8WFK0	Clostridium_phage	94.8	1.0e-186
WP_009888851.1|1282574_1282994_-	DUF2634 domain-containing protein	NA	A0A0A8WJV8	Clostridium_phage	95.7	1.3e-71
WP_009893142.1|1282998_1283259_-	DUF2577 domain-containing protein	NA	A0A0A8WJ65	Clostridium_phage	86.0	1.4e-33
WP_009893140.1|1283272_1285165_-	cell wall hydrolase	NA	A3QSB3	Clostridium_virus	94.8	0.0e+00
WP_009888849.1|1285157_1285847_-	LysM peptidoglycan-binding domain-containing protein	NA	X5J9Z8	Clostridium_phage	94.8	2.0e-119
WP_009893138.1|1285863_1288236_-	tape measure protein	NA	X5JAB7	Clostridium_phage	41.5	8.8e-146
WP_009888848.1|1288301_1289069_-	DUF4428 domain-containing protein	NA	X5JB37	Clostridium_phage	44.4	6.3e-45
WP_009888847.1|1289206_1289734_-	DUF4352 domain-containing protein	NA	A0A0A8WJ63	Clostridium_phage	97.1	8.7e-62
WP_009888846.1|1290411_1290546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888845.1|1290598_1291465_-	hypothetical protein	NA	X5JAW1	Clostridium_phage	80.1	3.2e-130
WP_003429858.1|1291583_1291772_-	hypothetical protein	NA	X5JAJ2	Clostridium_phage	96.8	2.2e-23
WP_003429855.1|1293108_1293270_-	hypothetical protein	NA	A0A0A8WE04	Clostridium_phage	84.3	1.2e-14
WP_011861033.1|1293416_1293611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003429853.1|1293610_1294051_-|portal	phage portal protein	portal	X5JAB6	Clostridium_phage	63.7	8.6e-47
WP_009888843.1|1294122_1294950_-	hypothetical protein	NA	A0A2R4P8H7	Staphylococcus_phage	48.3	1.8e-45
WP_009888842.1|1295008_1295479_-|tail	phage tail tube protein	tail	A0A0A8WJ62	Clostridium_phage	81.3	1.3e-69
WP_009893136.1|1295495_1296806_-	hypothetical protein	NA	X5JAJ1	Clostridium_phage	92.7	8.1e-234
WP_009888840.1|1296806_1296983_-	hypothetical protein	NA	X5J9Z6	Clostridium_phage	93.1	1.1e-21
WP_009888839.1|1296975_1297413_-	hypothetical protein	NA	A0A0A8WJT3	Clostridium_phage	95.2	3.3e-75
WP_009888838.1|1297761_1298568_-	hypothetical protein	NA	F8UBL7	Clostridium_phage	48.0	2.4e-47
WP_009893135.1|1298677_1298968_-	HK97 gp10 family phage protein	NA	A0A0A8WFV8	Clostridium_phage	96.7	4.1e-45
WP_003433540.1|1298967_1299315_-	hypothetical protein	NA	X5JAV9	Clostridium_phage	99.1	1.1e-57
WP_009888836.1|1299308_1299710_-	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
WP_009888835.1|1299719_1299953_-	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	93.5	4.6e-31
WP_009888834.1|1299971_1300862_-	hypothetical protein	NA	X5J9Z5	Clostridium_phage	99.3	1.4e-165
WP_009888833.1|1300873_1301437_-	scaffold protein	NA	A0A0A8WFU8	Clostridium_phage	93.6	6.0e-85
WP_009888832.1|1301504_1301753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009893134.1|1301754_1303290_-	hypothetical protein	NA	X5JAI9	Clostridium_phage	71.9	2.5e-194
WP_009888831.1|1303279_1304722_-|portal	phage portal protein	portal	A0A0A8WIH2	Clostridium_phage	97.7	3.0e-274
WP_009888830.1|1304727_1305969_-|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	98.3	1.1e-243
WP_009888829.1|1305958_1306651_-	helix-turn-helix domain-containing protein	NA	A0A0A8WFS6	Clostridium_phage	97.0	7.0e-120
WP_003429834.1|1306720_1307230_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888827.1|1307250_1308225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888825.1|1309251_1309731_-	hypothetical protein	NA	I2E8Y5	Clostridium_phage	51.0	4.4e-36
WP_009888823.1|1309884_1311255_-	DEAD/DEAH box helicase	NA	A0A1S7FYY5	Listeria_phage	60.0	8.4e-157
WP_003433522.1|1311203_1311530_-	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	55.4	8.7e-20
WP_009888822.1|1311811_1314229_-	virulence-associated protein E	NA	A0A0A7RTG3	Clostridium_phage	67.7	0.0e+00
WP_009888821.1|1314240_1316199_-	DNA polymerase	NA	A0A0A7RTL3	Clostridium_phage	69.1	7.8e-265
1314642:1314659	attL	TATAAATAAATTTAATCC	NA	NA	NA	NA
WP_003433516.1|1316198_1316771_-	DUF2815 family protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
WP_003429822.1|1316793_1317366_-	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA	NA
WP_009888819.1|1317418_1317754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888818.1|1317768_1318935_-	DUF2800 domain-containing protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.5e-117
WP_003433513.1|1318946_1319384_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003429817.1|1319454_1319604_-	hypothetical protein	NA	A0A0A8WIF8	Clostridium_phage	89.4	4.2e-14
WP_009888815.1|1319584_1319977_-	helix-turn-helix domain-containing protein	NA	A0A0A8WHS2	Clostridium_phage	93.0	9.6e-58
WP_009888813.1|1320007_1320205_-	helix-turn-helix transcriptional regulator	NA	A0A0A8WE47	Clostridium_phage	92.3	2.9e-26
WP_003433505.1|1320280_1320655_+	hypothetical protein	NA	A0A1L5C299	Pseudoalteromonas_phage	37.1	2.2e-11
WP_009888812.1|1320664_1320874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888810.1|1320920_1321730_-	phage antirepressor	NA	A0A0A8WIE3	Clostridium_phage	97.4	1.0e-146
WP_009893129.1|1321777_1321981_-	helix-turn-helix domain-containing protein	NA	A0A0A8WHR3	Clostridium_phage	100.0	3.7e-29
WP_009888806.1|1322157_1322499_+	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	100.0	7.6e-59
WP_009893126.1|1322510_1323059_+	helix-turn-helix domain-containing protein	NA	A0A0A8WJ60	Clostridium_phage	98.4	2.2e-92
WP_003429804.1|1323134_1323641_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
WP_009888801.1|1324260_1325130_+	protein kinase	NA	NA	NA	NA	NA
WP_009888800.1|1325142_1325850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429803.1|1325928_1327059_+|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	99.7	2.9e-216
1330707:1330724	attR	GGATTAAATTTATTTATA	NA	NA	NA	NA
>prophage 2
NZ_CP046327	Clostridioides difficile strain FDAARGOS_723 chromosome, complete genome	4178106	1454473	1463018	4178106		Pandoravirus(33.33%)	10	NA	NA
WP_009893065.1|1454473_1456264_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.8	5.6e-52
WP_009893063.1|1456518_1457304_-	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.0e-13
WP_009889259.1|1457284_1457791_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_009889257.1|1457783_1458149_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_012816129.1|1458159_1458963_-	dihydropteroate synthase	NA	S4W084	Pandoravirus	28.6	2.4e-23
WP_003429416.1|1459016_1459589_-	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
WP_009889253.1|1459614_1460316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438634.1|1460349_1461093_-	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
WP_074014342.1|1461082_1462441_-	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	41.2	3.0e-37
WP_009889249.1|1462433_1463018_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	4.2e-57
>prophage 3
NZ_CP046327	Clostridioides difficile strain FDAARGOS_723 chromosome, complete genome	4178106	1545710	1595223	4178106	integrase,portal,tail,plate	Clostridium_phage(50.0%)	51	1542266:1542282	1603436:1603452
1542266:1542282	attL	AAAGAAGATATATTAAA	NA	NA	NA	NA
WP_009889162.1|1545710_1546109_+	helix-turn-helix domain-containing protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
WP_003428145.1|1546325_1546547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003428146.1|1546566_1546776_-	helix-turn-helix transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
WP_003438466.1|1547074_1547494_+	helix-turn-helix transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
WP_003419674.1|1547721_1548177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003419670.1|1548401_1548662_-	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
WP_009889155.1|1548924_1549278_-	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	4.2e-12
WP_009892995.1|1549294_1554472_-	chromosome condensation regulator	NA	A0A0A8WEY5	Clostridium_phage	28.3	8.2e-88
WP_009889153.1|1554493_1555480_-|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	3.4e-59
WP_009889149.1|1555480_1556179_-	DUF2313 domain-containing protein	NA	A0A090D815	Clostridium_phage	56.9	3.3e-48
WP_009889148.1|1556175_1557228_-|plate	baseplate J/gp47 family protein	plate	A0A0A8WFP3	Clostridium_phage	71.3	9.3e-140
WP_003428161.1|1557220_1557649_-	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
WP_003438447.1|1557648_1557975_-	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
WP_009889145.1|1557990_1559520_-	cell wall XkdQ hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.0e-243
WP_009889143.1|1559801_1560224_-	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	70.4	2.2e-52
WP_009889141.1|1560223_1562677_-	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	61.0	6.1e-17
WP_003419648.1|1562676_1562844_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009889139.1|1562870_1563317_-|portal	phage portal protein	portal	A0A0A7RTP2	Clostridium_phage	36.4	1.1e-12
WP_003419646.1|1563430_1563859_-|tail	phage tail tube protein	tail	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
WP_009889137.1|1563872_1564937_-|portal	phage portal protein	portal	A0A1V0DZX4	Clostridioides_phage	52.8	2.6e-97
WP_009889135.1|1564941_1565385_-	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	7.6e-19
WP_009889133.1|1565633_1566074_-	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	4.6e-32
WP_003419641.1|1566178_1566376_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003428185.1|1566544_1566865_+	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
WP_003428186.1|1566946_1567453_+	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
WP_009889132.1|1567616_1568033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009889131.1|1568153_1568909_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_009889129.1|1569051_1569480_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003419624.1|1569900_1570101_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
WP_009892989.1|1570283_1571438_-	amidase domain-containing protein	NA	NA	NA	NA	NA
WP_003428191.1|1571688_1572510_+	pyridoxamine kinase	NA	NA	NA	NA	NA
WP_009889126.1|1572585_1573974_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_009889124.1|1574117_1574876_-	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
WP_009889122.1|1574877_1575594_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
WP_009889121.1|1575595_1576303_-	lantibiotic protection ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.0	3.6e-55
WP_003428196.1|1576419_1576956_-	lipoprotein	NA	NA	NA	NA	NA
WP_009889118.1|1577057_1578128_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_012816112.1|1578120_1579179_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_009889116.1|1579165_1579498_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003428201.1|1579696_1580818_+	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
WP_003428202.1|1580945_1582844_-	glutamine synthetase	NA	NA	NA	NA	NA
WP_009889114.1|1583158_1583935_+	exonuclease domain-containing protein	NA	NA	NA	NA	NA
WP_003438367.1|1584026_1584779_-	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	1.9e-57
WP_009889113.1|1584939_1585890_-	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_003438357.1|1586274_1587471_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_011861180.1|1587582_1588923_-	6-phospho-alpha-glucosidase	NA	NA	NA	NA	NA
WP_009892977.1|1589061_1589814_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009889112.1|1589972_1591550_-	PTS maltose transporter subunit IICB	NA	NA	NA	NA	NA
WP_003419561.1|1591962_1592415_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009889111.1|1592725_1594171_-	adenylosuccinate lyase	NA	NA	NA	NA	NA
WP_009889110.1|1594314_1595223_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
1603436:1603452	attR	TTTAATATATCTTCTTT	NA	NA	NA	NA
>prophage 4
NZ_CP046327	Clostridioides difficile strain FDAARGOS_723 chromosome, complete genome	4178106	2315730	2376347	4178106	transposase,protease,coat	Streptococcus_phage(36.36%)	52	NA	NA
WP_009888423.1|2315730_2316639_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_003427864.1|2317189_2317360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003440126.1|2317531_2317975_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_009892708.1|2318437_2319328_-	radical SAM protein	NA	NA	NA	NA	NA
WP_074014369.1|2319712_2320525_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_009888421.1|2320632_2321001_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_009892706.1|2321324_2322404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155802050.1|2322621_2322867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888420.1|2322998_2323520_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009888419.1|2323647_2325012_+	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_009888418.1|2325200_2325878_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_009888417.1|2326357_2328043_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.1	5.0e-26
WP_009888416.1|2328965_2329547_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003418105.1|2329539_2329770_-	ferredoxin	NA	NA	NA	NA	NA
WP_009888415.1|2331094_2331370_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_003437698.1|2331445_2332747_-	AAA family ATPase	NA	A0A218KST2	Xenohaliotis_phage	29.3	1.1e-20
WP_009888414.1|2333452_2334691_-	hypothetical protein	NA	A0A1V0E018	Clostridioides_phage	33.6	7.4e-11
WP_003437357.1|2335139_2335397_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_003437355.1|2335411_2335552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003437342.1|2335976_2336198_+	DUF1659 domain-containing protein	NA	NA	NA	NA	NA
WP_003437662.1|2336889_2337120_+	DUF2922 domain-containing protein	NA	NA	NA	NA	NA
WP_003429511.1|2337132_2337282_+	YvrJ family protein	NA	NA	NA	NA	NA
WP_003437661.1|2337538_2337976_+	LytTR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009888411.1|2338232_2339126_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_009888410.1|2339303_2340128_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009888409.1|2340253_2340835_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003429517.1|2340938_2341115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888408.1|2342410_2343163_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.3	6.9e-28
WP_009888407.1|2343152_2345264_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_009888406.1|2345877_2346588_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_009899706.1|2347027_2348365_+	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	22.9	3.0e-10
WP_009888403.1|2348701_2349271_-	GrpB family protein	NA	NA	NA	NA	NA
WP_009888401.1|2349626_2350640_-	M56 family metallopeptidase	NA	NA	NA	NA	NA
WP_009900889.1|2351248_2352151_-	chloride channel protein	NA	NA	NA	NA	NA
WP_009888399.1|2352277_2353387_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	54.3	6.6e-112
WP_009888396.1|2354893_2355403_-	GrpB family protein	NA	NA	NA	NA	NA
WP_009888395.1|2355477_2355891_-	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
WP_012816016.1|2356738_2356987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888392.1|2357593_2357773_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_009888391.1|2357997_2358531_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	50.0	7.0e-35
WP_003418062.1|2359348_2359921_-	manganese catalase family protein	NA	NA	NA	NA	NA
WP_009888390.1|2359982_2360246_-|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
WP_009888389.1|2360245_2360467_-|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
WP_009888388.1|2360985_2361522_-	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	70.3	4.2e-64
WP_009888387.1|2361539_2362853_-	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	41.0	1.6e-93
WP_009888386.1|2363188_2363629_+	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
WP_003438914.1|2363813_2364002_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009892678.1|2365062_2365458_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888383.1|2365500_2367600_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	28.8	2.2e-68
WP_009888382.1|2367824_2373035_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888381.1|2373049_2375173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009892676.1|2375237_2376347_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	53.8	3.1e-109
>prophage 5
NZ_CP046327	Clostridioides difficile strain FDAARGOS_723 chromosome, complete genome	4178106	2538553	2545182	4178106	transposase,integrase	Paenibacillus_phage(33.33%)	7	2532758:2532773	2553830:2553845
2532758:2532773	attL	TAGCTAAATTCCAAAA	NA	NA	NA	NA
WP_009892623.1|2538553_2539225_+	helix-turn-helix domain-containing protein	NA	A0A0C5AJ29	Paenibacillus_phage	43.0	1.4e-43
WP_104694834.1|2539185_2540118_+|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	60.7	2.8e-79
WP_009888269.1|2540648_2541809_-	cell wall-binding protein Cwp27	NA	A0A2R2ZGK6	Clostridioides_phage	47.9	5.0e-70
WP_003426228.1|2541979_2542183_-	DUF4236 domain-containing protein	NA	A0A0A8WIL0	Clostridium_phage	74.1	1.5e-14
WP_009888268.1|2542269_2543304_-	YHYH domain-containing protein	NA	NA	NA	NA	NA
WP_021362188.1|2543598_2543745_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WIE1	Clostridium_phage	67.4	1.8e-09
WP_009888265.1|2543826_2545182_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	34.4	8.8e-58
2553830:2553845	attR	TTTTGGAATTTAGCTA	NA	NA	NA	NA
>prophage 6
NZ_CP046327	Clostridioides difficile strain FDAARGOS_723 chromosome, complete genome	4178106	2709940	2726126	4178106		Synechococcus_phage(23.08%)	14	NA	NA
WP_009888051.1|2709940_2710609_-	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	47.7	4.1e-24
WP_009888050.1|2710647_2711631_-	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.9	9.2e-81
WP_009888049.1|2711668_2712226_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.0	1.3e-47
WP_009888048.1|2712262_2713144_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	61.9	8.2e-97
WP_009888047.1|2713252_2714125_-	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	3.8e-14
WP_009888046.1|2714330_2718137_-	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.1	3.0e-31
WP_009888045.1|2718161_2719412_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_009892582.1|2719422_2720955_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
WP_003436064.1|2720947_2721541_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
WP_003425286.1|2721534_2722611_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
WP_003425288.1|2722604_2723972_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
WP_003420966.1|2723983_2724682_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
WP_003425290.1|2724687_2725164_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
WP_009888043.1|2725613_2726126_+	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.1	2.3e-83
>prophage 7
NZ_CP046327	Clostridioides difficile strain FDAARGOS_723 chromosome, complete genome	4178106	3085316	3097704	4178106		Streptococcus_phage(90.91%)	14	NA	NA
WP_009892232.1|3085316_3086210_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	53.0	1.6e-79
WP_009892230.1|3086225_3087233_-	C40 family peptidase	NA	A0A1S5SEZ8	Streptococcus_phage	67.3	6.4e-130
WP_009892229.1|3087229_3089365_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	58.6	1.3e-177
WP_009892228.1|3089364_3091797_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.0	0.0e+00
WP_009892227.1|3091783_3092173_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.8	8.1e-49
WP_153300386.1|3092182_3092323_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009892226.1|3092285_3092789_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	47.6	4.4e-39
WP_009892224.1|3092804_3093302_-	conjugal transfer protein	NA	A0A1S5SF25	Streptococcus_phage	41.2	1.3e-27
WP_009892222.1|3093322_3093511_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009892220.1|3093587_3094226_-	chloramphenicol acetyltransferase CAT	NA	G3CFL0	Escherichia_phage	35.3	7.6e-36
WP_006354966.1|3094545_3094767_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	86.3	1.2e-28
WP_009892216.1|3094767_3094902_-	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_009892210.1|3094908_3096030_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	62.7	1.3e-134
WP_012816450.1|3096309_3097704_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	66.8	1.3e-178
>prophage 8
NZ_CP046327	Clostridioides difficile strain FDAARGOS_723 chromosome, complete genome	4178106	3272464	3286296	4178106	transposase,portal	Clostridioides_phage(83.33%)	17	NA	NA
WP_003437815.1|3272464_3273622_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.5	8.4e-17
WP_012816433.1|3273808_3275023_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	7.9e-50
WP_009888257.1|3275499_3276111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888256.1|3276138_3276321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888255.1|3276560_3277103_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1V0DZZ1	Clostridioides_phage	96.7	3.8e-89
WP_012816432.1|3277134_3277797_+	DUF4367 domain-containing protein	NA	A0A1V0DZZ4	Clostridioides_phage	76.2	4.4e-87
WP_009888253.1|3277986_3278304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888252.1|3278325_3278769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888251.1|3278986_3279430_+	hypothetical protein	NA	A0A1V0DZZ2	Clostridioides_phage	82.6	4.3e-62
WP_009888248.1|3279958_3281164_-|portal	phage portal protein	portal	A0A1V0DZW8	Clostridioides_phage	95.0	2.0e-210
WP_012816431.1|3281258_3281801_-	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	95.0	8.3e-92
WP_021396478.1|3281840_3282059_-	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	94.4	6.8e-37
WP_012816430.1|3282254_3282998_-	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	92.3	4.3e-131
WP_009888247.1|3283297_3283855_-	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	97.8	4.1e-94
WP_009888246.1|3284049_3284238_-	hypothetical protein	NA	A0A1V0E014	Clostridioides_phage	96.8	5.3e-22
WP_009888245.1|3284248_3284824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888243.1|3285156_3286296_-	Fic family protein	NA	A0A1V0E025	Clostridioides_phage	91.8	4.9e-195
>prophage 9
NZ_CP046327	Clostridioides difficile strain FDAARGOS_723 chromosome, complete genome	4178106	4123879	4132832	4178106		Catovirus(50.0%)	8	NA	NA
WP_009891033.1|4123879_4124719_+	glycosyltransferase family 2 protein	NA	A0A2P1ELT8	Moumouvirus	26.3	5.3e-05
WP_004454110.1|4124718_4125909_+	glycerophosphotransferase	NA	NA	NA	NA	NA
WP_003426502.1|4125937_4126687_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
WP_004454111.1|4126708_4127617_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003426498.1|4127664_4128417_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
WP_021419400.1|4128442_4129738_+	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	43.6	3.7e-90
WP_003431768.1|4129743_4130835_+	glycosyltransferase	NA	A0A1V0SL50	Klosneuvirus	26.2	1.8e-16
WP_009891028.1|4130918_4132832_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
