assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009730275.1_ASM973027v1	NZ_CP046311	Lactobacillus crispatus strain FDAARGOS_743 chromosome, complete genome	1	609194-609258	1	CRISPRCasFinder	no		cas14j,c2c9_V-U4,DEDDh,csa3,cas2,cas3,RT,csn2,cas1,cas9,cas14k	Orphan	TTTACTTTATAAAGGAAATAATATG	25	0	0	NA	NA	NA	1	1	Orphan	cas14j,c2c9_V-U4,DEDDh,csa3,cas2,cas3,RT,csn2,cas1,cas9,cas14k	NA|111aa|up_5|NZ_CP046311.1_604096_604429_+,NA|138aa|down_6|NZ_CP046311.1_618602_619016_-	NA|243aa|up_9|NZ_CP046311.1_600479_601208_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|437aa|up_8|NZ_CP046311.1_601388_602699_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|286aa|up_7|NZ_CP046311.1_602758_603616_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|89aa|up_6|NZ_CP046311.1_603840_604107_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|111aa|up_5|NZ_CP046311.1_604096_604429_+	NA	NA|286aa|up_4|NZ_CP046311.1_604905_605763_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|148aa|up_3|NZ_CP046311.1_607382_607826_+	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|65aa|up_2|NZ_CP046311.1_607788_607983_+	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|199aa|up_1|NZ_CP046311.1_608189_608786_+	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|126aa|up_0|NZ_CP046311.1_608789_609167_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|258aa|down_0|NZ_CP046311.1_610546_611320_-	cd07517, HAD_HPP, phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate phosphatase; belongs to the haloacid dehalogenase-like superfamily	NA|437aa|down_1|NZ_CP046311.1_611473_612784_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|393aa|down_2|NZ_CP046311.1_613025_614204_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|243aa|down_3|NZ_CP046311.1_614272_615001_+	pfam13349, DUF4097, Putative adhesin	NA|523aa|down_4|NZ_CP046311.1_615184_616753_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|270aa|down_5|NZ_CP046311.1_616854_617664_-	pfam01381, HTH_3, Helix-turn-helix	NA|138aa|down_6|NZ_CP046311.1_618602_619016_-	NA	NA|282aa|down_7|NZ_CP046311.1_619163_620009_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|126aa|down_8|NZ_CP046311.1_620197_620575_+	pfam13473, Cupredoxin_1, Cupredoxin-like domain	NA|96aa|down_9|NZ_CP046311.1_620587_620875_+	pfam13473, Cupredoxin_1, Cupredoxin-like domain
GCF_009730275.1_ASM973027v1	NZ_CP046311	Lactobacillus crispatus strain FDAARGOS_743 chromosome, complete genome	2	1787858-1788344	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas14j,c2c9_V-U4,DEDDh,csa3,cas2,cas3,RT,csn2,cas1,cas9,cas14k	Type II-C,Type II-A,Type II-B	GATCTAAACCTCATTGATCTAACAATCATCTAAAAC,GATCTAAACCTCATTGATCTAACAA,GATCTAAACCTCATTGATCTAACAATCATCTAAAAC	36,25,36	1	1	1787894-1787923	NZ_CP046311.1_1635581-1635610	NA:NA:NA	6,7,6	7	TypeII-C,TypeII-A,TypeII-B	cas14j,c2c9_V-U4,DEDDh,csa3,cas2,cas3,RT,csn2,cas1,cas9,cas14k	NA,NA	NA|607aa|up_9|NZ_CP046311.1_1777291_1779112_-	PRK05667, dnaG, DNA primase; Validated	NA|688aa|up_8|NZ_CP046311.1_1779141_1781205_-	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	NA|306aa|up_7|NZ_CP046311.1_1781197_1782115_-	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	NA|252aa|up_6|NZ_CP046311.1_1782374_1783130_-	TIGR00613, DNA_repair_protein_RecO, DNA repair protein RecO	NA|301aa|up_5|NZ_CP046311.1_1783499_1784402_-	PRK00089, era, GTPase Era; Reviewed	NA|175aa|up_4|NZ_CP046311.1_1784401_1784926_-	pfam02130, UPF0054, Uncharacterized protein family UPF0054	NA|320aa|up_3|NZ_CP046311.1_1784928_1785888_-	pfam02562, PhoH, PhoH-like protein	NA|148aa|up_2|NZ_CP046311.1_1785913_1786357_-	pfam09424, YqeY, Yqey-like protein	NA|59aa|up_1|NZ_CP046311.1_1786517_1786694_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|279aa|up_0|NZ_CP046311.1_1786921_1787758_+	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase	csn2|83aa|down_0|NZ_CP046311.1_1788376_1788625_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|393aa|down_1|NZ_CP046311.1_1788687_1789866_-	pfam00872, Transposase_mut, Transposase, Mutator family	csn2|145aa|down_2|NZ_CP046311.1_1789987_1790422_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_3|NZ_CP046311.1_1790418_1790724_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|303aa|down_4|NZ_CP046311.1_1790701_1791610_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|348aa|down_5|NZ_CP046311.1_1791813_1792857_-	pfam16595, Cas9_PI, PAM-interacting domain of CRISPR-associated endonuclease Cas9	NA|564aa|down_6|NZ_CP046311.1_1793569_1795261_+	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas9|858aa|down_7|NZ_CP046311.1_1795198_1797772_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|393aa|down_8|NZ_CP046311.1_1797930_1799109_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|208aa|down_9|NZ_CP046311.1_1799451_1800075_+	pfam01551, Peptidase_M23, Peptidase family M23
GCF_009730275.1_ASM973027v1	NZ_CP046311	Lactobacillus crispatus strain FDAARGOS_743 chromosome, complete genome	3	1801575-1801842	3	CRISPRCasFinder	no	csn2,cas2,cas1,cas9	cas14j,c2c9_V-U4,DEDDh,csa3,cas2,cas3,RT,csn2,cas1,cas9,cas14k	Type II-C,Type II-A,Type II-B	CCTCCACATGTGTGGAGAATACT	23	0	0	NA	NA	NA	4	4	TypeII-C,TypeII-A,TypeII-B	cas14j,c2c9_V-U4,DEDDh,csa3,cas2,cas3,RT,csn2,cas1,cas9,cas14k	NA,NA|216aa|down_1|NZ_CP046311.1_1803108_1803756_+	NA|393aa|up_9|NZ_CP046311.1_1788687_1789866_-	pfam00872, Transposase_mut, Transposase, Mutator family	csn2|145aa|up_8|NZ_CP046311.1_1789987_1790422_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|up_7|NZ_CP046311.1_1790418_1790724_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|303aa|up_6|NZ_CP046311.1_1790701_1791610_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|348aa|up_5|NZ_CP046311.1_1791813_1792857_-	pfam16595, Cas9_PI, PAM-interacting domain of CRISPR-associated endonuclease Cas9	NA|564aa|up_4|NZ_CP046311.1_1793569_1795261_+	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas9|858aa|up_3|NZ_CP046311.1_1795198_1797772_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|393aa|up_2|NZ_CP046311.1_1797930_1799109_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|208aa|up_1|NZ_CP046311.1_1799451_1800075_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|189aa|up_0|NZ_CP046311.1_1800145_1800712_-	pfam01625, PMSR, Peptide methionine sulfoxide reductase	NA|293aa|down_0|NZ_CP046311.1_1802059_1802938_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|216aa|down_1|NZ_CP046311.1_1803108_1803756_+	NA	NA|288aa|down_2|NZ_CP046311.1_1803781_1804645_-	PRK01212, PRK01212, homoserine kinase; Provisional	NA|412aa|down_3|NZ_CP046311.1_1804658_1805894_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|497aa|down_4|NZ_CP046311.1_1806005_1807496_+	PRK09225, PRK09225, threonine synthase; Validated	NA|456aa|down_5|NZ_CP046311.1_1807515_1808883_+	PRK09034, PRK09034, aspartate kinase; Reviewed	NA|286aa|down_6|NZ_CP046311.1_1809425_1810283_+	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|393aa|down_7|NZ_CP046311.1_1810660_1811839_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|772aa|down_8|NZ_CP046311.1_1812054_1814370_+	cd09117, PLDc_Bfil_DEXD_like, Catalytic domain of type II restriction endonucleases BfiI and NgoFVII, and uncharacterized proteins with a DEAD domain	NA|124aa|down_9|NZ_CP046311.1_1814427_1814799_-	pfam12680, SnoaL_2, SnoaL-like domain
