The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	0	1790	3928086		Micromonas_sp._RCC1109_virus(100.0%)	1	NA	NA
WP_011516085.1|743_1790_+	4-hydroxy-2-oxovalerate aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	34.4	3.0e-45
>prophage 2
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	8326	51335	3928086	integrase,transposase	Escherichia_phage(22.22%)	42	18369:18384	42676:42691
WP_085960479.1|8326_9144_-|transposase	IS5-like element ISRme6 family transposase	transposase	NA	NA	NA	NA
WP_011516074.1|9313_10375_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_049799775.1|10519_11848_+	aromatic hydrocarbon degradation protein	NA	NA	NA	NA	NA
WP_011516071.1|12583_13414_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_011516070.1|13586_15431_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_080710382.1|15524_15956_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_011516068.1|16819_17785_-|transposase	IS481-like element ISRme14 family transposase	transposase	NA	NA	NA	NA
18369:18384	attL	CCTGGCCGGCGACATC	NA	NA	NA	NA
WP_029310277.1|18612_18972_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011516065.1|19146_20241_+	hydrogenase small subunit	NA	NA	NA	NA	NA
WP_011516064.1|20261_22121_+	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA	NA
WP_049799686.1|22252_22855_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_011516062.1|22892_23624_+	Ni/Fe-hydrogenase, b-type cytochrome subunit	NA	NA	NA	NA	NA
WP_080710402.1|23743_24091_+	HigA family addiction module antidote protein	NA	M9MUN2	Rhodococcus_phage	42.0	6.9e-07
WP_011516060.1|24112_24778_+	HyaD/HybD family hydrogenase maturation endopeptidase	NA	NA	NA	NA	NA
WP_011516059.1|24779_25082_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
WP_011516058.1|25097_25547_+	hydrogenase	NA	NA	NA	NA	NA
WP_011516057.1|25578_26442_+	hydrogenase expression/formation protein	NA	NA	NA	NA	NA
WP_011516056.1|26447_26678_+	rubredoxin	NA	NA	NA	NA	NA
WP_029310280.1|26670_27156_+	[NiFe]-hydrogenase assembly chaperone HybE	NA	NA	NA	NA	NA
WP_011516054.1|27184_28339_+	hydrogenase expression/formation protein HoxV	NA	NA	NA	NA	NA
WP_011516053.1|28331_28679_+	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA	NA
WP_011516052.1|28702_29740_+	hydrogenase nickel incorporation protein HypB	NA	NA	NA	NA	NA
WP_011516051.1|29753_30893_+	carbamoyltransferase HypF	NA	NA	NA	NA	NA
WP_011516050.1|30883_31111_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
WP_011516049.1|31119_32283_+	hydrogenase formation protein HypD	NA	NA	NA	NA	NA
WP_011516048.1|32279_33392_+	hydrogenase expression/formation protein HypE	NA	NA	NA	NA	NA
WP_152560238.1|34941_35331_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029309997.1|35648_35966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080710364.1|35962_36325_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_049799681.1|36347_38168_+|transposase	IS66 family transposase	transposase	S5VLC8	Leptospira_phage	35.1	8.0e-46
WP_011516043.1|37931_38927_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D2W391	Mycobacterium_phage	25.5	4.0e-07
WP_011516042.1|38923_39871_-|integrase	tyrosine-type recombinase/integrase	integrase	U3PCM7	Lactobacillus_phage	27.5	3.5e-05
WP_011516041.1|39867_41100_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A142F1N9	Bacillus_phage	27.5	4.3e-11
WP_011516040.1|41617_42787_+	ABC transporter permease	NA	NA	NA	NA	NA
42676:42691	attR	CCTGGCCGGCGACATC	NA	NA	NA	NA
WP_011516039.1|42791_43910_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011516038.1|43906_45445_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010792188.1|45464_45668_+	DUF2892 domain-containing protein	NA	NA	NA	NA	NA
WP_011516037.1|45675_47085_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_011516036.1|47084_47951_+	TIGR00730 family Rossman fold protein	NA	A0A1D8KU27	Synechococcus_phage	32.4	2.3e-11
WP_011516035.1|48118_49129_+|transposase	IS21-like element ISRme20 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	49.4	8.2e-85
WP_011516034.1|49128_49935_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	57.5	4.6e-78
WP_011515352.1|50084_51335_+|transposase	IS256-like element IS1090 family transposase	transposase	A0A218MNI5	uncultured_virus	42.8	4.0e-41
>prophage 3
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	56959	57598	3928086		Halomonas_phage(100.0%)	1	NA	NA
WP_011516027.1|56959_57598_-	AAA family ATPase	NA	B0ZSI1	Halomonas_phage	40.1	3.3e-31
>prophage 4
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	66178	69741	3928086	integrase	Cronobacter_phage(50.0%)	3	65386:65401	76933:76948
65386:65401	attL	CGACGAAGCGCACCAG	NA	NA	NA	NA
WP_041240053.1|66178_67003_-	DUF945 domain-containing protein	NA	K4F5L3	Cronobacter_phage	40.9	1.8e-42
WP_011516015.1|67711_68104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011516014.1|68730_69741_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0K2CP59	Brevibacillus_phage	28.3	2.9e-21
76933:76948	attR	CTGGTGCGCTTCGTCG	NA	NA	NA	NA
>prophage 5
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	72851	77751	3928086	integrase	Salmonella_phage(50.0%)	3	NA	NA
WP_011516011.1|72851_73928_-	DUF1016 domain-containing protein	NA	A0A0U2BZN7	Salmonella_phage	39.7	1.8e-21
WP_011516010.1|73924_75124_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_035822143.1|75558_77751_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	31.4	3.0e-84
>prophage 6
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	81501	85252	3928086		Acanthocystis_turfacea_Chlorella_virus(33.33%)	3	NA	NA
WP_008646843.1|81501_83400_-	potassium transporter Kup	NA	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	29.8	6.5e-59
WP_008646845.1|83771_84488_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.0	5.6e-11
WP_011516003.1|84484_85252_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	29.3	2.8e-16
>prophage 7
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	89316	90966	3928086		Tupanvirus(100.0%)	1	NA	NA
WP_011515999.1|89316_90966_-	benzoate-CoA ligase family protein	NA	A0A2K9KZV5	Tupanvirus	21.6	1.1e-12
>prophage 8
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	105686	106481	3928086		Indivirus(100.0%)	1	NA	NA
WP_011515985.1|105686_106481_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	24.8	6.4e-08
>prophage 9
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	111574	116837	3928086		Acanthocystis_turfacea_Chlorella_virus(33.33%)	5	NA	NA
WP_008648595.1|111574_112270_-	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.8	1.2e-21
WP_029310151.1|112302_112749_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_029310152.1|112855_113779_-	histone deacetylase	NA	A0A0N9QAS6	Chrysochromulina_ericina_virus	22.2	4.5e-05
WP_011515979.1|114213_114792_+	TIGR01841 family phasin PhaP1	NA	NA	NA	NA	NA
WP_011515978.1|115058_116837_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.3	1.1e-34
>prophage 10
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	126872	133069	3928086		Enterococcus_phage(33.33%)	5	NA	NA
WP_011515972.1|126872_127730_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	34.8	2.5e-34
WP_011515971.1|127863_129966_+	M3 family metallopeptidase	NA	A0A1V0SD92	Indivirus	20.9	1.4e-33
WP_011515970.1|130004_130460_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011515969.1|130456_131254_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_011515968.1|131257_133069_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	26.8	3.8e-24
>prophage 11
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	145923	150395	3928086		Streptococcus_phage(25.0%)	4	NA	NA
WP_011515956.1|145923_147201_-	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	55.6	7.9e-125
WP_011515955.1|147320_148220_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.1	4.1e-11
WP_011515954.1|148140_149655_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	28.1	2.9e-09
WP_029308127.1|149651_150395_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	31.1	3.0e-28
>prophage 12
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	157004	164492	3928086	tRNA	Bacillus_phage(25.0%)	7	NA	NA
WP_008650476.1|157004_157415_-	integration host factor subunit alpha	NA	A0A1P8CWT5	Bacillus_phage	41.1	1.3e-12
WP_011515947.1|157499_159947_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_011515946.1|160024_161056_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	40.0	2.7e-27
WP_008650487.1|161264_161621_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_006575466.1|161649_161847_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_080672715.1|162015_162537_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	31.7	4.8e-12
WP_029308133.1|162584_164492_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.2	7.6e-124
>prophage 13
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	188330	189440	3928086		Pandoravirus(100.0%)	1	NA	NA
WP_011515925.1|188330_189440_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	45.0	1.9e-79
>prophage 14
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	207279	210414	3928086		Leptospira_phage(100.0%)	1	NA	NA
WP_011515908.1|207279_210414_+	multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	22.9	4.4e-52
>prophage 15
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	214902	215928	3928086		Lactococcus_phage(100.0%)	1	NA	NA
WP_011515904.1|214902_215928_+	2,3-diaminopropionate biosynthesis protein SbnA	NA	A0A1W6JHY1	Lactococcus_phage	33.4	3.8e-37
>prophage 16
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	236030	237449	3928086	tRNA	Niemeyer_virus(100.0%)	1	NA	NA
WP_011515887.1|236030_237449_-|tRNA	cysteine--tRNA ligase	tRNA	A0A0U2SJ70	Niemeyer_virus	30.5	1.7e-40
>prophage 17
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	244153	249208	3928086		Tupanvirus(50.0%)	3	NA	NA
WP_011515880.1|244153_245182_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	28.9	5.5e-36
WP_011515879.1|245329_246835_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA	NA
WP_035821823.1|247393_249208_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	39.1	6.3e-19
>prophage 18
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	256492	260063	3928086	tRNA	Moumouvirus(50.0%)	4	NA	NA
WP_024569174.1|256492_257881_-|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	32.5	5.3e-42
WP_049799662.1|258092_258818_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_011515871.1|258899_259508_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_011515870.1|259562_260063_+	peptidyl-prolyl cis-trans isomerase	NA	A0A076FI46	Aureococcus_anophage	33.5	3.0e-11
>prophage 19
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	264165	267712	3928086		Acinetobacter_phage(33.33%)	3	NA	NA
WP_011515865.1|264165_264345_+	type II toxin-antitoxin system HicA family toxin	NA	A0A0D4DC32	Acinetobacter_phage	57.6	2.8e-12
WP_029310017.1|264374_264779_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0U4ISP5	Pseudomonas_phage	40.3	8.8e-22
WP_035821829.1|265105_267712_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	23.5	2.0e-26
>prophage 20
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	271140	271929	3928086		Paenibacillus_phage(100.0%)	1	NA	NA
WP_011515857.1|271140_271929_-	MBL fold metallo-hydrolase	NA	A0A2I7SDH3	Paenibacillus_phage	31.7	4.7e-27
>prophage 21
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	277286	281171	3928086		Tupanvirus(100.0%)	3	NA	NA
WP_011515851.1|277286_278348_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2K9L4X0	Tupanvirus	26.1	4.1e-10
WP_011515850.1|278404_279298_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029309929.1|279443_281171_+	AMP-binding protein	NA	A0A2K9L3I8	Tupanvirus	22.9	3.8e-21
>prophage 22
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	284908	289226	3928086		Streptococcus_phage(33.33%)	4	NA	NA
WP_008650102.1|284908_286198_-	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	63.8	3.9e-156
WP_008650103.1|286262_286553_-	DUF1330 domain-containing protein	NA	NA	NA	NA	NA
WP_011515845.1|286681_287551_-	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	41.1	4.1e-48
WP_011515844.1|287576_289226_-	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	52.2	8.3e-151
>prophage 23
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	302354	317961	3928086	tRNA	Planktothrix_phage(12.5%)	16	NA	NA
WP_011515832.1|302354_303104_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	39.8	3.6e-37
WP_011515831.1|303096_304347_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_011515830.1|304450_305569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011515829.1|305615_307316_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.9	2.0e-59
WP_011515828.1|307390_308113_-	M23 family metallopeptidase	NA	G3MBP9	Bacillus_virus	37.1	1.4e-06
WP_104669723.1|308317_309421_+	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	37.1	2.9e-06
WP_008649271.1|309557_310328_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_011515826.1|310387_311935_+|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	37.0	1.1e-83
WP_011515825.1|312212_312917_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_029308219.1|313035_314052_+	outer membrane beta-barrel protein	NA	NA	NA	NA	NA
WP_008649279.1|314112_314307_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_011515823.1|314329_314668_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_011515822.1|314709_316575_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	39.7	1.1e-98
WP_011515821.1|316584_317103_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_008649296.1|317167_317488_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.3	1.4e-25
WP_008649297.1|317559_317961_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	82.3	6.6e-54
>prophage 24
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	332821	333790	3928086		Mycobacterium_phage(100.0%)	1	NA	NA
WP_011515810.1|332821_333790_+	alpha/beta hydrolase	NA	G1DB77	Mycobacterium_phage	25.8	7.8e-08
>prophage 25
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	345940	347563	3928086	protease	Tupanvirus(100.0%)	1	NA	NA
WP_011515797.1|345940_347563_+|protease	MprA protease, GlyGly-CTERM protein-sorting domain-containing form	protease	A0A2K9L1P3	Tupanvirus	28.3	4.8e-10
>prophage 26
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	359644	360727	3928086		Pandoravirus(100.0%)	1	NA	NA
WP_085960478.1|359644_360727_+	3-deoxy-7-phosphoheptulonate synthase AroG	NA	S4W5F1	Pandoravirus	45.3	5.2e-77
>prophage 27
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	391206	392750	3928086		Anomala_cuprea_entomopoxvirus(50.0%)	2	NA	NA
WP_008643406.1|391206_391899_-	urea ABC transporter ATP-binding subunit UrtE	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.1	5.9e-18
WP_011515764.1|391901_392750_-	urea ABC transporter ATP-binding protein UrtD	NA	A0A1M7XV31	Cedratvirus	23.6	4.7e-09
>prophage 28
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	430128	432480	3928086		Micromonas_sp._RCC1109_virus(50.0%)	2	NA	NA
WP_008643333.1|430128_431670_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	24.5	1.8e-06
WP_011515741.1|431979_432480_-	peptidoglycan-binding protein LysM	NA	G3MBQ1	Bacillus_virus	48.1	1.7e-06
>prophage 29
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	441695	446412	3928086		uncultured_virus(33.33%)	6	NA	NA
WP_029308259.1|441695_442733_+	UDP-2,3-diacylglucosamine diphosphatase	NA	A0A218MKA7	uncultured_virus	46.0	1.3e-61
WP_011515730.1|442832_443951_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_080672710.1|443877_444375_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_011515728.1|444434_445019_-	TIGR00730 family Rossman fold protein	NA	A0A1V0S9E9	Catovirus	25.9	2.3e-07
WP_011515727.1|445015_445726_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029308261.1|445827_446412_-	DUF924 domain-containing protein	NA	A0A1V0SIY0	Klosneuvirus	28.4	4.2e-17
>prophage 30
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	453568	458443	3928086		Acinetobacter_phage(100.0%)	3	NA	NA
WP_011515719.1|453568_455065_+	xanthine dehydrogenase small subunit	NA	A0A0P0IVM8	Acinetobacter_phage	52.2	1.3e-131
WP_011515718.1|455076_457428_+	xanthine dehydrogenase molybdopterin binding subunit	NA	A0A0P0I429	Acinetobacter_phage	55.5	1.8e-239
WP_011515717.1|457447_458443_+	xanthine dehydrogenase accessory protein XdhC	NA	A0A0P0IKN7	Acinetobacter_phage	38.9	1.5e-51
>prophage 31
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	466338	467745	3928086		Enterobacteria_phage(100.0%)	1	NA	NA
WP_011515709.1|466338_467745_+	purine permease	NA	Q9KX94	Enterobacteria_phage	27.8	5.4e-26
>prophage 32
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	477439	478456	3928086		Klosneuvirus(100.0%)	1	NA	NA
WP_008649749.1|477439_478456_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	34.4	2.6e-46
>prophage 33
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	487126	489567	3928086		Bacillus_virus(50.0%)	2	NA	NA
WP_011515694.1|487126_488605_+	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	31.6	1.2e-10
WP_011515693.1|488664_489567_-	lipid A hydroxylase LpxO	NA	S4VR59	Pandoravirus	38.1	5.2e-38
>prophage 34
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	494269	500139	3928086		Bordetella_phage(33.33%)	5	NA	NA
WP_029308276.1|494269_496690_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A291L9W9	Bordetella_phage	33.7	2.8e-14
WP_006578656.1|496979_497183_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_011515683.1|497267_497918_-	guanylate kinase	NA	A0A223FNL1	NY_014_poxvirus	31.4	7.3e-18
WP_008647044.1|497922_498858_-	YicC family protein	NA	NA	NA	NA	NA
WP_008647046.1|499077_500139_+	serine/threonine protein kinase	NA	Q8JE84	Murine_leukemia_virus	29.0	2.8e-11
>prophage 35
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	506205	507096	3928086		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_011515675.1|506205_507096_+	trypsin-like peptidase domain-containing protein	NA	A0A2H4JE36	uncultured_Caudovirales_phage	33.1	1.8e-30
>prophage 36
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	516384	517071	3928086		Synechococcus_phage(100.0%)	1	NA	NA
WP_011515666.1|516384_517071_-	PKHD-type hydroxylase	NA	Q5GQB0	Synechococcus_phage	29.4	5.9e-18
>prophage 37
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	525950	528575	3928086	tRNA	Klosneuvirus(100.0%)	1	NA	NA
WP_029308285.1|525950_528575_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	38.2	7.9e-79
>prophage 38
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	543233	544982	3928086	tRNA	Escherichia_phage(100.0%)	1	NA	NA
WP_011515648.1|543233_544982_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	57.0	5.6e-190
>prophage 39
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	553841	556616	3928086		Acanthamoeba_polyphaga_lentillevirus(50.0%)	4	NA	NA
WP_011515639.1|553841_554597_+	slipin family protein	NA	J3IZE5	Acanthamoeba_polyphaga_lentillevirus	30.6	1.0e-23
WP_011515638.1|554751_555198_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017511209.1|555232_555370_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011515637.1|555419_556616_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	25.6	9.6e-08
>prophage 40
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	560841	562410	3928086		Staphylococcus_phage(100.0%)	1	NA	NA
WP_029308301.1|560841_562410_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	2.0e-21
>prophage 41
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	570636	572172	3928086		Klebsiella_phage(100.0%)	1	NA	NA
WP_011515626.1|570636_572172_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	43.3	8.7e-78
>prophage 42
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	582671	586133	3928086		Organic_Lake_phycodnavirus(50.0%)	4	NA	NA
WP_011515615.1|582671_583601_+	phosphonate ABC transporter ATP-binding protein	NA	F2Y302	Organic_Lake_phycodnavirus	25.7	2.8e-07
WP_008645163.1|583721_584702_+	phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_029308312.1|584784_585597_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_011515613.1|585593_586133_+	HD domain-containing protein	NA	A0A2K9L4U0	Tupanvirus	39.3	5.6e-24
>prophage 43
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	593409	604915	3928086		Bacillus_virus(25.0%)	9	NA	NA
WP_011515603.1|593409_594186_+	phosphonate C-P lyase system protein PhnK	NA	G3M9Y6	Bacillus_virus	24.0	3.8e-13
WP_104670185.1|594191_594914_+	phosphonate C-P lyase system protein PhnL	NA	G9BWD6	Planktothrix_phage	32.2	8.1e-18
WP_029309700.1|594933_596133_+	alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase	NA	NA	NA	NA	NA
WP_080710320.1|596386_596887_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011515599.1|596909_597494_-	peroxidase-related enzyme	NA	NA	NA	NA	NA
WP_035820263.1|597578_599345_-	lipid A export permease/ATP-binding protein MsbA	NA	W8CYL7	Bacillus_phage	28.5	4.8e-56
WP_011515597.1|599441_600224_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_011515596.1|600156_601419_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_029309702.1|601411_604915_-	DNA polymerase III subunit alpha	NA	A0A0K1Y9G6	Streptomyces_phage	36.2	6.2e-172
>prophage 44
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	621434	633735	3928086		Bacillus_phage(25.0%)	12	NA	NA
WP_008643673.1|621434_622469_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.0	8.0e-35
WP_008643671.1|622642_623566_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	33.3	1.6e-39
WP_029308328.1|623730_624837_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_029309853.1|624916_625819_-	cysteine synthase CysM	NA	C3U2M1	Lactococcus_phage	41.2	8.2e-52
WP_011515577.1|625929_627378_-	nitrate reductase	NA	Q9KX94	Enterobacteria_phage	64.4	1.3e-144
WP_011515576.1|627475_627856_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011515575.1|628065_629061_-	ADP-glyceromanno-heptose 6-epimerase	NA	R9S880	Prochlorococcus_phage	33.4	3.1e-28
WP_011515574.1|629087_630032_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	27.5	3.8e-15
WP_011515573.1|630111_631485_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	35.4	3.5e-70
WP_011515572.1|631542_632772_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_008643660.1|632775_633099_-	LapA family protein	NA	NA	NA	NA	NA
WP_011515571.1|633327_633735_-	integration host factor subunit beta	NA	A7KV42	Bacillus_phage	37.8	6.0e-10
>prophage 45
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	638960	646035	3928086		Faustovirus(33.33%)	5	NA	NA
WP_011515566.1|638960_640085_-	histidinol-phosphate transaminase	NA	A0A1X7BZP2	Faustovirus	26.5	3.8e-14
WP_011515565.1|640104_641268_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_008643651.1|641368_642532_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	45.3	3.4e-82
WP_011515564.1|642689_643259_-	DUF2059 domain-containing protein	NA	NA	NA	NA	NA
WP_011515563.1|643341_646035_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	32.8	8.0e-103
>prophage 46
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	651069	653373	3928086		Bacillus_phage(100.0%)	1	NA	NA
WP_029309855.1|651069_653373_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.8	2.5e-60
>prophage 47
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	666159	669836	3928086	tRNA	uncultured_Mediterranean_phage(33.33%)	3	NA	NA
WP_011515546.1|666159_667467_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.9	6.0e-96
WP_035821263.1|667634_668930_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	36.9	4.7e-77
WP_011515544.1|669086_669836_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	5.8e-35
>prophage 48
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	674822	678285	3928086		Mycobacterium_phage(50.0%)	2	NA	NA
WP_011515538.1|674822_677150_-	DNA translocase FtsK	NA	G1FGP1	Mycobacterium_phage	49.7	4.2e-84
WP_011515537.1|677331_678285_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	43.3	7.1e-62
>prophage 49
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	683755	696647	3928086		uncultured_Caudovirales_phage(50.0%)	7	NA	NA
WP_011515533.1|683755_684283_-	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	52.6	5.5e-48
WP_011515532.1|684447_685884_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_008643588.1|685876_686116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011515531.1|686186_686948_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.0	7.7e-19
WP_011515530.1|687057_688371_+	MFS transporter	NA	NA	NA	NA	NA
WP_011515529.1|688443_694413_-	hybrid sensor histidine kinase/response regulator	NA	W8CYM9	Bacillus_phage	35.6	1.7e-12
WP_011515528.1|694445_696647_-	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	35.5	1.4e-12
>prophage 50
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	711348	712365	3928086		Salmonella_phage(100.0%)	1	NA	NA
WP_011515513.1|711348_712365_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	57.1	6.3e-93
>prophage 51
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	729152	729941	3928086		Caulobacter_phage(100.0%)	1	NA	NA
WP_011515495.1|729152_729941_+	metallophosphoesterase	NA	K4K650	Caulobacter_phage	37.7	1.0e-42
>prophage 52
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	740004	740259	3928086		Rhizobium_phage(100.0%)	1	NA	NA
WP_011515488.1|740004_740259_-	PAAR domain-containing protein	NA	R9U4D0	Rhizobium_phage	53.7	3.6e-05
>prophage 53
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	745129	747799	3928086		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_011515483.1|745129_747799_-	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	32.9	3.4e-13
>prophage 54
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	754569	760000	3928086	plate	uncultured_virus(66.67%)	4	NA	NA
WP_011515475.1|754569_757251_+	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	31.8	2.2e-92
WP_011515474.1|757247_757682_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_008644493.1|757981_759625_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	60.6	3.4e-173
WP_008644494.1|759709_760000_-	co-chaperone GroES	NA	A0A221S4A8	uncultured_virus	43.6	5.5e-18
>prophage 55
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	769268	775780	3928086		Staphylococcus_phage(33.33%)	4	NA	NA
WP_011515469.1|769268_770981_+	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	27.9	7.5e-30
WP_011515468.1|770985_772593_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	70.8	6.0e-21
WP_011515467.1|772606_774646_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_011515466.1|774847_775780_+	hydroxymethylglutaryl-CoA lyase	NA	A0A1V0SKU2	Klosneuvirus	35.9	2.8e-39
>prophage 56
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	795391	798757	3928086		Bacillus_virus(100.0%)	1	NA	NA
WP_011515451.1|795391_798757_+	diguanylate cyclase	NA	G3MA91	Bacillus_virus	35.7	5.3e-19
>prophage 57
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	804924	806025	3928086		Klosneuvirus(100.0%)	1	NA	NA
WP_011515446.1|804924_806025_-	ornithine cyclodeaminase	NA	A0A1V0SL93	Klosneuvirus	46.9	4.0e-85
>prophage 58
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	824877	825600	3928086		Planktothrix_phage(100.0%)	1	NA	NA
WP_029308392.1|824877_825600_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	35.1	3.4e-24
>prophage 59
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	853081	855896	3928086		Prochlorococcus_phage(50.0%)	3	NA	NA
WP_011515407.1|853081_854179_-	Zn-dependent alcohol dehydrogenase	NA	A0A0K0KVL7	Prochlorococcus_phage	29.0	9.1e-29
WP_011515406.1|854211_854880_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011515405.1|854876_855896_-	ferredoxin--NADP reductase	NA	A0A1D8KP97	Synechococcus_phage	38.5	1.4e-07
>prophage 60
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	859645	861739	3928086		Bacillus_thuringiensis_phage(50.0%)	2	NA	NA
WP_008640957.1|859645_860224_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	44.2	1.4e-44
WP_049799652.1|860353_861739_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	31.0	6.9e-34
>prophage 61
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	871915	873409	3928086		Bacillus_phage(100.0%)	1	NA	NA
WP_011515388.1|871915_873409_-	N-acetylmuramoyl-L-alanine amidase	NA	Q5YA51	Bacillus_phage	28.3	5.6e-13
>prophage 62
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	878090	882785	3928086	tRNA	Powai_lake_megavirus(33.33%)	6	NA	NA
WP_008645026.1|878090_878570_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	A0A167R6J9	Powai_lake_megavirus	45.2	8.0e-14
WP_011515383.1|878566_879475_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	28.5	5.0e-25
WP_011515382.1|879497_879989_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_008645034.1|880087_880696_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_011515381.1|880770_882054_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_008645039.1|882050_882785_-	response regulator	NA	W8CYM9	Bacillus_phage	34.8	2.3e-28
>prophage 63
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	887675	890978	3928086		Leptospira_phage(100.0%)	1	NA	NA
WP_011515378.1|887675_890978_+	MMPL family transporter	NA	S5VTK5	Leptospira_phage	22.1	8.1e-65
>prophage 64
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	895795	899505	3928086		Pandoravirus(33.33%)	4	NA	NA
WP_011515372.1|895795_896788_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	36.7	2.1e-40
WP_011515371.1|896803_898048_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_008652146.1|898077_898575_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	41.9	3.4e-15
WP_008652147.1|898596_899505_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	37.8	8.8e-54
>prophage 65
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	910600	913540	3928086		Ostreococcus_lucimarinus_virus(100.0%)	1	NA	NA
WP_035822026.1|910600_913540_-	DEAD/DEAH box helicase	NA	A0A0P0CJA9	Ostreococcus_lucimarinus_virus	30.0	6.2e-40
>prophage 66
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	921082	926283	3928086	transposase	Escherichia_phage(66.67%)	5	NA	NA
WP_011515356.1|921082_921868_-	ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	36.2	3.0e-34
WP_011515355.1|921857_923384_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	25.6	5.2e-14
WP_011515353.1|923711_924194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080710404.1|924279_924945_-	DUF4435 domain-containing protein	NA	NA	NA	NA	NA
WP_011515352.1|925032_926283_+|transposase	IS256-like element IS1090 family transposase	transposase	A0A218MNI5	uncultured_virus	42.8	4.0e-41
>prophage 67
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	933072	933768	3928086		Pseudomonas_phage(100.0%)	1	NA	NA
WP_011515344.1|933072_933768_-	TerC family protein	NA	W8EBD0	Pseudomonas_phage	40.1	3.7e-28
>prophage 68
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	937875	950351	3928086		Bacillus_phage(50.0%)	10	NA	NA
WP_008646499.1|937875_938937_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	65.3	3.3e-116
WP_011515340.1|939176_939866_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_011515339.1|939887_941462_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	28.1	4.6e-18
WP_104669615.1|941482_941779_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_011515337.1|942137_943835_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_011515334.1|944442_946101_-	putative pyridoxal-dependent aspartate 1-decarboxylase	NA	S4W1T5	Pandoravirus	26.8	1.6e-21
WP_011515333.1|946228_946852_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_011515332.1|947181_947616_+	universal stress protein	NA	NA	NA	NA	NA
WP_011515331.1|947670_948717_-	serine/threonine protein kinase	NA	NA	NA	NA	NA
WP_011515330.1|948728_950351_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.8	2.7e-53
>prophage 69
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	954252	955248	3928086		Pseudomonas_phage(100.0%)	1	NA	NA
WP_011515326.1|954252_955248_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	46.0	1.5e-46
>prophage 70
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	981598	986911	3928086		Prochlorococcus_phage(50.0%)	5	NA	NA
WP_011515301.1|981598_983173_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	45.1	8.1e-63
WP_008646027.1|983299_983845_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_011515300.1|983959_985138_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
WP_011515299.1|985192_985774_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_011515298.1|985843_986911_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	27.3	1.7e-08
>prophage 71
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	991846	994846	3928086		Gordonia_phage(50.0%)	3	NA	NA
WP_011515291.1|991846_993241_+	M23 family metallopeptidase	NA	A0A2P1JY73	Gordonia_phage	46.2	4.5e-17
WP_011515290.1|993243_994386_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_008646009.1|994477_994846_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	57.4	2.3e-29
>prophage 72
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1004232	1004967	3928086		Planktothrix_phage(100.0%)	1	NA	NA
WP_008645995.1|1004232_1004967_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.4	3.6e-29
>prophage 73
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1012139	1016115	3928086		Bacillus_virus(50.0%)	3	NA	NA
WP_011515270.1|1012139_1012985_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.5	7.5e-31
WP_011515269.1|1012981_1014040_-	taurine ABC transporter permease	NA	NA	NA	NA	NA
WP_011515268.1|1014222_1016115_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	28.7	9.8e-47
>prophage 74
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1031441	1036065	3928086		Vibrio_phage(50.0%)	4	NA	NA
WP_011515255.1|1031441_1032149_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	27.9	2.0e-13
WP_011515254.1|1032163_1032493_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_011515253.1|1032716_1034153_-	sodium:solute symporter	NA	NA	NA	NA	NA
WP_011515251.1|1034487_1036065_-	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	M4QMK7	Micromonas_pusilla_virus	32.4	2.4e-38
>prophage 75
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1039204	1041115	3928086		Bacillus_phage(100.0%)	1	NA	NA
WP_008644384.1|1039204_1041115_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	30.4	2.9e-06
>prophage 76
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1053246	1054293	3928086		Acinetobacter_phage(100.0%)	1	NA	NA
WP_029308424.1|1053246_1054293_+	XdhC family protein	NA	A0A0P0IKN7	Acinetobacter_phage	27.6	1.9e-15
>prophage 77
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1060758	1061592	3928086		Vibrio_phage(100.0%)	1	NA	NA
WP_011515232.1|1060758_1061592_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	39.8	6.0e-41
>prophage 78
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1064881	1065868	3928086		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011515228.1|1064881_1065868_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.7	2.0e-19
>prophage 79
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1070730	1072056	3928086		Klosneuvirus(100.0%)	1	NA	NA
WP_011515223.1|1070730_1072056_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	24.9	2.4e-20
>prophage 80
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1080708	1087103	3928086		uncultured_Caudovirales_phage(75.0%)	8	NA	NA
WP_011515216.1|1080708_1082208_+	lytic transglycosylase F	NA	A0A0S2SXL7	Bacillus_phage	31.5	9.2e-16
WP_011515215.1|1082437_1083256_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_011515214.1|1083449_1083779_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011515213.1|1083782_1084271_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_011515212.1|1084336_1084849_+	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	44.5	1.6e-28
WP_011515211.1|1084845_1085910_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA	NA
WP_011515210.1|1085919_1086342_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	66.4	4.0e-49
WP_011515209.1|1086338_1087103_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	71.9	5.8e-91
>prophage 81
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1090449	1120579	3928086	protease,integrase,transposase	Burkholderia_virus(16.67%)	28	1088663:1088680	1122476:1122493
1088663:1088680	attL	CGATGCGCGATGCGCGCG	NA	NA	NA	NA
WP_152560155.1|1090449_1092147_-|integrase	integrase	integrase	NA	NA	NA	NA
WP_049799649.1|1092457_1093573_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_124682078.1|1093732_1094278_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_008651549.1|1094389_1095829_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_008651548.1|1095825_1096659_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_008651547.1|1096655_1096928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029310226.1|1097106_1097619_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011515203.1|1097615_1098812_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_011515202.1|1098999_1099866_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011515201.1|1100098_1100644_-	single-stranded DNA-binding protein	NA	C5IHK5	Burkholderia_virus	85.3	2.3e-49
WP_011515200.1|1100919_1102176_-	MFS transporter	NA	NA	NA	NA	NA
WP_011515199.1|1102450_1105318_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	54.8	6.2e-303
WP_011515198.1|1105371_1107048_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_011515197.1|1107327_1107900_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.5	1.6e-29
WP_011515196.1|1107975_1108605_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_011515195.1|1108663_1109092_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_029306755.1|1109081_1111061_-	potassium transporter	NA	NA	NA	NA	NA
WP_011515193.1|1111211_1112195_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	33.7	2.0e-35
WP_011515192.1|1112198_1112825_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_011515191.1|1112887_1113532_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_011515190.1|1113557_1114349_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.0	2.5e-20
WP_011515189.1|1114472_1115951_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_008650960.1|1116001_1116355_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_017511024.1|1116831_1117287_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
WP_008650955.1|1117355_1118327_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_017511023.1|1118532_1118874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011515185.1|1118988_1119879_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	37.4	1.1e-08
WP_011515184.1|1119925_1120579_+|protease	ATP-dependent protease	protease	NA	NA	NA	NA
1122476:1122493	attR	CGCGCGCATCGCGCATCG	NA	NA	NA	NA
>prophage 82
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1129044	1136327	3928086	tRNA	Tupanvirus(50.0%)	8	NA	NA
WP_008650936.1|1129044_1129998_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L2G2	Tupanvirus	33.8	2.4e-41
WP_011515177.1|1130168_1130780_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_011515176.1|1130954_1131551_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_008650933.1|1131674_1131935_-	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	58.0	5.3e-20
WP_011515175.1|1132001_1132487_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	45.3	3.6e-30
WP_035820726.1|1132698_1133259_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_011515173.1|1133439_1134804_-	insulinase family protein	NA	NA	NA	NA	NA
WP_011515172.1|1134812_1136327_-	insulinase family protein	NA	A0A2K9L1M6	Tupanvirus	22.5	2.2e-25
>prophage 83
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1142549	1146624	3928086		Bacillus_virus(50.0%)	4	NA	NA
WP_011515164.1|1142549_1143353_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.0	4.0e-34
WP_011515163.1|1143451_1144441_+	DNA-binding protein YbiB	NA	NA	NA	NA	NA
WP_011515162.1|1144481_1145357_-	pirin family protein	NA	NA	NA	NA	NA
WP_008642691.1|1145688_1146624_+	RNA polymerase sigma factor RpoH	NA	A0A248SJA5	Salicola_phage	37.7	4.4e-40
>prophage 84
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1153252	1154863	3928086		Flavobacterium_phage(100.0%)	1	NA	NA
WP_011515154.1|1153252_1154863_-	cytochrome c oxidase subunit I	NA	R9VX24	Flavobacterium_phage	35.8	3.2e-06
>prophage 85
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1162131	1165353	3928086		Pseudomonas_phage(50.0%)	2	NA	NA
WP_008642654.1|1162131_1163847_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	67.5	3.1e-225
WP_011515148.1|1165095_1165353_-	glutaredoxin 3	NA	V9QKN6	Rhizobium_phage	43.6	4.4e-11
>prophage 86
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1168664	1172558	3928086		Catovirus(50.0%)	4	NA	NA
WP_011515144.1|1168664_1169417_+	molybdopterin-synthase adenylyltransferase MoeB	NA	A0A1V0SAV8	Catovirus	26.5	6.1e-08
WP_008645854.1|1169633_1170113_-	bacterioferritin	NA	NA	NA	NA	NA
WP_011515143.1|1170258_1170564_-	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_011515142.1|1170800_1172558_-	phosphoenolpyruvate--protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	29.3	3.8e-13
>prophage 87
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1184348	1188096	3928086		Bacillus_phage(50.0%)	2	NA	NA
WP_011515132.1|1184348_1186457_+	ATP-dependent helicase	NA	A7KV33	Bacillus_phage	29.0	7.0e-62
WP_011515131.1|1186494_1188096_-	tyrosine 2,3-aminomutase	NA	A0A1V0S940	Catovirus	36.3	1.1e-67
>prophage 88
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1194610	1195804	3928086		Stx2-converting_phage(100.0%)	1	NA	NA
WP_008641765.1|1194610_1195804_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.3	2.6e-61
>prophage 89
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1200529	1201345	3928086		Staphylococcus_phage(100.0%)	1	NA	NA
WP_008641776.1|1200529_1201345_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.0	4.4e-12
>prophage 90
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1204853	1207776	3928086		Brazilian_cedratvirus(50.0%)	2	NA	NA
WP_011515120.1|1204853_1205795_-	ATP-binding cassette domain-containing protein	NA	A0A2R8FG22	Brazilian_cedratvirus	24.8	1.2e-13
WP_011515119.1|1205811_1207776_-	AMP-binding protein	NA	A0A1V0SBX8	Catovirus	23.3	5.1e-30
>prophage 91
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1231036	1231633	3928086		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011515101.1|1231036_1231633_-	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	45.1	3.1e-39
>prophage 92
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1238878	1252188	3928086	tRNA	Paramecium_bursaria_Chlorella_virus(20.0%)	12	NA	NA
WP_011515093.1|1238878_1240717_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	46.4	1.3e-149
WP_008641833.1|1240731_1242096_-	UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase	NA	A0A2K9L277	Tupanvirus	35.0	4.4e-33
WP_035821838.1|1242383_1243190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011515091.1|1243219_1244164_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	70.5	2.4e-102
WP_008641837.1|1244279_1244678_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_011515090.1|1244699_1245500_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_011515089.1|1245534_1246731_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_008641842.1|1246756_1246951_+	DUF2905 domain-containing protein	NA	NA	NA	NA	NA
WP_011515088.1|1246991_1248236_-	multifunctional CCA addition/repair protein	NA	A0A0F6YPT7	Sinorhizobium_phage	42.5	1.8e-81
WP_011515087.1|1248239_1248929_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_011515086.1|1249097_1250120_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_011515085.1|1250220_1252188_-	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	37.3	6.2e-12
>prophage 93
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1255520	1256939	3928086		Pandoravirus(100.0%)	1	NA	NA
WP_008641860.1|1255520_1256939_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	30.4	6.0e-41
>prophage 94
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1266887	1274059	3928086		uncultured_Caudovirales_phage(33.33%)	5	NA	NA
WP_011515072.1|1266887_1268429_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	68.0	1.5e-08
WP_011515071.1|1268480_1270163_-	FAD-binding protein	NA	A0A1V0SI18	Klosneuvirus	28.8	6.6e-47
WP_011515070.1|1270410_1271814_+	coniferyl aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_011515069.1|1271859_1272753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008648556.1|1272895_1274059_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.2	9.7e-122
>prophage 95
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1279983	1280760	3928086		Phaeocystis_globosa_virus(100.0%)	1	NA	NA
WP_011515063.1|1279983_1280760_+	exodeoxyribonuclease III	NA	R4TWA8	Phaeocystis_globosa_virus	31.6	6.0e-27
>prophage 96
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1295374	1296706	3928086	protease	Erwinia_phage(100.0%)	1	NA	NA
WP_029306786.1|1295374_1296706_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	30.1	2.1e-43
>prophage 97
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1340264	1341332	3928086		Dickeya_phage(100.0%)	1	NA	NA
WP_011515008.1|1340264_1341332_-	5-methyltetrahydrofolate--homocysteine methyltransferase	NA	A0A140XBC7	Dickeya_phage	44.6	2.7e-09
>prophage 98
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1350944	1351436	3928086		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_011515000.1|1350944_1351436_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	30.9	4.8e-14
>prophage 99
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1355371	1356211	3928086		Pithovirus(100.0%)	1	NA	NA
WP_008648922.1|1355371_1356211_+	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	28.5	7.7e-12
>prophage 100
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1367942	1369052	3928086		Mycobacterium_phage(100.0%)	1	NA	NA
WP_011514982.1|1367942_1369052_-	tyrosine recombinase XerC	NA	G1JX48	Mycobacterium_phage	31.9	1.2e-17
>prophage 101
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1387259	1393176	3928086		Ectocarpus_siliculosus_virus(50.0%)	3	NA	NA
WP_011514968.1|1387259_1390163_-	sensor histidine kinase KdpD	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.6	6.6e-10
WP_011514967.1|1390311_1390923_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_011514966.1|1390944_1393176_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	25.4	6.4e-21
>prophage 102
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1399402	1400589	3928086	transposase	Acinetobacter_phage(100.0%)	1	NA	NA
WP_085960481.1|1399402_1400589_-|transposase	IS3-like element ISRme13 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	39.7	3.2e-56
>prophage 103
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1412613	1415721	3928086		Salmonella_phage(50.0%)	3	NA	NA
WP_011514951.1|1412613_1414200_-	MFS transporter	NA	S4TR35	Salmonella_phage	23.4	2.4e-06
WP_011514950.1|1414407_1414848_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_011514949.1|1415037_1415721_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	28.7	2.1e-15
>prophage 104
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1419562	1420600	3928086		Planktothrix_phage(100.0%)	1	NA	NA
WP_011514944.1|1419562_1420600_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.0	2.7e-22
>prophage 105
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1428522	1432349	3928086		Bacillus_virus(50.0%)	2	NA	NA
WP_011514937.1|1428522_1431048_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	56.7	1.8e-11
WP_008650852.1|1431233_1432349_-	DNA polymerase III subunit beta	NA	R9TRR6	Rhizobium_phage	31.2	7.8e-44
>prophage 106
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1462618	1465771	3928086		Leptospira_phage(100.0%)	1	NA	NA
WP_011518004.1|1462618_1465771_-	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.6	8.9e-53
>prophage 107
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1478867	1479881	3928086		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_008642764.1|1478867_1479881_-	D-2-hydroxyacid dehydrogenase family protein	NA	M1HBE3	Paramecium_bursaria_Chlorella_virus	23.8	4.9e-13
>prophage 108
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1489335	1496727	3928086	tRNA	Acanthamoeba_polyphaga_mimivirus(25.0%)	6	NA	NA
WP_011517984.1|1489335_1492011_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	24.3	2.3e-17
WP_011517983.1|1492186_1492576_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_011517982.1|1492612_1493728_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.8	6.6e-19
WP_029306835.1|1493766_1494942_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011517980.1|1495106_1495613_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	41.8	1.8e-19
WP_029306836.1|1495728_1496727_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	31.6	6.6e-10
>prophage 109
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1523667	1526225	3928086		Indivirus(50.0%)	4	NA	NA
WP_029306842.1|1523667_1524399_-	aquaporin family protein	NA	A0A1V0SCL5	Indivirus	33.7	1.2e-05
WP_141192907.1|1524727_1525621_-	DUF2272 domain-containing protein	NA	NA	NA	NA	NA
WP_011517956.1|1525717_1525957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008640984.1|1525946_1526225_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	45.6	4.3e-12
>prophage 110
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1544669	1552173	3928086	holin	uncultured_virus(25.0%)	6	NA	NA
WP_011517944.1|1544669_1547111_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	36.3	4.9e-99
WP_008648660.1|1547107_1547527_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_029306851.1|1547633_1548554_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011517942.1|1548634_1550302_+|holin	choline dehydrogenase	holin	A0A1V0S9J5	Catovirus	27.7	3.0e-47
WP_008648866.1|1550661_1551435_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.4	1.5e-14
WP_008648867.1|1551447_1552173_+	ABC transporter ATP-binding protein	NA	A0A076FI99	Aureococcus_anophage	25.5	1.1e-06
>prophage 111
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1559917	1563537	3928086		Cedratvirus(33.33%)	3	NA	NA
WP_011517935.1|1559917_1561771_+	branched-chain amino acid ABC transporter ATP-binding protein/permease	NA	A0A1M7XV31	Cedratvirus	30.0	5.1e-16
WP_011517934.1|1561780_1562524_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	26.0	2.6e-11
WP_011517933.1|1562634_1563537_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	26.6	4.7e-23
>prophage 112
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1568550	1570263	3928086		Natrialba_phage(50.0%)	2	NA	NA
WP_011517928.1|1568550_1569324_+	ParA family protein	NA	Q8JL10	Natrialba_phage	35.1	1.3e-21
WP_029306859.1|1569369_1570263_+	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	35.0	1.6e-15
>prophage 113
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1578968	1579925	3928086		Acanthamoeba_polyphaga_lentillevirus(100.0%)	1	NA	NA
WP_011517920.1|1578968_1579925_+	alpha/beta hydrolase	NA	J3IZC7	Acanthamoeba_polyphaga_lentillevirus	27.1	2.0e-24
>prophage 114
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1596402	1606491	3928086		Bacillus_phage(66.67%)	7	NA	NA
WP_011517911.1|1596402_1599327_-	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	2.0e-261
WP_008647396.1|1599412_1599793_-	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_011517910.1|1599896_1601024_-	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_011517909.1|1601514_1601736_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_011517908.1|1602029_1604117_+	AAA family ATPase	NA	A7KV33	Bacillus_phage	36.6	4.2e-99
WP_017514019.1|1604441_1605173_+	response regulator	NA	NA	NA	NA	NA
WP_011517906.1|1605177_1606491_+	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	24.0	3.2e-12
>prophage 115
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1613022	1618268	3928086	tRNA	Pandoravirus(50.0%)	3	NA	NA
WP_011517899.1|1613022_1614414_+	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	28.0	9.1e-34
WP_029306872.1|1614462_1614867_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_011517897.1|1615073_1618268_+	cytochrome P450	NA	V5UQK0	Mycobacterium_phage	38.3	4.2e-82
>prophage 116
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1623910	1625422	3928086		Heterosigma_akashiwo_virus(100.0%)	1	NA	NA
WP_011517891.1|1623910_1625422_-	polyamine aminopropyltransferase	NA	A0A1C9C533	Heterosigma_akashiwo_virus	28.9	1.8e-14
>prophage 117
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1628824	1632371	3928086		Cyanophage(50.0%)	5	NA	NA
WP_011517887.1|1628824_1629211_+	adenosylmethionine decarboxylase	NA	A0A1D7SEZ2	Cyanophage	40.4	2.2e-14
WP_008646161.1|1629277_1629712_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_011517885.1|1630251_1630689_+	nucleoside diphosphate kinase regulator	NA	NA	NA	NA	NA
WP_008646158.1|1630977_1631325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011517883.1|1631477_1632371_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	36.7	1.1e-37
>prophage 118
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1637444	1639235	3928086		Micromonas_sp._RCC1109_virus(100.0%)	1	NA	NA
WP_011517879.1|1637444_1639235_-	glyoxylate carboligase	NA	E5EQ70	Micromonas_sp._RCC1109_virus	27.1	9.9e-41
>prophage 119
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1648903	1654968	3928086		uncultured_Caudovirales_phage(33.33%)	9	NA	NA
WP_029306874.1|1648903_1649464_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	39.3	1.2e-21
WP_011517868.1|1649666_1650026_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	44.4	8.1e-19
WP_008646132.1|1650117_1650348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011517867.1|1650555_1651203_-	exonuclease	NA	A0A2L0UZL4	Agrobacterium_phage	40.5	7.7e-36
WP_017510795.1|1651206_1651857_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_029306876.1|1652255_1652909_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	53.9	1.9e-18
WP_011517864.1|1652993_1653893_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	40.6	4.8e-36
WP_011517863.1|1653945_1654350_+	YraN family protein	NA	NA	NA	NA	NA
WP_008646124.1|1654380_1654968_+	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	34.0	2.0e-14
>prophage 120
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1680251	1681637	3928086		Burkholderia_virus(100.0%)	1	NA	NA
WP_011517838.1|1680251_1681637_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	51.7	2.5e-116
>prophage 121
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1720773	1723075	3928086	transposase	Escherichia_phage(100.0%)	2	NA	NA
WP_011515355.1|1720773_1722300_+|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	25.6	5.2e-14
WP_011515356.1|1722289_1723075_+	ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	36.2	3.0e-34
>prophage 122
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1736036	1737222	3928086	transposase	Acinetobacter_phage(100.0%)	1	NA	NA
WP_085960481.1|1736036_1737222_+|transposase	IS3-like element ISRme13 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	39.7	3.2e-56
>prophage 123
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1750516	1751707	3928086		Vibrio_phage(100.0%)	1	NA	NA
WP_011517774.1|1750516_1751707_+	elongation factor Tu	NA	M4M9V7	Vibrio_phage	57.8	9.9e-05
>prophage 124
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1755976	1764440	3928086		Chrysochromulina_ericina_virus(50.0%)	2	NA	NA
WP_008649192.1|1755976_1760083_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	27.5	1.2e-20
WP_011517781.1|1760198_1764440_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	28.1	9.8e-71
>prophage 125
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1768784	1775489	3928086		Acanthamoeba_polyphaga_moumouvirus(33.33%)	5	NA	NA
WP_029308637.1|1768784_1770632_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.5	1.2e-76
WP_008649178.1|1770935_1771313_+	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_011517776.1|1771520_1771991_+	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_011517775.1|1772109_1774221_+	elongation factor G	NA	A0A2K5B2A5	Erysipelothrix_phage	27.6	3.4e-56
WP_011517774.1|1774298_1775489_+	elongation factor Tu	NA	M4M9V7	Vibrio_phage	57.8	9.9e-05
>prophage 126
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1806917	1807451	3928086		Sinorhizobium_phage(100.0%)	1	NA	NA
WP_011517754.1|1806917_1807451_+	RNA polymerase sigma factor	NA	A0A0F6TH34	Sinorhizobium_phage	27.7	1.1e-06
>prophage 127
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1817990	1820123	3928086		Vibrio_phage(100.0%)	1	NA	NA
WP_011517740.1|1817990_1820123_+	type IV pilus secretin PilQ	NA	R9TEZ5	Vibrio_phage	28.9	6.7e-20
>prophage 128
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1832726	1833566	3928086		Bacillus_virus(100.0%)	1	NA	NA
WP_141192943.1|1832726_1833566_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	30.5	1.9e-18
>prophage 129
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1837195	1838146	3928086		Pithovirus(100.0%)	1	NA	NA
WP_008643041.1|1837195_1838146_+	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	31.8	9.0e-25
>prophage 130
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1850170	1854023	3928086		uncultured_Mediterranean_phage(100.0%)	3	NA	NA
WP_008643069.1|1850170_1850953_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	32.9	1.9e-28
WP_029309858.1|1851207_1852350_+	porin	NA	NA	NA	NA	NA
WP_011517715.1|1852826_1854023_-	Do family serine endopeptidase	NA	A0A1B1IRD3	uncultured_Mediterranean_phage	30.7	3.5e-10
>prophage 131
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1859185	1865627	3928086	protease	Pseudomonas_phage(33.33%)	6	NA	NA
WP_011517709.1|1859185_1859683_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	39.6	1.2e-20
WP_035821295.1|1859984_1861676_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	35.7	1.5e-14
WP_011517707.1|1862144_1863044_+	endo alpha-1,4 polygalactosaminidase	NA	NA	NA	NA	NA
WP_011517706.1|1863057_1863555_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_011517705.1|1863596_1863818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008643099.1|1863959_1865627_+	energy-dependent translational throttle protein EttA	NA	A0A2K9L0W2	Tupanvirus	26.3	5.8e-43
>prophage 132
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1872627	1874130	3928086		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011517697.1|1872627_1874130_+	acyl-CoA synthetase	NA	A0A2H4PQM9	Staphylococcus_phage	26.2	3.4e-26
>prophage 133
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1885658	1886741	3928086		Pseudomonas_phage(100.0%)	1	NA	NA
WP_029308602.1|1885658_1886741_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	46.6	1.1e-07
>prophage 134
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1902886	1912087	3928086		Acinetobacter_phage(50.0%)	9	NA	NA
WP_011517667.1|1902886_1904233_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	37.4	2.5e-28
WP_008647147.1|1904243_1905989_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_011517665.1|1906319_1906607_+	acylphosphatase	NA	NA	NA	NA	NA
WP_011517664.1|1906668_1907439_-	uracil-DNA glycosylase	NA	T2FKU3	Suid_alphaherpesvirus	48.0	4.9e-45
WP_011517663.1|1907438_1908062_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_011517662.1|1908069_1908882_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	51.5	1.6e-62
WP_011517661.1|1908888_1909971_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	46.2	1.6e-81
WP_008647587.1|1909967_1910537_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	65.8	1.2e-72
WP_008647586.1|1910560_1912087_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	30.9	1.2e-39
>prophage 135
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1942633	1952123	3928086		Planktothrix_phage(33.33%)	7	NA	NA
WP_011517638.1|1942633_1943632_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	27.9	1.8e-15
WP_011517637.1|1943628_1944693_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_011517636.1|1944751_1945948_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011517633.1|1946268_1948374_+	molybdopterin oxidoreductase family protein	NA	A0A077SK27	Escherichia_phage	27.6	6.4e-47
WP_011517632.1|1948370_1949528_+	aminopeptidase	NA	NA	NA	NA	NA
WP_011517631.1|1949557_1950259_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011517630.1|1950440_1952123_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	27.1	4.0e-36
>prophage 136
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1978409	1981679	3928086		Cyanophage(50.0%)	4	NA	NA
WP_011517616.1|1978409_1978916_+	peroxiredoxin	NA	A0A0C5AE74	Cyanophage	41.6	4.0e-24
WP_008650320.1|1979069_1979987_+	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
WP_011517615.1|1980134_1980638_-	DUF721 domain-containing protein	NA	NA	NA	NA	NA
WP_011517614.1|1980746_1981679_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	47.2	2.0e-24
>prophage 137
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	1999221	2000340	3928086		Streptococcus_phage(100.0%)	1	NA	NA
WP_008647250.1|1999221_2000340_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	43.9	3.0e-64
>prophage 138
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2003667	2005309	3928086		Ralstonia_phage(50.0%)	2	NA	NA
WP_011517599.1|2003667_2004423_+	lytic transglycosylase domain-containing protein	NA	A0A1L7N0Z2	Ralstonia_phage	35.6	1.2e-08
WP_011517598.1|2004427_2005309_+	hypothetical protein	NA	A0A2N9QVW2	Dishui_lake_phycodnavirus	34.6	5.2e-19
>prophage 139
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2016208	2023577	3928086		Pseudomonas_phage(33.33%)	5	NA	NA
WP_011517588.1|2016208_2019148_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.8	2.0e-168
WP_011517587.1|2019288_2020476_+	ribonucleotide-diphosphate reductase subunit beta	NA	C9DFZ8	Deftia_phage	28.1	2.4e-27
WP_029307157.1|2020569_2021529_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011517585.1|2021647_2022610_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_011517584.1|2022638_2023577_-	recombination-associated protein RdgC	NA	A0A218M310	Acidovorax_phage	42.2	3.2e-59
>prophage 140
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2046853	2047594	3928086		Bacillus_phage(100.0%)	1	NA	NA
WP_008645603.1|2046853_2047594_+	3-oxoacyl-ACP reductase FabG	NA	W8CYX9	Bacillus_phage	40.8	9.5e-06
>prophage 141
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2056167	2056665	3928086		Pseudomonas_phage(100.0%)	1	NA	NA
WP_011517552.1|2056167_2056665_-	CinA family protein	NA	B5TK85	Pseudomonas_phage	47.7	7.0e-29
>prophage 142
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2062381	2063518	3928086		Salmonella_phage(100.0%)	1	NA	NA
WP_003056224.1|2062381_2063518_+	DUF1016 domain-containing protein	NA	A0A0U2BZN7	Salmonella_phage	63.6	5.1e-51
>prophage 143
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2070288	2081844	3928086		Sphingobium_phage(40.0%)	15	NA	NA
WP_003056217.1|2070288_2070639_+	DUF2958 domain-containing protein	NA	A0A1W6DX76	Sphingobium_phage	60.0	8.4e-29
WP_011517545.1|2070702_2070981_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003056213.1|2071123_2071423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049799789.1|2071570_2071792_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003056211.1|2072358_2073186_+	DUF945 domain-containing protein	NA	A0A2C9CYF8	Yersinia_phage	37.7	2.4e-42
WP_003056209.1|2073261_2075328_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA	NA
WP_003056207.1|2075390_2075600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011517543.1|2075730_2076249_-	N-acetyltransferase	NA	A0A1P8CWJ6	Bacillus_phage	32.8	4.4e-10
WP_003056203.1|2077070_2077385_+	DUF736 domain-containing protein	NA	NA	NA	NA	NA
WP_003056202.1|2077738_2078032_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003056199.1|2078255_2078603_+	DUF2958 domain-containing protein	NA	A0A1W6DX76	Sphingobium_phage	46.4	7.1e-20
WP_011517541.1|2078944_2079703_+	DUF2285 domain-containing protein	NA	NA	NA	NA	NA
WP_023123353.1|2079786_2080068_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011517539.1|2080094_2080952_+	replication initiator protein A	NA	NA	NA	NA	NA
WP_003056189.1|2081205_2081844_+	AAA family ATPase	NA	B0ZSI1	Halomonas_phage	39.6	5.6e-31
>prophage 144
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2087206	2090602	3928086		Bacillus_phage(50.0%)	4	NA	NA
WP_011517534.1|2087206_2087872_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	32.4	3.5e-23
WP_011517533.1|2087875_2089288_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_003056165.1|2089301_2090009_-	VIT family protein	NA	NA	NA	NA	NA
WP_011517532.1|2090050_2090602_-	cytochrome b	NA	A0A0U2QLA7	Escherichia_phage	42.1	3.1e-17
>prophage 145
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2098930	2099545	3928086		Shigella_phage(100.0%)	1	NA	NA
WP_011517527.1|2098930_2099545_+	recombinase family protein	NA	A0A0C4UR34	Shigella_phage	47.6	6.0e-38
>prophage 146
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2109216	2110056	3928086		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
WP_003056095.1|2109216_2110056_+	phosphonate ABC transporter ATP-binding protein	NA	F2Y302	Organic_Lake_phycodnavirus	27.4	3.6e-09
>prophage 147
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2113294	2114833	3928086	transposase	Bacillus_phage(100.0%)	1	NA	NA
WP_003056089.1|2113294_2114833_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	37.1	6.1e-47
>prophage 148
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2129276	2134979	3928086	tRNA	Staphylococcus_phage(50.0%)	4	NA	NA
WP_011517508.1|2129276_2131898_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	40.6	1.3e-174
WP_008641875.1|2131934_2132450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011517507.1|2132501_2133572_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_011517506.1|2133698_2134979_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	43.6	9.8e-83
>prophage 149
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2147148	2148525	3928086		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_008641901.1|2147148_2148525_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	46.5	8.0e-107
>prophage 150
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2157743	2162489	3928086	tRNA	uncultured_Mediterranean_phage(100.0%)	4	NA	NA
WP_011517487.1|2157743_2158718_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	37.3	7.3e-46
WP_029310041.1|2158742_2160608_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_011517484.1|2160812_2161139_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	39.3	1.3e-10
WP_008641921.1|2161358_2162489_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.0	3.7e-86
>prophage 151
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2166011	2167898	3928086		Lactobacillus_phage(50.0%)	3	NA	NA
WP_011517481.1|2166011_2166968_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.1	7.7e-08
WP_029307173.1|2167135_2167327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008641932.1|2167412_2167898_+	DNA starvation/stationary phase protection protein	NA	A0A2H4N7L5	Lake_Baikal_phage	38.3	5.2e-21
>prophage 152
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2172841	2173336	3928086		Canarypox_virus(100.0%)	1	NA	NA
WP_008641942.1|2172841_2173336_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	39.9	4.7e-25
>prophage 153
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2184131	2200840	3928086	tRNA	Hokovirus(11.11%)	15	NA	NA
WP_011517467.1|2184131_2186078_+	molecular chaperone DnaK	NA	A0A1V0SH73	Hokovirus	49.5	1.4e-144
WP_008641963.1|2186252_2187392_+	molecular chaperone DnaJ	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	35.5	1.2e-23
WP_049799786.1|2187475_2189371_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	34.9	1.1e-50
WP_011517465.1|2189401_2190091_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.5	1.9e-16
WP_011517464.1|2190087_2190786_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_011517463.1|2190793_2191615_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.5e-36
WP_011517462.1|2191751_2192393_-	deoxynucleoside kinase	NA	A0A1J0F9Q3	Only_Syngen_Nebraska_virus	27.0	6.3e-06
WP_011517461.1|2192416_2192938_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_011517460.1|2192939_2194529_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B0V011	Roseobacter_phage	31.2	4.5e-21
WP_011517459.1|2194530_2195205_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_011517458.1|2195328_2196036_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_008641981.1|2196228_2197281_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	45.3	5.4e-71
WP_011517457.1|2197352_2197844_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011517456.1|2197908_2198856_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_011517455.1|2198872_2200840_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.2	4.4e-82
>prophage 155
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2302178	2303483	3928086		Catovirus(100.0%)	1	NA	NA
WP_008644107.1|2302178_2303483_+	sulfate adenylyltransferase subunit 1	NA	A0A1V0SA87	Catovirus	27.3	1.9e-17
>prophage 156
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2307202	2308735	3928086		Mycoplasma_phage(100.0%)	1	NA	NA
WP_011517376.1|2307202_2308735_+	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	41.2	3.3e-53
>prophage 157
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2320629	2322183	3928086		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011517362.1|2320629_2322183_+	malonyl-CoA synthase	NA	A0A2H4PQM9	Staphylococcus_phage	26.8	1.4e-30
>prophage 158
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2325425	2327441	3928086		Acinetobacter_phage(100.0%)	1	NA	NA
WP_035820517.1|2325425_2327441_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	34.6	1.5e-05
>prophage 159
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2337735	2338398	3928086		Halomonas_phage(100.0%)	1	NA	NA
WP_011517348.1|2337735_2338398_+	ParA family protein	NA	B0ZSI1	Halomonas_phage	29.0	1.7e-14
>prophage 160
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2349423	2352477	3928086	tRNA	Indivirus(50.0%)	2	NA	NA
WP_011517339.1|2349423_2351496_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.2	2.0e-53
WP_008651772.1|2351841_2352477_-	OmpA family protein	NA	G3M9Z0	Bacillus_virus	37.4	1.5e-07
>prophage 161
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2358503	2365981	3928086		Escherichia_phage(33.33%)	7	NA	NA
WP_011517333.1|2358503_2361581_+	molybdopterin-dependent oxidoreductase	NA	A0A077SK27	Escherichia_phage	25.6	2.0e-20
WP_011517332.1|2361595_2362276_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_011517331.1|2362272_2362506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011517330.1|2362525_2363719_+	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_011517328.1|2363816_2364392_+	superoxide dismutase family protein	NA	Q0IKZ0	Leucania_separata_nucleopolyhedrovirus	43.1	2.6e-19
WP_011517327.1|2364454_2365291_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA	NA
WP_008646296.1|2365414_2365981_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	69.9	9.0e-73
>prophage 162
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2380184	2386452	3928086		Enterobacteria_phage(33.33%)	7	NA	NA
WP_011517319.1|2380184_2381411_-	acyltransferase	NA	A0A088CPR9	Enterobacteria_phage	32.8	5.5e-43
WP_011517318.1|2381495_2383037_-	deoxyribodipyrimidine photo-lyase	NA	A0A1V0SGL1	Hokovirus	29.7	1.5e-58
WP_011517317.1|2383102_2383819_+	pseudouridine synthase	NA	NA	NA	NA	NA
WP_008646285.1|2383906_2384479_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_029307246.1|2384471_2384909_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_011517314.1|2384905_2385430_+	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
WP_008646281.1|2385480_2386452_+	aspartate carbamoyltransferase	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	34.4	3.6e-29
>prophage 163
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2391183	2394599	3928086		Enterobacteria_phage(75.0%)	4	NA	NA
WP_011517309.1|2391183_2392248_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	48.5	8.4e-88
WP_011517308.1|2392237_2393158_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	34.3	4.6e-26
WP_011517307.1|2393169_2394048_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	59.2	3.7e-97
WP_011517306.1|2394044_2394599_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	59.2	8.3e-55
>prophage 164
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2397876	2404761	3928086		uncultured_marine_virus(33.33%)	5	NA	NA
WP_011517301.1|2397876_2398995_+	glycosyltransferase family 4 protein	NA	A0A0F7L8V0	uncultured_marine_virus	33.9	2.0e-07
WP_029309739.1|2399050_2400196_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_011517299.1|2400372_2400966_+	sugar transferase	NA	NA	NA	NA	NA
WP_011517297.1|2401639_2402815_+	DegT/DnrJ/EryC1/StrS aminotransferase family protein	NA	A0A2K9L0G1	Tupanvirus	46.6	5.4e-104
WP_152560165.1|2402886_2404761_+	NAD-dependent epimerase/dehydratase family protein	NA	L7Y3T9	Megavirus	23.0	4.8e-14
>prophage 165
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2412037	2413423	3928086		Bacillus_phage(100.0%)	1	NA	NA
WP_011517288.1|2412037_2413423_+	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	29.9	1.4e-55
>prophage 166
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2436576	2442701	3928086		Staphylococcus_phage(75.0%)	7	NA	NA
WP_011517267.1|2436576_2437086_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	35.3	1.1e-18
WP_011517266.1|2437164_2438280_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	36.5	3.1e-53
WP_011517265.1|2438515_2439550_+	CoA transferase	NA	NA	NA	NA	NA
WP_104670064.1|2439618_2440455_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011517263.1|2440598_2440790_+	putative motility protein	NA	NA	NA	NA	NA
WP_011517262.1|2440919_2441552_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	36.4	3.5e-25
WP_011517261.1|2441579_2442701_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	33.5	4.4e-47
>prophage 167
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2448249	2449497	3928086		Aeromonas_phage(100.0%)	1	NA	NA
WP_029307301.1|2448249_2449497_-	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	52.1	4.9e-95
>prophage 168
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2455651	2459055	3928086		Vibrio_phage(50.0%)	3	NA	NA
WP_011517247.1|2455651_2456335_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A126HGA1	Vibrio_phage	32.9	4.3e-21
WP_011517246.1|2456405_2457521_+	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_080710327.1|2457891_2459055_+	site-specific DNA-methyltransferase	NA	H9YPY1	environmental_Halophage	32.2	1.6e-47
>prophage 169
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2464399	2466298	3928086		Mycobacterium_phage(100.0%)	1	NA	NA
WP_011517235.1|2464399_2466298_+	DNA primase activity	NA	A0A0M4R1L8	Mycobacterium_phage	29.2	2.6e-31
>prophage 170
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2480898	2482140	3928086		Orpheovirus(100.0%)	1	NA	NA
WP_008646259.1|2480898_2482140_-	class I SAM-dependent methyltransferase	NA	A0A2I2L5L3	Orpheovirus	35.9	9.6e-43
>prophage 171
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2487064	2506957	3928086	tRNA	Bacillus_phage(25.0%)	16	NA	NA
WP_085960491.1|2487064_2487883_+|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	tRNA	S4VW33	Pandoravirus	34.4	8.0e-14
WP_011517214.1|2487871_2488450_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_011517213.1|2488583_2489066_+	bacteriohemerythrin	NA	NA	NA	NA	NA
WP_011517212.1|2489097_2489940_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	40.8	2.8e-14
WP_011517211.1|2490174_2491875_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	25.6	3.0e-15
WP_080710328.1|2491910_2492663_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_008649807.1|2492741_2493509_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_008649808.1|2493696_2494017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011517207.1|2494125_2495025_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	46.5	4.8e-68
WP_011517206.1|2495139_2498007_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.5	5.1e-140
WP_011517205.1|2498225_2500589_+	AAA family ATPase	NA	A7KV33	Bacillus_phage	35.3	1.7e-104
WP_011517204.1|2500640_2501444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011517203.1|2501450_2502437_-	homoserine kinase	NA	NA	NA	NA	NA
WP_008649820.1|2502606_2503026_-	DUF2782 domain-containing protein	NA	NA	NA	NA	NA
WP_008649826.1|2503200_2503920_-	TIGR00730 family Rossman fold protein	NA	A0A1D8KU27	Synechococcus_phage	39.6	3.2e-22
WP_011517202.1|2504152_2506957_+	DNA polymerase I	NA	A0A218MKQ4	uncultured_virus	30.7	8.7e-68
>prophage 172
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2520697	2528905	3928086	tRNA	Moraxella_phage(25.0%)	7	NA	NA
WP_008649849.1|2520697_2521738_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	54.0	5.7e-97
WP_029309728.1|2521887_2523129_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_008649856.1|2523290_2523503_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_011517189.1|2523627_2524077_+	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	45.2	3.8e-18
WP_011517187.1|2524304_2526146_+	DNA primase	NA	A0A1S5RG58	Helicobacter_phage	33.3	1.1e-47
WP_029307327.1|2526228_2526609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029309727.1|2526625_2528905_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.5	2.3e-34
>prophage 173
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2540770	2542060	3928086		Moumouvirus(100.0%)	1	NA	NA
WP_011517173.1|2540770_2542060_+	hypothetical protein	NA	M1PNR1	Moumouvirus	41.0	6.1e-16
>prophage 174
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2555106	2556603	3928086		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_029307339.1|2555106_2556603_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.2	4.8e-49
>prophage 175
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2563293	2563911	3928086		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_011517154.1|2563293_2563911_+	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	39.5	6.7e-29
>prophage 176
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2567714	2569812	3928086		Ralstonia_phage(33.33%)	3	NA	NA
WP_011517149.1|2567714_2568215_-	dihydrofolate reductase	NA	A0A0A8JB64	Ralstonia_phage	46.1	1.6e-28
WP_011517148.1|2568211_2569006_-	thymidylate synthase	NA	A6M9A2	Geobacillus_virus	68.6	9.6e-113
WP_011517147.1|2569113_2569812_-	TerC family protein	NA	W8EBD0	Pseudomonas_phage	43.9	1.2e-26
>prophage 177
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2572935	2574840	3928086		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_011517144.1|2572935_2574840_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.8	5.2e-48
>prophage 178
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2581108	2582657	3928086	transposase	Ralstonia_phage(50.0%)	2	NA	NA
WP_011517133.1|2581108_2581318_+	hypothetical protein	NA	A0A2D2W511	Ralstonia_phage	51.6	3.7e-08
WP_085959070.1|2581459_2582657_+|transposase	IS3-like element IS1087B family transposase	transposase	A0A1B0Z042	Pseudomonas_phage	61.9	6.5e-97
>prophage 179
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2593300	2593630	3928086		Acinetobacter_phage(100.0%)	1	NA	NA
WP_011517120.1|2593300_2593630_-	multidrug transporter	NA	E5E3Y9	Acinetobacter_phage	30.8	4.1e-09
>prophage 180
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2614082	2615633	3928086		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011517101.1|2614082_2615633_+	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	24.4	1.8e-35
>prophage 181
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2618742	2630881	3928086		Bacillus_virus(40.0%)	8	NA	NA
WP_011517099.1|2618742_2620668_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	28.7	2.3e-43
WP_011517098.1|2620864_2622076_-	MFS transporter	NA	NA	NA	NA	NA
WP_008649957.1|2622277_2624272_+	type IIA DNA topoisomerase subunit B	NA	G3M9Z3	Bacillus_virus	33.5	4.9e-89
WP_029307360.1|2624341_2625127_+	transglycosylase SLT domain-containing protein	NA	K4NWI2	Pseudomonas_phage	34.6	2.5e-12
WP_011517095.1|2625281_2627612_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	36.1	7.7e-78
WP_011517094.1|2627931_2628513_+	chromate transporter	NA	NA	NA	NA	NA
WP_011517093.1|2628509_2629040_+	chromate transporter	NA	NA	NA	NA	NA
WP_011517092.1|2629048_2630881_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.9	2.6e-28
>prophage 182
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2640392	2642294	3928086		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_008648084.1|2640392_2642294_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.0	9.9e-116
>prophage 183
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2671746	2673215	3928086		Bacillus_virus(50.0%)	2	NA	NA
WP_008649372.1|2671746_2672514_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.0	4.0e-15
WP_011517064.1|2672513_2673215_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	7.3e-16
>prophage 184
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2684507	2685443	3928086		Phaeocystis_globosa_virus(100.0%)	1	NA	NA
WP_011517056.1|2684507_2685443_+	site-specific DNA-methyltransferase	NA	R4THJ7	Phaeocystis_globosa_virus	31.2	9.8e-32
>prophage 185
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2690314	2694908	3928086		Mollivirus(33.33%)	4	NA	NA
WP_008648427.1|2690314_2691847_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	40.5	1.4e-83
WP_011517050.1|2691883_2693092_+	O-succinylhomoserine sulfhydrylase	NA	S4VRH6	Pandoravirus	30.2	7.0e-14
WP_011517049.1|2693137_2693995_-	nodulation protein NodJ	NA	NA	NA	NA	NA
WP_011517048.1|2693996_2694908_-	Nod factor export ATP-binding protein I	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.5	1.3e-28
>prophage 186
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2698251	2705262	3928086		Bacillus_virus(33.33%)	7	NA	NA
WP_008648409.1|2698251_2699355_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	26.7	4.7e-17
WP_008648407.1|2699431_2699755_-	ferredoxin family protein	NA	NA	NA	NA	NA
WP_011517043.1|2700173_2700704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029307390.1|2700791_2701970_+	nicotinate phosphoribosyltransferase	NA	A0A2L0UZQ6	Agrobacterium_phage	35.4	2.5e-56
WP_011517041.1|2702045_2702732_+	lactate utilization protein C	NA	NA	NA	NA	NA
WP_011517040.1|2702830_2704261_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_029307391.1|2704266_2705262_+	D-glycerate dehydrogenase	NA	M1I1Q8	Acanthocystis_turfacea_Chlorella_virus	27.2	9.4e-17
>prophage 187
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2714737	2718047	3928086		Bodo_saltans_virus(50.0%)	4	NA	NA
WP_029310031.1|2714737_2715748_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	27.6	5.8e-06
WP_011517032.1|2715806_2716466_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_011517031.1|2716458_2716842_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_011517030.1|2716883_2718047_+	S49 family peptidase	NA	A0A219YA27	Aeromonas_phage	30.5	1.8e-11
>prophage 188
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2723882	2735063	3928086	protease	Trichoplusia_ni_ascovirus(16.67%)	11	NA	NA
WP_011517022.1|2723882_2724632_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.7	3.4e-19
WP_008644813.1|2724801_2725041_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	45.9	1.4e-11
WP_011517021.1|2725252_2726485_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_008644807.1|2726740_2727340_+	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	28.7	2.0e-06
WP_011517020.1|2727476_2728133_+	anti-sigma factor	NA	NA	NA	NA	NA
WP_011517019.1|2728141_2729221_+	sugar dehydratase	NA	NA	NA	NA	NA
WP_011517017.1|2729350_2730856_+|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	30.2	2.5e-21
WP_011517015.1|2731103_2732897_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.0	1.4e-23
WP_011517014.1|2732942_2733842_+	signal peptidase I	NA	NA	NA	NA	NA
WP_029307403.1|2733940_2734288_+	DUF4845 domain-containing protein	NA	NA	NA	NA	NA
WP_008644793.1|2734292_2735063_+	ribonuclease III	NA	A0A2P0VNZ5	Tetraselmis_virus	41.3	1.6e-16
>prophage 189
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2764432	2772416	3928086	transposase	Bacillus_virus(33.33%)	5	NA	NA
WP_003149817.1|2764432_2765056_-	cytochrome c biogenesis heme-transporting ATPase CcmA	NA	G3M9Y6	Bacillus_virus	27.4	1.5e-07
WP_003149815.1|2765224_2765893_+	response regulator	NA	NA	NA	NA	NA
WP_011516271.1|2766966_2767995_-|transposase	IS30-like element IS1088 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.6	3.0e-42
WP_003149811.1|2768534_2770133_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_011517003.1|2770157_2772416_-	cation-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	27.1	2.8e-48
>prophage 190
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2803458	2805433	3928086		Acidithiobacillus_phage(66.67%)	3	NA	NA
WP_003050245.1|2803458_2803929_+	helix-turn-helix domain-containing protein	NA	K4ICM4	Acidithiobacillus_phage	53.5	5.2e-34
WP_003153636.1|2803925_2804501_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	58.0	2.3e-55
WP_003050256.1|2804518_2805433_+	AAA family ATPase	NA	A0A0K1Y7P8	Apis_mellifera_filamentous_virus	29.0	4.0e-06
>prophage 191
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2824012	2829828	3928086		Yersinia_phage(33.33%)	5	NA	NA
WP_003116824.1|2824012_2824840_-	DUF945 domain-containing protein	NA	A0A2C9CYF8	Yersinia_phage	36.8	2.3e-45
WP_003116825.1|2824985_2825891_-	DUF3577 domain-containing protein	NA	NA	NA	NA	NA
WP_003098923.1|2826201_2826486_-	hypothetical protein	NA	Q6JIG5	Burkholderia_virus	73.8	2.1e-30
WP_031629745.1|2826793_2827078_-	DUF3085 domain-containing protein	NA	NA	NA	NA	NA
WP_003098932.1|2828139_2829828_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.8	3.0e-39
>prophage 192
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2836524	2844392	3928086		Streptococcus_phage(50.0%)	4	NA	NA
WP_005408895.1|2836524_2839479_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	43.3	1.5e-150
WP_003098965.1|2839528_2839927_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003098972.1|2841002_2841638_+	cation transporter	NA	NA	NA	NA	NA
WP_003116834.1|2842361_2844392_-	DNA topoisomerase III	NA	A0A0G2Y4W4	Acanthamoeba_polyphaga_mimivirus	23.0	1.5e-13
>prophage 193
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2850676	2851552	3928086		Mycobacterium_phage(100.0%)	1	NA	NA
WP_003098988.1|2850676_2851552_-	ParA family protein	NA	W8EH12	Mycobacterium_phage	31.3	9.5e-05
>prophage 194
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2862304	2874917	3928086	transposase	Apis_mellifera_filamentous_virus(25.0%)	8	NA	NA
WP_011516980.1|2862304_2864620_+	AAA family ATPase	NA	A0A0K1Y7P8	Apis_mellifera_filamentous_virus	32.5	9.9e-09
WP_011516979.1|2864609_2865422_-	glutamate racemase	NA	NA	NA	NA	NA
WP_008642400.1|2865598_2867122_-	fumarate hydratase	NA	NA	NA	NA	NA
WP_011516977.1|2867274_2867829_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.0	2.9e-23
WP_011516976.1|2867922_2868849_-	DMT family transporter	NA	NA	NA	NA	NA
WP_011516974.1|2869145_2871128_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	43.0	4.6e-79
WP_011516973.1|2871236_2873288_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_011515352.1|2873666_2874917_+|transposase	IS256-like element IS1090 family transposase	transposase	A0A218MNI5	uncultured_virus	42.8	4.0e-41
>prophage 195
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2880029	2880743	3928086		Bacillus_phage(100.0%)	1	NA	NA
WP_011516964.1|2880029_2880743_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	40.8	7.2e-19
>prophage 196
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2884998	2887572	3928086		Acanthocystis_turfacea_chlorella_virus(100.0%)	1	NA	NA
WP_011516958.1|2884998_2887572_-	UDP-forming cellulose synthase catalytic subunit	NA	A7KA83	Acanthocystis_turfacea_chlorella_virus	31.6	4.0e-27
>prophage 197
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2902424	2903705	3928086		Bacillus_phage(100.0%)	1	NA	NA
WP_011516948.1|2902424_2903705_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	34.8	1.9e-09
>prophage 198
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2912251	2914478	3928086		Planktothrix_phage(50.0%)	2	NA	NA
WP_011516940.1|2912251_2913376_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	26.3	7.9e-12
WP_011516939.1|2913377_2914478_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	27.9	4.0e-16
>prophage 199
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2919778	2921743	3928086		Bacillus_phage(100.0%)	1	NA	NA
WP_035821978.1|2919778_2921743_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	34.9	3.2e-16
>prophage 200
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2926779	2927568	3928086		Bacillus_virus(100.0%)	1	NA	NA
WP_011516928.1|2926779_2927568_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	7.7e-30
>prophage 201
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2937073	2941816	3928086		Acanthocystis_turfacea_Chlorella_virus(33.33%)	3	NA	NA
WP_011516918.1|2937073_2939812_-	cation-transporting P-type ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	28.1	2.2e-76
WP_011516916.1|2940630_2941356_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	40.8	9.9e-40
WP_011516915.1|2941378_2941816_-	ribonuclease HI	NA	H8ZJH4	Ostreococcus_tauri_virus	46.8	1.5e-30
>prophage 202
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2946503	2948393	3928086		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011516910.1|2946503_2948393_+	propionate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	30.9	1.9e-58
>prophage 203
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2953793	2957795	3928086		Staphylococcus_phage(50.0%)	4	NA	NA
WP_011516905.1|2953793_2955455_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	30.6	3.4e-51
WP_011516904.1|2955457_2955877_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_011516903.1|2955912_2956326_+	RidA family protein	NA	NA	NA	NA	NA
WP_011516902.1|2956646_2957795_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	32.2	2.5e-45
>prophage 204
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2964639	2975990	3928086		Bacillus_phage(50.0%)	10	NA	NA
WP_008641654.1|2964639_2966541_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.3	2.8e-110
WP_011516894.1|2966653_2967523_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	36.0	1.1e-26
WP_011516893.1|2967528_2968872_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_011516892.1|2969175_2970207_+	phosphate ABC transporter substrate-binding protein PstS	NA	A0A222YW41	Synechococcus_phage	38.6	5.7e-49
WP_011516891.1|2970320_2971286_+	phosphate ABC transporter permease PstC	NA	NA	NA	NA	NA
WP_011516890.1|2971282_2972185_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_008641660.1|2972206_2972995_+	phosphate ABC transporter ATP-binding protein PstB	NA	W8CYL7	Bacillus_phage	32.4	9.1e-15
WP_008641661.1|2973065_2973770_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_008641662.1|2973806_2974514_+	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	39.8	7.9e-34
WP_011516889.1|2974637_2975990_+	phosphate regulon sensor histidine kinase PhoR	NA	W8CYF6	Bacillus_phage	36.2	6.8e-34
>prophage 205
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	2983229	2984480	3928086		Bacillus_phage(100.0%)	1	NA	NA
WP_011516882.1|2983229_2984480_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	34.9	3.5e-16
>prophage 206
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3008687	3011081	3928086		Hokovirus(100.0%)	1	NA	NA
WP_049799783.1|3008687_3011081_-	transporter substrate-binding domain-containing protein	NA	A0A1V0SGX0	Hokovirus	28.6	4.9e-35
>prophage 207
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3018653	3020627	3928086		Tetraselmis_virus(100.0%)	1	NA	NA
WP_011516855.1|3018653_3020627_-	MBL fold metallo-hydrolase	NA	A0A2P0VMX1	Tetraselmis_virus	43.8	9.3e-141
>prophage 208
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3026753	3030525	3928086		Planktothrix_phage(33.33%)	3	NA	NA
WP_011516850.1|3026753_3028403_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.5	4.3e-22
WP_008641698.1|3028760_3029441_+	C40 family peptidase	NA	B6V2P9	Bacillus_phage	39.3	4.0e-19
WP_011516849.1|3029574_3030525_-	patatin-like phospholipase family protein	NA	A0A1X7QFZ0	Faustovirus	29.2	2.2e-07
>prophage 209
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3039593	3039920	3928086		Streptomyces_phage(100.0%)	1	NA	NA
WP_008647939.1|3039593_3039920_-	thioredoxin TrxA	NA	A0A1J0GW78	Streptomyces_phage	45.2	8.1e-18
>prophage 210
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3047600	3052583	3928086		Loktanella_phage(50.0%)	2	NA	NA
WP_011516841.1|3047600_3050099_+	adenosylcobalamin-dependent ribonucleoside-diphosphate reductase	NA	M4QT32	Loktanella_phage	41.1	1.9e-154
WP_011516840.1|3050195_3052583_+	DNA polymerase III subunit gamma/tau	NA	A0A1L2BWV7	Bacteriophage	39.2	4.8e-43
>prophage 211
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3059240	3070625	3928086		uncultured_Mediterranean_phage(28.57%)	12	NA	NA
WP_011516834.1|3059240_3060053_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	2.6e-33
WP_011516833.1|3060080_3060872_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_029309763.1|3060940_3061915_-	NADPH:quinone oxidoreductase family protein	NA	NA	NA	NA	NA
WP_011516831.1|3062093_3062846_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.6	3.6e-69
WP_011516830.1|3062934_3063843_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	47.8	1.7e-33
WP_011516829.1|3063851_3064739_+	peptidoglycan DD-metalloendopeptidase family protein	NA	D7RWE0	Brochothrix_phage	33.3	1.3e-06
WP_011516828.1|3064745_3065906_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.8	1.4e-32
WP_011516827.1|3065902_3066739_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_011516826.1|3066740_3067595_-	endonuclease	NA	NA	NA	NA	NA
WP_029309762.1|3067685_3069086_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	25.3	6.6e-24
WP_011516824.1|3069151_3069859_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA	NA
WP_011516823.1|3070199_3070625_+	nucleoside-diphosphate kinase	NA	A0A167REB2	Powai_lake_megavirus	42.1	3.9e-20
>prophage 212
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3085587	3094460	3928086		Megavirus(25.0%)	8	NA	NA
WP_011516809.1|3085587_3086931_+	adenylosuccinate synthase	NA	G5CQQ4	Megavirus	36.7	6.0e-75
WP_029307566.1|3087057_3087627_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_011516807.1|3087756_3088368_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011516806.1|3088431_3088866_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_011516805.1|3089285_3091916_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	33.2	3.0e-70
WP_011516804.1|3091959_3092703_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_011516803.1|3092705_3093440_+	NAD-dependent deacylase	NA	H6W7Z8	Escherichia_phage	30.5	4.2e-14
WP_011516802.1|3093503_3094460_-	transaldolase	NA	M4QQ61	Prochlorococcus_phage	34.1	2.1e-13
>prophage 213
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3106960	3108514	3928086		Escherichia_phage(100.0%)	1	NA	NA
WP_011516788.1|3106960_3108514_-	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.5	3.7e-20
>prophage 214
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3117109	3122179	3928086		Catovirus(50.0%)	2	NA	NA
WP_011516782.1|3117109_3121060_+	ATP-dependent RNA helicase HrpA	NA	A0A1V0SBU4	Catovirus	28.9	3.6e-51
WP_011516781.1|3121192_3122179_+	beta-propeller fold lactonase family protein	NA	A0A2H4JCI3	uncultured_Caudovirales_phage	67.3	9.4e-17
>prophage 215
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3129018	3130182	3928086		Ectocarpus_siliculosus_virus(100.0%)	1	NA	NA
WP_011516771.1|3129018_3130182_+	signal transduction histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	24.6	1.2e-07
>prophage 216
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3138222	3140060	3928086		Planktothrix_phage(50.0%)	2	NA	NA
WP_011516763.1|3138222_3139326_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	32.3	2.0e-23
WP_011516762.1|3139322_3140060_+	glycerophosphodiester phosphodiesterase	NA	A0A1J0F961	Only_Syngen_Nebraska_virus	32.3	3.4e-19
>prophage 217
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3144671	3150011	3928086		Erysipelothrix_phage(50.0%)	3	NA	NA
WP_011516759.1|3144671_3146096_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.2	8.1e-46
WP_011516758.1|3146181_3147279_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_011516756.1|3147425_3150011_+	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	30.5	2.8e-76
>prophage 218
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3157835	3158744	3928086		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_011516749.1|3157835_3158744_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.7	7.3e-24
>prophage 219
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3163040	3198202	3928086	transposase,integrase,capsid,tRNA	Bodo_saltans_virus(20.0%)	37	3184548:3184607	3194265:3197346
WP_011516746.1|3163040_3165980_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	23.8	5.8e-22
WP_011516745.1|3166044_3166416_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_011516744.1|3166475_3167420_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_011516743.1|3167494_3169108_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_011516742.1|3169127_3170369_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_035820801.1|3170415_3171930_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_035820798.1|3172000_3172507_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011516738.1|3172702_3174526_+	translational GTPase TypA	NA	NA	NA	NA	NA
WP_035820795.1|3174612_3175524_-	sterol desaturase family protein	NA	NA	NA	NA	NA
WP_029309788.1|3175669_3176752_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_011516735.1|3176845_3177406_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	34.0	6.1e-13
WP_029310307.1|3177904_3178249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011516733.1|3178389_3178794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152560298.1|3178831_3179419_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080710403.1|3179366_3180302_+	DUF2971 domain-containing protein	NA	NA	NA	NA	NA
WP_152560299.1|3180367_3180949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_035822924.1|3181205_3182546_-|capsid	phage major capsid protein	capsid	A0A0R6PHC6	Moraxella_phage	35.0	3.0e-58
WP_011516728.1|3182923_3183220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011516727.1|3183236_3183527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011516726.1|3183519_3183876_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011516725.1|3183982_3184462_-	hypothetical protein	NA	NA	NA	NA	NA
3184548:3184607	attL	TGTGCGTGAGCACGAGATTCGATGGATGCGCGAGCACGGTAATTGATGGTCGGCTGCGGC	NA	NA	NA	NA
WP_008651547.1|3184734_3185007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008651548.1|3185003_3185837_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_008651549.1|3185833_3187273_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_124682078.1|3187384_3187930_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_011516724.1|3188055_3188922_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011516723.1|3188924_3189227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011516722.1|3189234_3189627_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011516721.1|3189734_3190340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155877854.1|3190336_3191242_-|integrase	tyrosine-type recombinase/integrase	integrase	K7PHM9	Enterobacterial_phage	37.3	5.0e-17
WP_008651549.1|3191598_3193038_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_008651548.1|3193034_3193868_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_008651547.1|3193864_3194137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029310228.1|3194315_3195155_-	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_011516719.1|3195737_3196184_-	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA	NA
WP_152560283.1|3196700_3196988_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085959070.1|3197003_3198202_-|transposase	IS3-like element IS1087B family transposase	transposase	A0A1B0Z042	Pseudomonas_phage	61.9	6.5e-97
3194265:3197346	attR	GCCGCAGCCGACCATCAATTACCGTGCTCGCGCATCCATCGAATCTCGTGCTCACGCACAATTCAGGCTGACCAGCACGGCGGGGCGCAGGTAGTCGGTAAAGGCAGCATCGCGCAGGCTCGGCATGAGCGGGCGGCGGCGCACGTTGCGGTGGTCGTTCGCGCGGTCGCGGGCGTCGCGCATTTCGTCTTCCCGGGCGGCGAGTGCTATATATAGGCGCGCGCGCTCGTCCGGCGACAGGAAGCGCACCACCTCTTCGCTCGTGCCGTCATATTCGACACCCTTTACCGGGTTTTCCGAGACGTGACCGGCCAGCATGGCGACGCGGTAGAGCCCTTGCAGCGCGGTCAGCTTGCGCGCCGCCGTCGCCGCGACATTGCCTTTTTTCGCCTCGTCGTGCTTCCAGCGCTCCAGCGCCCACGGGGTCACATCGTCCAGGCGCTTGTCCAGCAGGCCGGCAAACGCCATGCGGATGAGGTCGGCCAAGTCGGCGCCGGTCTTGCGGTTGGTTATCAGCCAATCCGTATAGTCCCCGTCCAGAAAGGTGCGCAAGGTCGGCACCCCGGCAATGCGGTGGGCGTCGTCGCGCTTCTTTCGGCGCTCGGCCAGCACCGACAGGGCATCCCCCTTGCGGTCGGTCAACTCCAGTTGGTCTTTTGCCGCCTTACGCGCCTGCGTGGCGGTCATGGCGGGATAGGTGCCTATCTTCGTGCGCCCGAACTTGCCGTCAGGCTTGCGGTAACGCAGCGTGTATTGGATGGCGCCGGCAGGCGTGACACGCACGCCAAAGCCGCTCAGGGTCGAGTCGGCGTACTCTTGGTGCGCGCCGGTCGCACTCAGGCCGCGCAGGAAGTCGCGGTCGATATCTACCCGGTTTCGGGCCCTCTGCATGTCTATAGCTCCATTTGGGCAAACTTTGGGCAAACACGGCGAGCAACACCGGGCAACGCCCAACACCCACTATAGACATAAGTCCTTGATTCTTAAACACCAAACACCCGCCAGCACCAGCGGCCAACGGCAATTTTCGCGCTCATAACCCGAAGGTCGCAGGTTCAAGTCCTGCCCCCGCAACCAAATTTGAAAGCCCGCTCGGTTCATGCCGCGCGGGCTTTTTGTTTTTGTGTCTTTGGCGTGATTGTCAAAAGTCCAGAATTATTTCGGCACAGCGAGCTAGCATCGGCGTCAGCGTCCACACGAATGACAATTGGTGTATGGCGTGGTTGTCTTTCGTGTGGTTCGCTAGAGTGGGCGCGGCCACCAAAAAATGCCCGTATGACATGCACAAATTTGTGGACTCCATTCGGCACGACCCGCTGGGTGAGGGAATGCTGGTGTGTCGTCGCAAGCTGAGCGATGTTGCCAACGTAGTTCGTCGGCACCGGGGCGGCGCGAGCGACGTTGATCTGTCGGTGGCCTATGGCGTTGGCGCTGAAGGCACACCAGGCCGACCGGCGGAGGGGTTTGATGCTCTCAATCTGCAGACGGTGGCGACTTGAATCGAACCAGAAAGTAACCACCCGTTAGCGAGAGCACCACTGCGGCCACGCCCATTAGGGAACCGCCCGACATGTGCTCCACATCCAAATTAATCACATGGCGGCCGACGGCAATGATGGCCACGGCCAAGATGGTTTCCAGCCGAACGCGGTGCGATCTGAAATACACGCGCAGTGTTTCCATAAGCTCGAGCCCGAGAATGATGAGCAGTACGCCGGAAAAGGCTGTCTGTACCGACTTCATAAGCTCCGGAACGGTATCGATGCTGCTAACGCGCTCGAGAATATCGGACGAGAACATGATCCAAAGCTGAATGACCATCGCCAAGATTACCGCCATCAGCAGGATCTGAGCGGCCACAAGGATGGATTGTTCGAACCAGAATGTGATTTTGGCAGTGATCTTCTTTTCCACTTGCATAACCGGCGAGACTCCTCGTTAAGAACTTGTCCGCAAATAGTTGGTGCCGCCAAGCGCGTCCTGACCTAGCGTTTCTCGGCAGACCACGGCGACTAGAATGACTGCGTAGGTGGCATAGATTGTCGGTGTCATCTCATACCTTCCTTGCTGATGAGTCCGACCGTCTTCGCGAAAAATTCGACCGTCAGGCCGTCCCTGACGTGCCCGTAGAGAGCGGGTTTGGCACCGACTGCAAAGAGGTTGGCACTAAATATCAGACCGAGGAAGGCACACGCGCCGAGGGCAAGGAGGCGTCTCAGAACCATGAGTGACCCATGAGGCCTAGGCTGCTCGCCCTCTCACGCGCAAAGAATTCCCTTTTTTCAAATGGGAGTTCAAATGGCTGGAGTCAAAGGGCGCATTGGAGGGGCTTGTTCGGGGGCGAGCCGCAAGACGAAGGTCGCCAATGCTGAAGAGGCGCACTTTCCCATGGGCCTTGCGACGAGTAACAGGCCGGATGTCAGCGTCGAGGCCGCCCTAGCGGTCGGTGCTGCGGTTCTTGGCGCTAGACTTCATTTCGTTCTTGCGTTCGCGGAGGAGGGCCTCCGAGTTGGCGATGAACGCCCCACCTTCAGGCCGATACTCCAGGATCGCTTCGGCCTTGGATGTGCGCCACCGGTAATGGTGTTTCAGATCTGGATGGGGCTGGTTGGGTACACCGTATGCTTCGATTAGCGCCAGCCTTATCGCGTCGCCGTCGCGTTCGCTCGGGAACGTAATGATCAAGGAAGAGAACCGGTTCTTGGAGTTGACCCTGTAACTCAGGACACCCGAACACCGTTAAGTTGATGATGTTGCGGCGCGTCGGAACTCCCGAGGCGAACGATACTTCAACGCTTTATGCGGATGCCAGTCATTGTATTGCTCGAACGCGACCGTTAGCTGAGAGAGCGCGGTCGGCACGTCGGGCTTGTTCATGAACGCGATGTAATCGCGCTTCATGGTCTTGACGAAGGATTCGGCCATACCGTTGCTCTGCGGAGAACGCACCGGCGTGGTCAGTGGCTCCAGGCCCAGTTCCCGCGCGAAGCTGCGCGTACGATGGTCGATGTACGCCGAGCCGTTGTCCGAGAGCCATTCGATGGTTTGCTCGGTCTGCACGGCGCCAAAGCGCTGCTCGACG	NA	NA	NA	NA
>prophage 220
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3206746	3216580	3928086		Faecalibacterium_phage(25.0%)	12	NA	NA
WP_011516701.1|3206746_3207403_-	transcriptional repressor LexA	NA	A0A2K9V3G4	Faecalibacterium_phage	33.3	2.0e-15
WP_011516700.1|3207608_3208610_+	asparaginase	NA	NA	NA	NA	NA
WP_008650672.1|3208727_3209102_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_011516699.1|3209122_3209422_+	primosomal replication protein N	NA	NA	NA	NA	NA
WP_006163606.1|3209425_3209704_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_011516698.1|3209734_3210187_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_011516697.1|3210307_3211699_+	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.5	2.6e-137
WP_008650676.1|3211849_3212476_+	DUF47 domain-containing protein	NA	NA	NA	NA	NA
WP_008650677.1|3212489_3213500_+	inorganic phosphate transporter	NA	NA	NA	NA	NA
WP_011516696.1|3213560_3214199_-	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	39.3	3.4e-20
WP_011516695.1|3214247_3214724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011516694.1|3214885_3216580_-	AAA family ATPase	NA	A0A2I7SAD7	Vibrio_phage	36.4	2.3e-71
>prophage 221
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3224482	3230114	3928086		uncultured_Caudovirales_phage(50.0%)	3	NA	NA
WP_008645434.1|3224482_3224863_+	fluoride efflux transporter CrcB	NA	A0A2H4J148	uncultured_Caudovirales_phage	50.5	2.5e-26
WP_011516685.1|3225140_3227309_+	D-(-)-3-hydroxybutyrate oligomer hydrolase	NA	NA	NA	NA	NA
WP_011516684.1|3227525_3230114_+	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	33.1	2.9e-118
>prophage 222
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3241535	3245178	3928086		Burkholderia_virus(50.0%)	3	NA	NA
WP_011516677.1|3241535_3242825_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	37.8	5.8e-67
WP_011516675.1|3243079_3244429_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_006576352.1|3244455_3245178_-	two-component system response regulator OmpR	NA	W8CYM9	Bacillus_phage	35.8	1.4e-33
>prophage 223
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3256650	3258760	3928086		Planktothrix_phage(50.0%)	2	NA	NA
WP_011516666.1|3256650_3257664_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.3	7.9e-19
WP_011516665.1|3257680_3258760_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.8	5.1e-16
>prophage 224
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3272552	3274205	3928086		Enterococcus_phage(100.0%)	1	NA	NA
WP_011516654.1|3272552_3274205_+	FAD-binding protein	NA	A0A249XZT7	Enterococcus_phage	27.2	1.3e-18
>prophage 225
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3289790	3290528	3928086		Tupanvirus(100.0%)	1	NA	NA
WP_011516636.1|3289790_3290528_-	sterol desaturase family protein	NA	A0A2K9L1K6	Tupanvirus	48.3	7.9e-61
>prophage 226
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3293752	3295465	3928086		Ostreococcus_lucimarinus_virus(100.0%)	1	NA	NA
WP_011516630.1|3293752_3295465_+	pyruvate oxidase	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	22.4	9.2e-20
>prophage 227
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3310949	3315816	3928086	protease	Agrobacterium_phage(33.33%)	3	NA	NA
WP_008651661.1|3310949_3311600_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	54.1	4.1e-53
WP_011516610.1|3311880_3313158_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	57.0	1.0e-132
WP_011516609.1|3313404_3315816_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.6	2.0e-225
>prophage 228
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3319254	3319953	3928086		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_029307819.1|3319254_3319953_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	35.4	4.9e-20
>prophage 229
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3329511	3342912	3928086		Bacillus_phage(25.0%)	10	NA	NA
WP_011516598.1|3329511_3331272_-	cellulose biosynthesis regulator YedQ	NA	A0A127AWB9	Bacillus_phage	32.1	1.3e-16
WP_011516596.1|3331551_3332139_+	winged helix DNA-binding protein	NA	NA	NA	NA	NA
WP_011516594.1|3332366_3336413_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	74.4	4.5e-182
WP_011516593.1|3336541_3336889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008650253.1|3337078_3337873_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_011516592.1|3337877_3338192_-	BolA family transcriptional regulator	NA	NA	NA	NA	NA
WP_008650249.1|3338243_3338783_-	septation protein A	NA	NA	NA	NA	NA
WP_008650248.1|3338878_3339286_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_029310112.1|3339334_3340885_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	28.0	6.8e-38
WP_029307825.1|3341286_3342912_+	fatty-acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	21.9	1.4e-17
>prophage 230
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3346689	3348179	3928086		Organic_Lake_phycodnavirus(50.0%)	2	NA	NA
WP_011516586.1|3346689_3347469_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	25.1	7.4e-09
WP_011516585.1|3347465_3348179_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.4	1.4e-14
>prophage 231
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3363622	3364144	3928086		Scale_drop_disease_virus(100.0%)	1	NA	NA
WP_008650222.1|3363622_3364144_-	O-acetyl-ADP-ribose deacetylase	NA	A0A0K1L687	Scale_drop_disease_virus	43.9	6.4e-33
>prophage 232
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3370402	3383101	3928086		Escherichia_phage(42.86%)	15	NA	NA
WP_011516566.1|3370402_3371041_-	aldolase	NA	A0A077SK32	Escherichia_phage	49.5	5.8e-44
WP_011516565.1|3371037_3372306_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	48.8	1.2e-93
WP_011516564.1|3372328_3373225_-	NAD-binding protein	NA	A0A077SLF7	Escherichia_phage	56.1	2.9e-81
WP_011516563.1|3373284_3374028_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011516562.1|3374205_3374649_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011516561.1|3374672_3375527_-	hypothetical protein	NA	A0A0M3ZEJ9	Turkeypox_virus	32.0	4.1e-29
WP_011516560.1|3375605_3375896_-	DUF4936 family protein	NA	NA	NA	NA	NA
WP_011516559.1|3375915_3376926_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_011516558.1|3377112_3378111_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_011516557.1|3378115_3378718_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	37.8	3.3e-25
WP_011516556.1|3378804_3379818_+	DNA polymerase III subunit delta'	NA	A0A1U9WR94	Streptococcus_virus	30.8	6.5e-05
WP_011516555.1|3379923_3380334_+	type IV fimbrial biogenesis protein PilZ	NA	NA	NA	NA	NA
WP_011516554.1|3380499_3381297_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_017513406.1|3381289_3382006_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_011516552.1|3382063_3383101_-	J domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	41.3	4.6e-06
>prophage 233
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3417707	3418412	3928086		Planktothrix_phage(100.0%)	1	NA	NA
WP_011516521.1|3417707_3418412_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.4	1.9e-35
>prophage 234
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3434971	3436363	3928086		Pandoravirus(100.0%)	1	NA	NA
WP_011516507.1|3434971_3436363_-	FAD-binding oxidoreductase	NA	S4VRT3	Pandoravirus	27.9	5.3e-34
>prophage 235
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3447867	3453327	3928086		Moraxella_phage(50.0%)	4	NA	NA
WP_011516494.1|3447867_3449460_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	43.5	1.3e-36
WP_104670233.1|3449505_3450114_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011516492.1|3450445_3451354_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011516491.1|3451662_3453327_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	31.0	2.0e-59
>prophage 236
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3459767	3465227	3928086		Bacillus_phage(66.67%)	3	NA	NA
WP_011516483.1|3459767_3461177_-	heavy metal sensor histidine kinase	NA	W8CYF6	Bacillus_phage	27.9	1.9e-18
WP_011516482.1|3461176_3461851_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	37.0	1.2e-36
WP_011516481.1|3462029_3465227_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	22.0	1.3e-62
>prophage 237
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3477454	3479431	3928086		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_011516469.1|3477454_3479431_+	glycosyltransferase	NA	M1HVH2	Acanthocystis_turfacea_Chlorella_virus	27.9	3.1e-27
>prophage 238
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3501440	3503087	3928086		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011516451.1|3501440_3503087_-	fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	25.4	5.0e-23
>prophage 239
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3516350	3521615	3928086		Leptospira_phage(50.0%)	4	NA	NA
WP_011516435.1|3516350_3519542_-	multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	23.0	1.7e-59
WP_011516434.1|3519538_3520777_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_011516433.1|3520856_3521111_-	RNA-binding protein	NA	NA	NA	NA	NA
WP_011516432.1|3521240_3521615_-	response regulator	NA	A0A1J0GWE0	Alteromonas_phage	34.9	4.1e-05
>prophage 240
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3532909	3534385	3928086		Bacillus_virus(100.0%)	1	NA	NA
WP_152560158.1|3532909_3534385_-	diguanylate cyclase	NA	G3MA91	Bacillus_virus	36.6	1.1e-24
>prophage 241
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3538142	3544850	3928086		Staphylococcus_phage(50.0%)	4	NA	NA
WP_011516413.1|3538142_3540902_+	ribosome-associated ATPase/putative transporter RbbA	NA	A0A2H4PQG7	Staphylococcus_phage	28.4	3.3e-19
WP_029309709.1|3540970_3542095_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011516411.1|3542181_3543417_-	MFS transporter	NA	NA	NA	NA	NA
WP_011516410.1|3543707_3544850_+	3-deoxy-7-phosphoheptulonate synthase	NA	A0A0B5IW14	Pandoravirus	47.2	1.3e-81
>prophage 242
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3557047	3557718	3928086	transposase	Escherichia_phage(100.0%)	1	NA	NA
WP_155877858.1|3557047_3557718_-|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	44.2	5.0e-38
>prophage 243
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3567091	3567761	3928086	transposase	Escherichia_phage(100.0%)	1	NA	NA
WP_155877859.1|3567091_3567761_+|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	44.2	6.5e-38
>prophage 244
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3574507	3575206	3928086		Bacillus_phage(100.0%)	1	NA	NA
WP_011516380.1|3574507_3575206_+	two-component system response regulator CreB	NA	W8CYM9	Bacillus_phage	34.2	1.2e-29
>prophage 245
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3582289	3584659	3928086		Yellowstone_lake_phycodnavirus(100.0%)	1	NA	NA
WP_011516373.1|3582289_3584659_+	DNA polymerase II	NA	A0A0P0YM26	Yellowstone_lake_phycodnavirus	24.6	1.0e-29
>prophage 246
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3606904	3608341	3928086		Bacillus_phage(100.0%)	1	NA	NA
WP_011516355.1|3606904_3608341_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	25.3	5.5e-18
>prophage 247
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3613209	3627264	3928086	transposase	Tupanvirus(16.67%)	10	NA	NA
WP_011516350.1|3613209_3614283_-	histone deacetylase family protein	NA	A0A2K9L0J7	Tupanvirus	32.0	3.5e-41
WP_011516349.1|3614330_3616034_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.6	1.2e-35
WP_011516348.1|3616030_3616330_-	cupin	NA	NA	NA	NA	NA
WP_011516347.1|3616352_3617615_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.5	2.0e-27
WP_011516346.1|3617657_3619301_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	1.4e-20
WP_011516345.1|3619312_3620152_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_024569757.1|3620148_3621153_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_085960481.1|3622134_3623320_+|transposase	IS3-like element ISRme13 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	39.7	3.2e-56
WP_011516342.1|3624212_3625556_-	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_029307968.1|3625668_3627264_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	23.6	7.5e-16
>prophage 248
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3640162	3646477	3928086	transposase	Mycobacterium_phage(50.0%)	4	NA	NA
WP_011516326.1|3640162_3643534_-	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	49.9	4.7e-84
WP_011516325.1|3643693_3644278_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_008649650.1|3644291_3644705_-	DoxX family protein	NA	NA	NA	NA	NA
WP_011516271.1|3645448_3646477_+|transposase	IS30-like element IS1088 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.6	3.0e-42
>prophage 249
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3666531	3670323	3928086	tRNA	Tupanvirus(33.33%)	4	NA	NA
WP_011516310.1|3666531_3668154_-	ABC-F family ATPase	NA	A0A2K9L3Z8	Tupanvirus	26.4	6.0e-53
WP_011516309.1|3668338_3669259_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_011516308.1|3669255_3669825_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	35.9	5.8e-11
WP_008649701.1|3669846_3670323_-	6-carboxytetrahydropterin synthase	NA	A0A1U9WRB3	Streptococcus_virus	30.6	9.7e-12
>prophage 250
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3694636	3751460	3928086	protease,transposase	Staphylococcus_phage(33.33%)	49	NA	NA
WP_003049965.1|3694636_3697552_-|transposase	Tn3-like element IS1071 family transposase	transposase	NA	NA	NA	NA
WP_049799711.1|3697727_3698111_+	Dabb family protein	NA	NA	NA	NA	NA
WP_011516282.1|3698100_3699030_-	response regulator	NA	NA	NA	NA	NA
WP_011516281.1|3699026_3700766_-	hydrogenase maturation protein	NA	NA	NA	NA	NA
WP_011516280.1|3700864_3701914_-	hydrogenase expression/formation protein HypE	NA	NA	NA	NA	NA
WP_011516279.1|3701987_3703130_-	hydrogenase formation protein HypD	NA	NA	NA	NA	NA
WP_041240127.1|3703126_3703363_-	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
WP_011516277.1|3703367_3705725_-	carbamoyltransferase HypF	NA	NA	NA	NA	NA
WP_011516276.1|3705738_3706719_-	hydrogenase nickel incorporation protein HypB	NA	NA	NA	NA	NA
WP_011516275.1|3706752_3707094_-	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA	NA
WP_146209070.1|3707086_3707455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041240122.1|3707445_3707745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011516273.1|3707844_3708681_-	nickel transporter	NA	NA	NA	NA	NA
WP_011516272.1|3708742_3710116_-	NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta	NA	NA	NA	NA	NA
WP_041240119.1|3710112_3710418_-	NAD(P) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_011516271.1|3710879_3711908_+|transposase	IS30-like element IS1088 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.6	3.0e-42
WP_082219896.1|3712865_3712997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011516270.1|3713006_3713510_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA	NA
WP_110070725.1|3713522_3714002_-|protease	hydrogenase maturation protease	protease	NA	NA	NA	NA
WP_011516268.1|3714012_3715479_-	Ni/Fe hydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_041240501.1|3715496_3716072_-	NADP oxidoreductase	NA	NA	NA	NA	NA
WP_011516266.1|3716122_3716833_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_011516265.1|3716829_3718638_-	NADP oxidoreductase	NA	NA	NA	NA	NA
WP_011516264.1|3718763_3719423_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA	NA
WP_011516263.1|3719422_3720241_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_011516262.1|3720276_3721695_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_011516261.1|3721709_3722747_-	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
WP_011516260.1|3722806_3723625_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_011516259.1|3723621_3724812_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_011516258.1|3724808_3725816_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_011516257.1|3725812_3726544_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_011516256.1|3726545_3728600_-	transketolase	NA	NA	NA	NA	NA
WP_011516255.1|3728599_3729484_-	phosphoribulokinase	NA	NA	NA	NA	NA
WP_011516254.1|3729516_3730614_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	34.5	6.7e-48
WP_155877856.1|3730640_3730784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011516253.1|3730793_3731492_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_155877857.1|3731509_3731674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011516252.1|3731779_3732703_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003049965.1|3734148_3737064_+|transposase	Tn3-like element IS1071 family transposase	transposase	NA	NA	NA	NA
WP_011515352.1|3738352_3739603_-|transposase	IS256-like element IS1090 family transposase	transposase	A0A218MNI5	uncultured_virus	42.8	4.0e-41
WP_011516248.1|3739781_3740663_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011516247.1|3740787_3742209_+	form I ribulose bisphosphate carboxylase large subunit	NA	NA	NA	NA	NA
WP_011516246.1|3742286_3742643_+	ribulose bisphosphate carboxylase small subunit	NA	NA	NA	NA	NA
WP_011516245.1|3742792_3743596_+	CbbQ/NirQ/NorQ/GpvN family protein	NA	NA	NA	NA	NA
WP_011516244.1|3743608_3745966_+	nitric oxide reductase activation protein NorD	NA	NA	NA	NA	NA
WP_011516243.1|3745974_3746271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011516242.1|3746286_3746661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011516241.1|3747571_3748432_+	class II fructose-bisphosphate aldolase family protein	NA	NA	NA	NA	NA
WP_003049965.1|3748544_3751460_-|transposase	Tn3-like element IS1071 family transposase	transposase	NA	NA	NA	NA
>prophage 251
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3756074	3756713	3928086		Halomonas_phage(100.0%)	1	NA	NA
WP_011516235.1|3756074_3756713_-	AAA family ATPase	NA	B0ZSI1	Halomonas_phage	39.6	5.6e-31
>prophage 252
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3762969	3769319	3928086		Emiliania_huxleyi_virus(20.0%)	6	NA	NA
WP_011516227.1|3762969_3765012_-	ParB/RepB/Spo0J family partition protein	NA	G8DH78	Emiliania_huxleyi_virus	27.0	4.0e-22
WP_011516226.1|3765076_3765907_-	DUF945 domain-containing protein	NA	A0A2C9CYF8	Yersinia_phage	37.7	8.9e-45
WP_011516224.1|3766652_3767003_-	DUF2958 domain-containing protein	NA	A0A1W6DX76	Sphingobium_phage	60.4	3.8e-29
WP_011516223.1|3767784_3768024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011516222.1|3768076_3768382_+	helix-turn-helix transcriptional regulator	NA	A0A1W6JPB6	Staphylococcus_phage	40.3	7.4e-05
WP_011516221.1|3768347_3769319_+	RNA-directed DNA polymerase	NA	A0A0F7LDS3	Escherichia_phage	29.4	4.3e-22
>prophage 253
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3774799	3791853	3928086	integrase	Hokovirus(28.57%)	18	3773278:3773292	3789159:3789173
3773278:3773292	attL	GTTCCAGACCTTCAT	NA	NA	NA	NA
WP_011516215.1|3774799_3775324_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	36.0	4.1e-11
WP_011516214.1|3775328_3775604_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011516213.1|3775804_3777061_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1X9TCT6	Enterobacter_phage	52.8	5.0e-116
WP_011516212.1|3777362_3778982_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	30.6	4.5e-16
WP_011516211.1|3778956_3779598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011516210.1|3779685_3781149_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.0	1.7e-94
WP_011516209.1|3781274_3782234_+	DMT family transporter	NA	NA	NA	NA	NA
WP_011516208.1|3782328_3782868_+	DUF4124 domain-containing protein	NA	NA	NA	NA	NA
WP_011516207.1|3783033_3783399_-	RnfH family protein	NA	NA	NA	NA	NA
WP_011516206.1|3783373_3783823_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_008652065.1|3783999_3784452_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	4.6e-27
WP_011516204.1|3784537_3785476_-	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA	NA
WP_011516203.1|3785525_3785960_-	NfeD family protein	NA	NA	NA	NA	NA
WP_011516202.1|3786140_3788525_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	36.0	2.5e-164
WP_011516201.1|3788898_3789711_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
3789159:3789173	attR	GTTCCAGACCTTCAT	NA	NA	NA	NA
WP_152560300.1|3789915_3790341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011516199.1|3790374_3791163_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_011516198.1|3791172_3791853_-	ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	38.8	7.1e-24
>prophage 254
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3802038	3802809	3928086		Flavobacterium_phage(100.0%)	1	NA	NA
WP_011516189.1|3802038_3802809_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	37.6	7.5e-22
>prophage 255
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3814598	3817321	3928086		Synechococcus_phage(50.0%)	2	NA	NA
WP_011516180.1|3814598_3815132_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.0	5.4e-11
WP_011516179.1|3815155_3817321_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	42.9	1.7e-140
>prophage 256
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3841783	3847786	3928086		Bacillus_virus(50.0%)	4	NA	NA
WP_011516163.1|3841783_3843676_-	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.4	7.3e-18
WP_011516162.1|3843677_3844646_-	isoaspartyl peptidase/L-asparaginase	NA	NA	NA	NA	NA
WP_029310235.1|3844671_3845574_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011516160.1|3845863_3847786_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	29.0	3.0e-59
>prophage 257
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3858703	3858973	3928086		Catovirus(100.0%)	1	NA	NA
WP_008649110.1|3858703_3858973_+	acyl-CoA-binding protein	NA	A0A1V0S9E7	Catovirus	37.5	8.5e-05
>prophage 258
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3874466	3875570	3928086		Bacillus_virus(100.0%)	1	NA	NA
WP_011516139.1|3874466_3875570_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	5.5e-26
>prophage 259
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3879113	3879989	3928086		Bacillus_virus(100.0%)	1	NA	NA
WP_011516134.1|3879113_3879989_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	35.6	4.7e-28
>prophage 260
NZ_CP046331	Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome	3928086	3917337	3918084	3928086		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_011516098.1|3917337_3918084_-	acetoacetyl-CoA reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.6	6.0e-16
>prophage 1
NZ_CP046330	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed1, complete sequence	171459	28407	68135	171459	integrase,transposase	Acidithiobacillus_phage(25.0%)	31	53898:53919	66761:66782
WP_011239934.1|28407_29553_+|integrase	tyrosine-type recombinase/integrase	integrase	A8ATJ6	Listeria_phage	27.1	9.5e-05
WP_011514892.1|29527_31186_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_029309944.1|31182_33096_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_011514894.1|33092_33593_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029309942.1|33894_35337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011514896.1|35336_39761_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_011514897.1|40429_41959_+	RHS repeat protein	NA	NA	NA	NA	NA
WP_011239931.1|41963_42719_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	62.7	4.0e-84
WP_011239930.1|42726_44280_-|transposase	IS21-like element ISRme9 family transposase	transposase	K4I413	Acidithiobacillus_phage	54.6	8.3e-161
WP_124682111.1|44292_44514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080709891.1|44529_45909_+	RHS repeat protein	NA	NA	NA	NA	NA
WP_011514931.1|45918_46134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029309940.1|46247_46913_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011514900.1|47253_50073_+	RHS repeat protein	NA	NA	NA	NA	NA
WP_011514935.1|50085_50301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029309938.1|50776_51727_+	phage Gp37/Gp68 family protein	NA	Q8W6R4	Burkholderia_virus	54.9	2.0e-88
WP_011514902.1|52011_52257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008648655.1|52351_52942_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011239925.1|52995_53886_+	DNA/RNA non-specific endonuclease	NA	H6X497	Enterobacteria_phage	35.6	6.9e-19
53898:53919	attL	AAGGAACATGTTCCTTTCAAAA	NA	NA	NA	NA
WP_029306690.1|53976_54894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011514905.1|55663_56410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011239922.1|56802_57939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011239921.1|58552_59707_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_011239920.1|60835_61861_+	PRTRC system protein D	NA	NA	NA	NA	NA
WP_008649401.1|62559_62772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011514906.1|62868_63936_-	zinc-binding protein	NA	A0A0H5AWB1	Pseudomonas_phage	28.9	2.8e-19
WP_011239918.1|64201_64774_-	single-stranded DNA-binding protein	NA	C5IHK5	Burkholderia_virus	70.6	2.4e-49
WP_035821539.1|64785_65484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008649407.1|65575_66007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011514908.1|66105_66414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011239917.1|67115_68135_-|transposase	IS30-like element IS1086 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.4	4.9e-45
66761:66782	attR	TTTTGAAAGGAACATGTTCCTT	NA	NA	NA	NA
>prophage 2
NZ_CP046330	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed1, complete sequence	171459	107289	165602	171459	integrase,transposase	Salmonella_phage(22.22%)	55	141099:141115	156364:156380
WP_008649488.1|107289_108486_-|integrase	site-specific integrase	integrase	A0A160DFH7	Gordonia_phage	27.2	1.0e-04
WP_011239987.1|108711_109542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029306646.1|110080_110284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029306645.1|110427_110991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029306644.1|110971_111196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011514918.1|111287_112097_+	TIGR02391 family protein	NA	A0A1S5SBU1	Streptococcus_phage	33.5	1.5e-25
WP_011514919.1|112145_113585_+	DUF4263 domain-containing protein	NA	NA	NA	NA	NA
WP_152560224.1|113649_117444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011514921.1|117649_118918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011514922.1|118992_119265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029306746.1|120397_120883_+	hypothetical protein	NA	NA	NA	NA	NA
WP_150982636.1|121004_122036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011514926.1|122093_122444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124682078.1|123504_124050_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_008651549.1|124161_125601_+|transposase	IS481 family transposase	transposase	O12274	Simian_T-lymphotropic_virus	37.8	4.1e-05
WP_008651548.1|125597_126431_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_008651547.1|126427_126700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012435589.1|129727_130084_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_011514928.1|130217_130778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011342942.1|131184_131469_-	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA	NA
WP_011342941.1|131465_131744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003131969.1|132344_132779_-	mercury resistance transcriptional regulator MerR	NA	NA	NA	NA	NA
WP_006224622.1|132850_133201_+	mercuric ion transporter MerT	NA	NA	NA	NA	NA
WP_003131987.1|133213_133489_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
WP_003158917.1|133560_135246_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.3	2.1e-40
WP_000995360.1|135263_135629_+	mercury resistance co-regulator MerD	NA	NA	NA	NA	NA
WP_003132004.1|135625_135862_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA	NA
WP_003132006.1|135858_136848_+	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
WP_011239984.1|136977_137538_+	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	89.4	1.5e-51
WP_011239983.1|137540_140510_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	72.9	0.0e+00
WP_011514870.1|140566_141001_+	hypothetical protein	NA	NA	NA	NA	NA
141099:141115	attL	GCGCCGCCGCCACACTG	NA	NA	NA	NA
WP_150982641.1|141283_142099_+	hypothetical protein	NA	A0A1V0SKX7	Klosneuvirus	31.4	2.6e-20
WP_011239982.1|142182_142605_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_011514872.1|142969_143923_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_011239980.1|143919_145407_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_011514873.1|145594_146641_-	YncE family protein	NA	NA	NA	NA	NA
WP_011514874.1|146657_147584_-	DUF1259 domain-containing protein	NA	NA	NA	NA	NA
WP_011239977.1|147641_148883_-	MFS transporter	NA	NA	NA	NA	NA
WP_011514875.1|148905_149214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_128646515.1|149233_149554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011239976.1|149651_150074_-	chromate resistance protein	NA	NA	NA	NA	NA
WP_011239975.1|150070_150412_-	rhodanese family chromate resistance protein ChrE	NA	NA	NA	NA	NA
WP_011239974.1|150429_151023_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_011514877.1|151042_152248_-	chromate transporter	NA	NA	NA	NA	NA
WP_011514878.1|152290_153265_-	protein ChrB	NA	NA	NA	NA	NA
WP_029310258.1|153545_153914_+	regulatory protein ChrI	NA	NA	NA	NA	NA
WP_128646513.1|154022_154154_-	YHYH domain-containing protein	NA	NA	NA	NA	NA
WP_011239971.1|154428_154716_+	cobalt/nickel resistance anti-sigma factor CnrY	NA	NA	NA	NA	NA
WP_011239970.1|154712_155159_+	periplasmic nickel sensor CnrX	NA	NA	NA	NA	NA
WP_011239969.1|155155_155731_+	nickel resistance ECF sigma factor CnrH	NA	NA	NA	NA	NA
WP_011239968.1|155803_157060_+	nickel efflux RND transporter outer membrane subunit CnrC	NA	NA	NA	NA	NA
156364:156380	attR	CAGTGTGGCGGCGGCGC	NA	NA	NA	NA
WP_011239967.1|157056_158244_+	nickel efflux RND transporter periplasmic adaptor subunit CnrB	NA	NA	NA	NA	NA
WP_011239966.1|158240_161471_+	nickel efflux RND transporter permease subunit CnrA	NA	S5VTK5	Leptospira_phage	21.6	8.3e-54
WP_011239965.1|161516_162572_+	nickel diffusion facilitator CnrT	NA	NA	NA	NA	NA
WP_011239964.1|162662_165602_-|transposase	Tn3 family transposase	transposase	A0A125RQ78	Bacillus_phage	20.7	1.1e-33
>prophage 1
NZ_CP046332	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed2	255356	63223	101458	255356	transposase	Streptococcus_phage(28.57%)	24	NA	NA
WP_001138070.1|63223_66190_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	72.9	0.0e+00
WP_124682078.1|67137_67683_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_008651549.1|67794_69234_+|transposase	IS481 family transposase	transposase	O12274	Simian_T-lymphotropic_virus	37.8	4.1e-05
WP_008651548.1|69230_70064_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_008651547.1|70060_70333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008645747.1|71600_73529_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_008645748.1|73650_74088_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_011229367.1|74174_76574_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	48.1	6.2e-147
WP_011229366.1|76570_77647_+	signal peptidase II	NA	NA	NA	NA	NA
WP_017514740.1|77721_77922_-	hypothetical protein	NA	NA	NA	NA	NA
WP_104670213.1|78374_78680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011229361.1|82527_82791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011229360.1|82875_83886_+|transposase	IS30-like element ISRme10 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.3	1.2e-40
WP_080672772.1|85656_85872_-	hypothetical protein	NA	NA	NA	NA	NA
WP_133428599.1|85847_86240_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_080709916.1|88511_89036_+	cytochrome c	NA	NA	NA	NA	NA
WP_008650714.1|91198_91444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008650720.1|92878_94486_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_008650722.1|94482_94866_+	GtrA family protein	NA	NA	NA	NA	NA
WP_008650723.1|94862_95984_+	glycosyltransferase family 2 protein	NA	U5P087	Shigella_phage	48.3	3.3e-74
WP_008650724.1|96216_96519_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_011514822.1|96576_99066_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	39.0	3.9e-112
WP_008650726.1|99565_99988_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_085960481.1|100272_101458_+|transposase	IS3-like element ISRme13 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	39.7	3.2e-56
>prophage 1
NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	2586495	1384930	1424682	2586495	integrase,transposase	Shigella_phage(50.0%)	32	1418404:1418418	1427436:1427450
WP_085960507.1|1384930_1386072_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	60.6	3.6e-89
WP_082219905.1|1386109_1386907_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_152560236.1|1387058_1388069_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_011519898.1|1388143_1388491_-	NIPSNAP family protein	NA	NA	NA	NA	NA
WP_011519897.1|1388487_1390191_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011519896.1|1390205_1391171_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_011519894.1|1391539_1392718_+	4-hydroxybenzoate 3-monooxygenase	NA	NA	NA	NA	NA
WP_080710363.1|1393775_1394066_-	4-hydroxybenzoate transporter	NA	NA	NA	NA	NA
WP_011519889.1|1394813_1396610_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_011519888.1|1396602_1398378_+	ATP-dependent helicase	NA	A7KV33	Bacillus_phage	22.3	3.5e-30
WP_029309992.1|1400089_1400428_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152560237.1|1400583_1401462_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	E5G6L8	Salmonella_phage	39.6	3.5e-47
WP_124682078.1|1402141_1402687_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_008651549.1|1402798_1404238_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_008651548.1|1404234_1405068_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_008651547.1|1405064_1405337_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011519879.1|1407464_1408448_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_011519878.1|1408458_1409628_+	mandelate racemase	NA	NA	NA	NA	NA
WP_011519877.1|1409633_1410476_+	fumarate hydratase	NA	NA	NA	NA	NA
WP_011519876.1|1410489_1411053_+	hydrolyase	NA	NA	NA	NA	NA
WP_011519875.1|1411165_1411894_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011519873.1|1412983_1413673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152560197.1|1414281_1415373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152560198.1|1415475_1415784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011519869.1|1415923_1416415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152560199.1|1417414_1417762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152560200.1|1417997_1418468_-	hypothetical protein	NA	NA	NA	NA	NA
1418404:1418418	attL	GGCATTCCATCAACG	NA	NA	NA	NA
WP_049799813.1|1418693_1419251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152560201.1|1419650_1420553_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011519860.1|1420552_1422730_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_029309851.1|1422713_1423517_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_085960507.1|1423541_1424682_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	60.6	3.6e-89
1427436:1427450	attR	CGTTGATGGAATGCC	NA	NA	NA	NA
