assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009730215.1_ASM973021v1	NZ_CP046308	Mycobacterium tuberculosis strain FDAARGOS_751 chromosome, complete genome	1	753206-753460	1	CRT	no		DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	753287-753304|753287-753304|753377-753394	NZ_CP046308.1_3492852-3492835|NZ_CP046308.1_3699698-3699681|NZ_CP046308.1_2125980-2125963	NA	5	5	Orphan	DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	NA|88aa|up_0|NZ_CP046308.1_752565_752829_-,NA	NA|165aa|up_9|NZ_CP046308.1_738915_739410_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP046308.1_739757_740435_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP046308.1_740793_743619_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP046308.1_743845_744706_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP046308.1_744746_745613_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP046308.1_745617_747504_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP046308.1_747519_749553_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP046308.1_749672_751898_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP046308.1_752173_752569_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP046308.1_752565_752829_-	NA	NA|350aa|down_0|NZ_CP046308.1_754597_755647_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP046308.1_755646_757014_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP046308.1_757187_758624_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP046308.1_758659_760111_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP046308.1_760140_761091_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP046308.1_761105_761522_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP046308.1_761799_762222_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_7|NZ_CP046308.1_762270_762573_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP046308.1_762569_762884_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP046308.1_762883_764617_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_009730215.1_ASM973021v1	NZ_CP046308	Mycobacterium tuberculosis strain FDAARGOS_751 chromosome, complete genome	2	835014-835233	1	CRISPRCasFinder	no		DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	NA|157aa|up_9|NZ_CP046308.1_817433_817904_-,NA|136aa|up_2|NZ_CP046308.1_824928_825336_-,NA|127aa|down_5|NZ_CP046308.1_842749_843130_-	NA|157aa|up_9|NZ_CP046308.1_817433_817904_-	NA	NA|216aa|up_8|NZ_CP046308.1_818243_818891_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_7|NZ_CP046308.1_818897_821120_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_6|NZ_CP046308.1_821157_821601_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_5|NZ_CP046308.1_821714_822308_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_4|NZ_CP046308.1_822390_822996_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|251aa|up_3|NZ_CP046308.1_824198_824951_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP046308.1_824928_825336_-	NA	NA|767aa|up_1|NZ_CP046308.1_825470_827771_+	PLN02892, PLN02892, isocitrate lyase	NA|1857aa|up_0|NZ_CP046308.1_827940_833511_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP046308.1_837260_837725_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP046308.1_837822_838686_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP046308.1_838723_839995_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP046308.1_840266_841382_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP046308.1_841372_842713_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP046308.1_842749_843130_-	NA	NA|621aa|down_6|NZ_CP046308.1_843286_845149_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP046308.1_845156_845636_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP046308.1_845872_846646_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP046308.1_846649_847417_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_009730215.1_ASM973021v1	NZ_CP046308	Mycobacterium tuberculosis strain FDAARGOS_751 chromosome, complete genome	3	1792733-1794324	1,2,2	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	Type III-D,Type III-B,Type III-C,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,NNNNNNNNGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,44	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	21,21,21	21	TypeIII-D,TypeIII-B,TypeIII-C,TypeIII-A	DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	NA|85aa|up_8|NZ_CP046308.1_1786012_1786267_-,NA|135aa|up_7|NZ_CP046308.1_1786414_1786819_+,NA|64aa|up_6|NZ_CP046308.1_1786815_1787007_+,NA|86aa|up_4|NZ_CP046308.1_1788593_1788851_+,NA|104aa|up_3|NZ_CP046308.1_1788955_1789267_+,NA|203aa|up_2|NZ_CP046308.1_1789686_1790295_+,NA	NA|92aa|up_9|NZ_CP046308.1_1785561_1785837_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP046308.1_1786012_1786267_-	NA	NA|135aa|up_7|NZ_CP046308.1_1786414_1786819_+	NA	NA|64aa|up_6|NZ_CP046308.1_1786815_1787007_+	NA	NA|385aa|up_5|NZ_CP046308.1_1787205_1788360_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP046308.1_1788593_1788851_+	NA	NA|104aa|up_3|NZ_CP046308.1_1788955_1789267_+	NA	NA|203aa|up_2|NZ_CP046308.1_1789686_1790295_+	NA	NA|470aa|up_1|NZ_CP046308.1_1790365_1791775_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP046308.1_1791771_1792584_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP046308.1_1794412_1795674_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP046308.1_1797697_1798039_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP046308.1_1798039_1799056_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP046308.1_1799068_1800217_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP046308.1_1800312_1801440_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP046308.1_1801436_1802345_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP046308.1_1802325_1803036_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP046308.1_1803045_1803420_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP046308.1_1803416_1805855_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_9|NZ_CP046308.1_1805851_1806796_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_009730215.1_ASM973021v1	NZ_CP046308	Mycobacterium tuberculosis strain FDAARGOS_751 chromosome, complete genome	4	1795709-1797649	3,3,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	Type III-D,Type III-B,Type III-C,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	26,26,25	26	TypeIII-D,TypeIII-B,TypeIII-C,TypeIII-A	DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	NA|85aa|up_9|NZ_CP046308.1_1786012_1786267_-,NA|135aa|up_8|NZ_CP046308.1_1786414_1786819_+,NA|64aa|up_7|NZ_CP046308.1_1786815_1787007_+,NA|86aa|up_5|NZ_CP046308.1_1788593_1788851_+,NA|104aa|up_4|NZ_CP046308.1_1788955_1789267_+,NA|203aa|up_3|NZ_CP046308.1_1789686_1790295_+,NA	NA|85aa|up_9|NZ_CP046308.1_1786012_1786267_-	NA	NA|135aa|up_8|NZ_CP046308.1_1786414_1786819_+	NA	NA|64aa|up_7|NZ_CP046308.1_1786815_1787007_+	NA	NA|385aa|up_6|NZ_CP046308.1_1787205_1788360_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP046308.1_1788593_1788851_+	NA	NA|104aa|up_4|NZ_CP046308.1_1788955_1789267_+	NA	NA|203aa|up_3|NZ_CP046308.1_1789686_1790295_+	NA	NA|470aa|up_2|NZ_CP046308.1_1790365_1791775_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP046308.1_1791771_1792584_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP046308.1_1794412_1795674_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP046308.1_1797697_1798039_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP046308.1_1798039_1799056_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP046308.1_1799068_1800217_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP046308.1_1800312_1801440_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP046308.1_1801436_1802345_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP046308.1_1802325_1803036_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP046308.1_1803045_1803420_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP046308.1_1803416_1805855_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_8|NZ_CP046308.1_1805851_1806796_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|216aa|down_9|NZ_CP046308.1_1806973_1807621_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_009730215.1_ASM973021v1	NZ_CP046308	Mycobacterium tuberculosis strain FDAARGOS_751 chromosome, complete genome	5	2479410-2480432	4	CRT	no		DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	Orphan	NCGGCGGNNNCGGCGGNN	18	0	0	NA	NA	NA	17	17	Orphan	DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	NA|297aa|up_5|NZ_CP046308.1_2471028_2471919_-,NA|205aa|down_6|NZ_CP046308.1_2487940_2488555_-,NA|237aa|down_7|NZ_CP046308.1_2488553_2489264_+	NA|297aa|up_9|NZ_CP046308.1_2466396_2467287_+	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|476aa|up_8|NZ_CP046308.1_2467291_2468719_+	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|218aa|up_7|NZ_CP046308.1_2468826_2469480_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|502aa|up_6|NZ_CP046308.1_2469518_2471024_-	PLN02592, PLN02592, ent-copalyl diphosphate synthase	NA|297aa|up_5|NZ_CP046308.1_2471028_2471919_-	NA	NA|613aa|up_4|NZ_CP046308.1_2471927_2473766_-	PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|330aa|up_3|NZ_CP046308.1_2473762_2474752_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|351aa|up_2|NZ_CP046308.1_2474751_2475804_-	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|131aa|up_1|NZ_CP046308.1_2476557_2476950_-	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins	NA|103aa|up_0|NZ_CP046308.1_2476949_2477258_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|291aa|down_0|NZ_CP046308.1_2480837_2481710_-	PLN02864, PLN02864, enoyl-CoA hydratase	NA|237aa|down_1|NZ_CP046308.1_2481783_2482494_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|651aa|down_2|NZ_CP046308.1_2482539_2484492_+	PRK07201, PRK07201, SDR family oxidoreductase	NA|288aa|down_3|NZ_CP046308.1_2484492_2485356_-	pfam02353, CMAS, Mycolic acid cyclopropane synthetase	NA|309aa|down_4|NZ_CP046308.1_2485379_2486306_+	cd02653, nuc_hydro_3, NH_3: A subgroup of nucleoside hydrolases	NA|528aa|down_5|NZ_CP046308.1_2486360_2487944_-	cd03468, PolY_like, DNA Polymerase Y-family	NA|205aa|down_6|NZ_CP046308.1_2487940_2488555_-	NA	NA|237aa|down_7|NZ_CP046308.1_2488553_2489264_+	NA	NA|526aa|down_8|NZ_CP046308.1_2489419_2490997_-	PRK00074, guaA, GMP synthase; Reviewed	NA|303aa|down_9|NZ_CP046308.1_2491008_2491917_-	TIGR03465, HpnD, squalene synthase HpnD
GCF_009730215.1_ASM973021v1	NZ_CP046308	Mycobacterium tuberculosis strain FDAARGOS_751 chromosome, complete genome	6	2525197-2525286	4	CRISPRCasFinder	no		DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	Orphan	CCAGGCGTTGGGCTGGCTGCCGAT	24	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	NA|77aa|up_7|NZ_CP046308.1_2518591_2518822_+,NA|121aa|up_6|NZ_CP046308.1_2518925_2519288_-,NA|73aa|up_2|NZ_CP046308.1_2523262_2523481_-,NA|121aa|down_0|NZ_CP046308.1_2526271_2526634_-,NA|52aa|down_2|NZ_CP046308.1_2528475_2528631_-,NA|52aa|down_3|NZ_CP046308.1_2528655_2528811_-,NA|238aa|down_6|NZ_CP046308.1_2532846_2533560_-	NA|169aa|up_9|NZ_CP046308.1_2516902_2517409_-	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|409aa|up_8|NZ_CP046308.1_2517405_2518632_-	PRK00053, alr, alanine racemase; Reviewed	NA|77aa|up_7|NZ_CP046308.1_2518591_2518822_+	NA	NA|121aa|up_6|NZ_CP046308.1_2518925_2519288_-	NA	NA|177aa|up_5|NZ_CP046308.1_2519450_2519981_+	pfam00823, PPE, PPE family	NA|177aa|up_4|NZ_CP046308.1_2520247_2520778_+	pfam00823, PPE, PPE family	NA|725aa|up_3|NZ_CP046308.1_2521095_2523270_-	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|73aa|up_2|NZ_CP046308.1_2523262_2523481_-	NA	NA|100aa|up_1|NZ_CP046308.1_2523975_2524275_+	pfam00934, PE, PE family	NA|181aa|up_0|NZ_CP046308.1_2524360_2524903_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|121aa|down_0|NZ_CP046308.1_2526271_2526634_-	NA	NA|179aa|down_1|NZ_CP046308.1_2526796_2527333_+	pfam00823, PPE, PPE family	NA|52aa|down_2|NZ_CP046308.1_2528475_2528631_-	NA	NA|52aa|down_3|NZ_CP046308.1_2528655_2528811_-	NA	NA|461aa|down_4|NZ_CP046308.1_2530003_2531386_-	TIGR01788, Glutamate_decarboxylase_alpha_GAD-alpha	NA|474aa|down_5|NZ_CP046308.1_2531423_2532845_-	pfam01256, Carb_kinase, Carbohydrate kinase	NA|238aa|down_6|NZ_CP046308.1_2532846_2533560_-	NA	NA|285aa|down_7|NZ_CP046308.1_2533570_2534425_-	pfam14494, DUF4436, Domain of unknown function (DUF4436)	NA|625aa|down_8|NZ_CP046308.1_2534646_2536521_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|159aa|down_9|NZ_CP046308.1_2536542_2537019_+	pfam10708, DUF2510, Protein of unknown function (DUF2510)
GCF_009730215.1_ASM973021v1	NZ_CP046308	Mycobacterium tuberculosis strain FDAARGOS_751 chromosome, complete genome	7	2785829-2785917	5	CRISPRCasFinder	no		DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	NA|257aa|up_8|NZ_CP046308.1_2776415_2777186_-,NA|119aa|up_3|NZ_CP046308.1_2782320_2782677_+,NA|52aa|up_2|NZ_CP046308.1_2782776_2782932_+,NA|233aa|up_0|NZ_CP046308.1_2784933_2785632_-,NA|126aa|down_6|NZ_CP046308.1_2791152_2791530_+	NA|288aa|up_9|NZ_CP046308.1_2774797_2775661_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP046308.1_2776415_2777186_-	NA	NA|549aa|up_7|NZ_CP046308.1_2777182_2778829_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP046308.1_2778825_2779689_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP046308.1_2779681_2780608_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP046308.1_2780609_2782235_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP046308.1_2782320_2782677_+	NA	NA|52aa|up_2|NZ_CP046308.1_2782776_2782932_+	NA	NA|652aa|up_1|NZ_CP046308.1_2782942_2784898_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP046308.1_2784933_2785632_-	NA	NA|173aa|down_0|NZ_CP046308.1_2785977_2786496_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP046308.1_2786496_2787480_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP046308.1_2787472_2788666_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP046308.1_2788671_2789493_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP046308.1_2789624_2790308_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP046308.1_2790307_2791045_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP046308.1_2791152_2791530_+	NA	NA|225aa|down_7|NZ_CP046308.1_2791628_2792303_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP046308.1_2792408_2793203_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP046308.1_2793209_2793665_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
GCF_009730215.1_ASM973021v1	NZ_CP046308	Mycobacterium tuberculosis strain FDAARGOS_751 chromosome, complete genome	8	3422393-3423191	5	CRT	no		DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	NA|61aa|up_0|NZ_CP046308.1_3421908_3422091_-,NA	NA|398aa|up_9|NZ_CP046308.1_3412086_3413280_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP046308.1_3413315_3414998_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP046308.1_3415014_3417210_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP046308.1_3417323_3418457_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP046308.1_3418453_3419074_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP046308.1_3419170_3419752_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP046308.1_3419681_3420407_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP046308.1_3420496_3421417_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP046308.1_3421456_3421885_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP046308.1_3421908_3422091_-	NA	NA|900aa|down_0|NZ_CP046308.1_3425265_3427965_-	pfam00934, PE, PE family	NA|926aa|down_1|NZ_CP046308.1_3428214_3430992_-	pfam00934, PE, PE family	NA|537aa|down_2|NZ_CP046308.1_3431282_3432893_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_3|NZ_CP046308.1_3432916_3433825_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_4|NZ_CP046308.1_3434048_3435944_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_5|NZ_CP046308.1_3435940_3437557_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_6|NZ_CP046308.1_3437553_3441546_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_7|NZ_CP046308.1_3441542_3441851_+	pfam00934, PE, PE family	NA|514aa|down_8|NZ_CP046308.1_3441853_3443395_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_9|NZ_CP046308.1_3443443_3443737_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_009730215.1_ASM973021v1	NZ_CP046308	Mycobacterium tuberculosis strain FDAARGOS_751 chromosome, complete genome	9	3423576-3423687	3	PILER-CR	no		DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	Orphan	CCGCCGTTGCCGCCGTTGCCGATCA	25	1	4	3423646-3423662|3423646-3423662|3423646-3423662|3423646-3423662	NZ_CP046308.1_1099089-1099105|NZ_CP046308.1_1480482-1480498|NZ_CP046308.1_2714901-2714917|NZ_CP046308.1_4283058-4283074	NA	2	2	Orphan	DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	NA|61aa|up_0|NZ_CP046308.1_3421908_3422091_-,NA	NA|398aa|up_9|NZ_CP046308.1_3412086_3413280_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP046308.1_3413315_3414998_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP046308.1_3415014_3417210_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP046308.1_3417323_3418457_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP046308.1_3418453_3419074_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP046308.1_3419170_3419752_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP046308.1_3419681_3420407_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP046308.1_3420496_3421417_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP046308.1_3421456_3421885_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP046308.1_3421908_3422091_-	NA	NA|900aa|down_0|NZ_CP046308.1_3425265_3427965_-	pfam00934, PE, PE family	NA|926aa|down_1|NZ_CP046308.1_3428214_3430992_-	pfam00934, PE, PE family	NA|537aa|down_2|NZ_CP046308.1_3431282_3432893_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_3|NZ_CP046308.1_3432916_3433825_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_4|NZ_CP046308.1_3434048_3435944_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_5|NZ_CP046308.1_3435940_3437557_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_6|NZ_CP046308.1_3437553_3441546_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_7|NZ_CP046308.1_3441542_3441851_+	pfam00934, PE, PE family	NA|514aa|down_8|NZ_CP046308.1_3441853_3443395_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_9|NZ_CP046308.1_3443443_3443737_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_009730215.1_ASM973021v1	NZ_CP046308	Mycobacterium tuberculosis strain FDAARGOS_751 chromosome, complete genome	10	3458253-3458951	6	CRISPRCasFinder	no		DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	3458541-3458582|3458616-3458648	NZ_CP046308.1_3466557-3466598|NZ_CP046308.1_3465372-3465404	NA	10	10	Orphan	DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	NA|101aa|up_4|NZ_CP046308.1_3455265_3455568_+,NA|161aa|down_1|NZ_CP046308.1_3468346_3468829_-,NA|410aa|down_5|NZ_CP046308.1_3470945_3472175_+	NA|262aa|up_9|NZ_CP046308.1_3450089_3450875_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP046308.1_3450863_3451667_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP046308.1_3451676_3453074_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|549aa|up_6|NZ_CP046308.1_3453252_3454899_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP046308.1_3455041_3455269_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP046308.1_3455265_3455568_+	NA	NA|74aa|up_3|NZ_CP046308.1_3455615_3455837_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP046308.1_3455833_3456259_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP046308.1_3456394_3457027_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP046308.1_3457023_3457932_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP046308.1_3467687_3468359_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP046308.1_3468346_3468829_-	NA	NA|239aa|down_2|NZ_CP046308.1_3468886_3469603_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP046308.1_3469704_3470361_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP046308.1_3470430_3470922_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP046308.1_3470945_3472175_+	NA	NA|621aa|down_6|NZ_CP046308.1_3472329_3474192_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP046308.1_3474263_3474650_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP046308.1_3474652_3475315_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP046308.1_3475375_3476260_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_009730215.1_ASM973021v1	NZ_CP046308	Mycobacterium tuberculosis strain FDAARGOS_751 chromosome, complete genome	11	3723636-3723773	6	CRT	no		DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	Orphan	CCGCCGACCACGCCGGTG	18	2	3	3723654-3723671|3723654-3723671|3723738-3723755	NZ_CP046308.1_61038-61055|NZ_CP046308.1_3111118-3111135|NZ_CP046308.1_4067990-4068007	NA	3	3	Orphan	DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	NA|54aa|up_8|NZ_CP046308.1_3714380_3714542_-,NA|76aa|up_5|NZ_CP046308.1_3716703_3716931_+,NA|478aa|up_0|NZ_CP046308.1_3720651_3722085_-,NA|450aa|down_2|NZ_CP046308.1_3725408_3726758_-,NA|93aa|down_5|NZ_CP046308.1_3728288_3728567_-	NA|406aa|up_9|NZ_CP046308.1_3713166_3714384_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_8|NZ_CP046308.1_3714380_3714542_-	NA	NA|106aa|up_7|NZ_CP046308.1_3714588_3714906_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|582aa|up_6|NZ_CP046308.1_3715052_3716798_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP046308.1_3716703_3716931_+	NA	NA|336aa|up_4|NZ_CP046308.1_3716826_3717834_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP046308.1_3717915_3718794_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP046308.1_3718810_3719605_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP046308.1_3719601_3720642_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP046308.1_3720651_3722085_-	NA	NA|211aa|down_0|NZ_CP046308.1_3724096_3724729_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP046308.1_3724725_3725388_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP046308.1_3725408_3726758_-	NA	NA|381aa|down_3|NZ_CP046308.1_3726769_3727912_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP046308.1_3727926_3728229_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP046308.1_3728288_3728567_-	NA	NA|418aa|down_6|NZ_CP046308.1_3728563_3729817_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP046308.1_3729936_3730323_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP046308.1_3730385_3731270_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP046308.1_3731365_3732268_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_009730215.1_ASM973021v1	NZ_CP046308	Mycobacterium tuberculosis strain FDAARGOS_751 chromosome, complete genome	12	3784416-3784492	7	CRISPRCasFinder	no	c2c9_V-U4	DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	NA,NA	NA|136aa|up_9|NZ_CP046308.1_3770311_3770719_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP046308.1_3770778_3771465_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP046308.1_3771618_3774252_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP046308.1_3774274_3776662_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP046308.1_3776799_3777522_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP046308.1_3777518_3778316_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP046308.1_3778317_3779205_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP046308.1_3779210_3780425_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|344aa|up_1|NZ_CP046308.1_3780421_3781453_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|up_0|NZ_CP046308.1_3781449_3782895_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP046308.1_3785627_3787178_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP046308.1_3787229_3787622_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP046308.1_3787618_3787876_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP046308.1_3788058_3789294_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP046308.1_3789544_3789958_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP046308.1_3789954_3790191_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP046308.1_3790294_3790801_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP046308.1_3790914_3791385_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP046308.1_3791428_3792190_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP046308.1_3792246_3792558_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_009730215.1_ASM973021v1	NZ_CP046308	Mycobacterium tuberculosis strain FDAARGOS_751 chromosome, complete genome	13	3931752-3932816	8	CRISPRCasFinder	no		DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	Orphan	GGCGGGGCCGGCGGGGCCGGCGGG	24	10	39	3931776-3931790|3931776-3931790|3931776-3931790|3931776-3931790|3931854-3931874|3931854-3931874|3931854-3931874|3931854-3931874|3931854-3931874|3931854-3931874|3931854-3931874|3931854-3931874|3931854-3931874|3931854-3931874|3931854-3931874|3931854-3931874|3931854-3931874|3931854-3931874|3931854-3931874|3931854-3931874|3931854-3931874|3931854-3931874|3931854-3931874|3931854-3931874|3931854-3931874|3931899-3931913|3931938-3931955|3931980-3932003|3932073-3932102|3932073-3932102|3932127-3932147|3932127-3932147|3932127-3932147|3932127-3932147|3932259-3932279|3932543-3932557|3932543-3932557|3932543-3932557|3932627-3932656	NZ_CP046308.1_653752-653738|NZ_CP046308.1_3345320-3345306|NZ_CP046308.1_3424603-3424589|NZ_CP046308.1_4018613-4018627|NZ_CP046308.1_308651-308631|NZ_CP046308.1_653668-653648|NZ_CP046308.1_710293-710273|NZ_CP046308.1_1619667-1619647|NZ_CP046308.1_2609903-2609923|NZ_CP046308.1_2625741-2625761|NZ_CP046308.1_3715605-3715625|NZ_CP046308.1_3930511-3930531|NZ_CP046308.1_4189447-4189427|NZ_CP046308.1_142943-142923|NZ_CP046308.1_225021-225001|NZ_CP046308.1_710413-710393|NZ_CP046308.1_727047-727027|NZ_CP046308.1_1099956-1099936|NZ_CP046308.1_1480899-1480879|NZ_CP046308.1_1836904-1836924|NZ_CP046308.1_2769139-2769159|NZ_CP046308.1_3220685-3220705|NZ_CP046308.1_3239209-3239229|NZ_CP046308.1_3428835-3428815|NZ_CP046308.1_4308870-4308890|NZ_CP046308.1_4415123-4415109|NZ_CP046308.1_1537597-1537580|NZ_CP046308.1_518176-518153|NZ_CP046308.1_653407-653378|NZ_CP046308.1_3427224-3427195|NZ_CP046308.1_2416468-2416448|NZ_CP046308.1_289482-289462|NZ_CP046308.1_289659-289639|NZ_CP046308.1_3426111-3426091|NZ_CP046308.1_3427134-3427114|NZ_CP046308.1_3257315-3257329|NZ_CP046308.1_3429804-3429790|NZ_CP046308.1_3430077-3430063|NZ_CP046308.1_1099614-1099585	NA	23	23	Orphan	DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	NA|71aa|up_9|NZ_CP046308.1_3922678_3922891_+,NA|176aa|up_6|NZ_CP046308.1_3924755_3925283_+,NA|186aa|up_4|NZ_CP046308.1_3926808_3927366_-,NA|46aa|down_2|NZ_CP046308.1_3934946_3935084_-,NA|53aa|down_3|NZ_CP046308.1_3935069_3935228_+,NA|82aa|down_4|NZ_CP046308.1_3935242_3935488_+	NA|71aa|up_9|NZ_CP046308.1_3922678_3922891_+	NA	NA|183aa|up_8|NZ_CP046308.1_3923039_3923588_+	TIGR03086, TIGR03086, TIGR03086 family protein	NA|283aa|up_7|NZ_CP046308.1_3923792_3924641_+	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|176aa|up_6|NZ_CP046308.1_3924755_3925283_+	NA	NA|154aa|up_5|NZ_CP046308.1_3925969_3926431_+	pfam00934, PE, PE family	NA|186aa|up_4|NZ_CP046308.1_3926808_3927366_-	NA	NA|169aa|up_3|NZ_CP046308.1_3927362_3927869_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|49aa|up_2|NZ_CP046308.1_3927981_3928128_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|176aa|up_1|NZ_CP046308.1_3928076_3928604_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|785aa|up_0|NZ_CP046308.1_3928623_3930978_+	pfam00934, PE, PE family	NA|86aa|down_0|NZ_CP046308.1_3934156_3934414_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|143aa|down_1|NZ_CP046308.1_3934437_3934866_+	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|46aa|down_2|NZ_CP046308.1_3934946_3935084_-	NA	NA|53aa|down_3|NZ_CP046308.1_3935069_3935228_+	NA	NA|82aa|down_4|NZ_CP046308.1_3935242_3935488_+	NA	NA|295aa|down_5|NZ_CP046308.1_3935556_3936441_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|391aa|down_6|NZ_CP046308.1_3936451_3937624_-	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|511aa|down_7|NZ_CP046308.1_3937630_3939163_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|585aa|down_8|NZ_CP046308.1_3939368_3941123_+	pfam00934, PE, PE family	NA|656aa|down_9|NZ_CP046308.1_3941312_3943280_-	pfam00823, PPE, PPE family
GCF_009730215.1_ASM973021v1	NZ_CP046308	Mycobacterium tuberculosis strain FDAARGOS_751 chromosome, complete genome	14	3932969-3934018	9	CRISPRCasFinder	no		DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	Orphan	GGCGGGGCCGGCGGGGCCGGCGGG	24	8	24	3933062-3933094|3933119-3933136|3933161-3933181|3933161-3933181|3933206-3933226|3933206-3933226|3933290-3933310|3933290-3933310|3933425-3933445|3933425-3933445|3933425-3933445|3933425-3933445|3933425-3933445|3933425-3933445|3933425-3933445|3933425-3933445|3933425-3933445|3933425-3933445|3933425-3933445|3933425-3933445|3933425-3933445|3933638-3933655|3933818-3933838|3933818-3933838	NZ_CP046308.1_3423277-3423245|NZ_CP046308.1_3570635-3570618|NZ_CP046308.1_653026-653006|NZ_CP046308.1_3429024-3429004|NZ_CP046308.1_224859-224839|NZ_CP046308.1_4308906-4308926|NZ_CP046308.1_224859-224839|NZ_CP046308.1_4308906-4308926|NZ_CP046308.1_727047-727027|NZ_CP046308.1_1619568-1619548|NZ_CP046308.1_2605447-2605467|NZ_CP046308.1_3424054-3424034|NZ_CP046308.1_3424141-3424121|NZ_CP046308.1_3425832-3425812|NZ_CP046308.1_3425910-3425890|NZ_CP046308.1_3427125-3427105|NZ_CP046308.1_3430155-3430135|NZ_CP046308.1_3430239-3430219|NZ_CP046308.1_1728118-1728138|NZ_CP046308.1_3428763-3428743|NZ_CP046308.1_3929488-3929508|NZ_CP046308.1_651851-651834|NZ_CP046308.1_1099090-1099110|NZ_CP046308.1_1597807-1597787	NA	21	21	Orphan	DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	NA|71aa|up_9|NZ_CP046308.1_3922678_3922891_+,NA|176aa|up_6|NZ_CP046308.1_3924755_3925283_+,NA|186aa|up_4|NZ_CP046308.1_3926808_3927366_-,NA|46aa|down_2|NZ_CP046308.1_3934946_3935084_-,NA|53aa|down_3|NZ_CP046308.1_3935069_3935228_+,NA|82aa|down_4|NZ_CP046308.1_3935242_3935488_+	NA|71aa|up_9|NZ_CP046308.1_3922678_3922891_+	NA	NA|183aa|up_8|NZ_CP046308.1_3923039_3923588_+	TIGR03086, TIGR03086, TIGR03086 family protein	NA|283aa|up_7|NZ_CP046308.1_3923792_3924641_+	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|176aa|up_6|NZ_CP046308.1_3924755_3925283_+	NA	NA|154aa|up_5|NZ_CP046308.1_3925969_3926431_+	pfam00934, PE, PE family	NA|186aa|up_4|NZ_CP046308.1_3926808_3927366_-	NA	NA|169aa|up_3|NZ_CP046308.1_3927362_3927869_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|49aa|up_2|NZ_CP046308.1_3927981_3928128_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|176aa|up_1|NZ_CP046308.1_3928076_3928604_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|785aa|up_0|NZ_CP046308.1_3928623_3930978_+	pfam00934, PE, PE family	NA|86aa|down_0|NZ_CP046308.1_3934156_3934414_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|143aa|down_1|NZ_CP046308.1_3934437_3934866_+	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|46aa|down_2|NZ_CP046308.1_3934946_3935084_-	NA	NA|53aa|down_3|NZ_CP046308.1_3935069_3935228_+	NA	NA|82aa|down_4|NZ_CP046308.1_3935242_3935488_+	NA	NA|295aa|down_5|NZ_CP046308.1_3935556_3936441_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|391aa|down_6|NZ_CP046308.1_3936451_3937624_-	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|511aa|down_7|NZ_CP046308.1_3937630_3939163_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|585aa|down_8|NZ_CP046308.1_3939368_3941123_+	pfam00934, PE, PE family	NA|656aa|down_9|NZ_CP046308.1_3941312_3943280_-	pfam00823, PPE, PPE family
GCF_009730215.1_ASM973021v1	NZ_CP046308	Mycobacterium tuberculosis strain FDAARGOS_751 chromosome, complete genome	15	4019874-4020905	7	CRT	no	csa3	DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	2	4020741-4020776|4020741-4020776	NZ_CP046308.1_4305658-4305693|NZ_CP046308.1_3767518-3767483	NA	21	21	Orphan	DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	NA,NA|184aa|down_2|NZ_CP046308.1_4024915_4025467_-,NA|81aa|down_9|NZ_CP046308.1_4032288_4032531_+	NA|685aa|up_9|NZ_CP046308.1_4007510_4009565_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP046308.1_4009730_4010900_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP046308.1_4010987_4012004_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP046308.1_4012165_4012807_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP046308.1_4012887_4013943_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP046308.1_4013994_4014387_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP046308.1_4014444_4014867_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP046308.1_4014828_4015119_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP046308.1_4015223_4016129_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP046308.1_4016147_4016963_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NZ_CP046308.1_4021174_4023823_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP046308.1_4024290_4024935_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP046308.1_4024915_4025467_-	NA	NA|421aa|down_3|NZ_CP046308.1_4025547_4026809_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|241aa|down_4|NZ_CP046308.1_4026905_4027628_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_5|NZ_CP046308.1_4027698_4028727_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_6|NZ_CP046308.1_4029415_4030186_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_7|NZ_CP046308.1_4030272_4031085_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_8|NZ_CP046308.1_4031152_4032013_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_9|NZ_CP046308.1_4032288_4032531_+	NA
GCF_009730215.1_ASM973021v1	NZ_CP046308	Mycobacterium tuberculosis strain FDAARGOS_751 chromosome, complete genome	16	4059319-4059570	4	PILER-CR	no		DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	Orphan	CGGGTGGTGCCAGGTCGGCGGGCGCGGGTGGCGCCAGTTCGGCGGGCGCGGGTGGCGCCAGGT	63	1	1	4059492-4059547	NZ_CP046308.1_4059620-4059675	NA	2	2	Orphan	DinG,csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,RT	NA|67aa|up_3|NZ_CP046308.1_4057417_4057618_+,NA	NA|158aa|up_9|NZ_CP046308.1_4047941_4048415_+	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|398aa|up_8|NZ_CP046308.1_4048411_4049605_-	PRK07777, PRK07777, putative succinyldiaminopimelate transaminase DapC	NA|404aa|up_7|NZ_CP046308.1_4049761_4050973_+	PRK08242, PRK08242, acetyl-CoA C-acetyltransferase	NA|721aa|up_6|NZ_CP046308.1_4050977_4053140_+	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|543aa|up_5|NZ_CP046308.1_4053207_4054836_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|757aa|up_4|NZ_CP046308.1_4055079_4057350_-	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain	NA|67aa|up_3|NZ_CP046308.1_4057417_4057618_+	NA	NA|168aa|up_2|NZ_CP046308.1_4057627_4058131_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|161aa|up_1|NZ_CP046308.1_4058127_4058610_+	cd00886, MogA_MoaB, MogA_MoaB family	NA|142aa|up_0|NZ_CP046308.1_4058606_4059032_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|93aa|down_0|NZ_CP046308.1_4060720_4060999_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|361aa|down_1|NZ_CP046308.1_4061002_4062085_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|131aa|down_2|NZ_CP046308.1_4062081_4062474_-	PRK11770, PRK11770, YccF domain-containing protein	NA|136aa|down_3|NZ_CP046308.1_4062638_4063046_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|610aa|down_4|NZ_CP046308.1_4063164_4064994_-	pfam00934, PE, PE family	NA|651aa|down_5|NZ_CP046308.1_4065254_4067207_+	cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase	NA|387aa|down_6|NZ_CP046308.1_4067295_4068456_-	COG4398, COG4398, Uncharacterized protein conserved in bacteria [Function unknown]	NA|163aa|down_7|NZ_CP046308.1_4068555_4069044_-	pfam10969, DUF2771, Protein of unknown function (DUF2771)	NA|549aa|down_8|NZ_CP046308.1_4069040_4070687_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|263aa|down_9|NZ_CP046308.1_4070824_4071613_+	pfam11228, DUF3027, Protein of unknown function (DUF3027)
