The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP046279	Salmonella enterica strain FDAARGOS_707 chromosome, complete genome	4556079	420246	426898	4556079		Salmonella_phage(28.57%)	10	NA	NA
WP_077905325.1|420246_420561_-	recombinase family protein	NA	A0A1S6L009	Salmonella_phage	86.1	4.3e-40
WP_000727928.1|420939_421365_-	peptidase	NA	NA	NA	NA	NA
WP_001605118.1|421291_421591_-	putative pertussis-like toxin subunit	NA	A0A0U2KD26	Escherichia_phage	54.3	3.2e-13
WP_001605117.1|421629_421770_-	hypothetical protein	NA	A0A0U2KD26	Escherichia_phage	77.1	6.5e-09
WP_042835726.1|422002_422191_-	hypothetical protein	NA	S4TSR3	Salmonella_phage	79.4	4.1e-22
WP_001605114.1|422661_423384_+	hypothetical protein	NA	A0A0P0ZCT1	Stx2-converting_phage	38.9	4.3e-35
WP_103117055.1|423684_424071_-	DUF4102 domain-containing protein	NA	K7PGY1	Enterobacteria_phage	58.3	6.0e-28
WP_001146150.1|424207_425098_+	peptide ABC transporter permease SapC	NA	NA	NA	NA	NA
WP_001128869.1|425097_426090_+	peptide ABC transporter ATP-binding protein SapD	NA	NA	NA	NA	NA
WP_000230462.1|426091_426898_+	peptide ABC transporter ATP-binding protein SapF	NA	G3M9Y6	Bacillus_virus	27.4	4.6e-14
>prophage 2
NZ_CP046279	Salmonella enterica strain FDAARGOS_707 chromosome, complete genome	4556079	601458	608077	4556079	integrase	Enterobacteria_phage(16.67%)	11	602722:602736	613621:613635
WP_000348550.1|601458_601950_-	DUF1441 family protein	NA	Q9EYD0	Enterobacteria_phage	56.2	7.6e-44
WP_024134652.1|602004_602187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000789530.1|602251_602419_+	lytic enzyme	NA	NA	NA	NA	NA
WP_001633683.1|602675_603209_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	42.4	1.6e-10
602722:602736	attL	CGTTCACACGTCATT	NA	NA	NA	NA
WP_001014089.1|603205_603493_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	95.1	1.9e-39
WP_001530910.1|603523_604630_+	exodeoxyribonuclease 8 (exodeoxyribonuclease viii)	NA	Q9QF34	Lambdoid_phage	66.7	3.3e-55
WP_023213131.1|604626_605706_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.5	1.1e-100
WP_000722368.1|606088_606442_-	YebY family protein	NA	NA	NA	NA	NA
WP_023233025.1|606458_607334_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA	NA
WP_000168393.1|607334_607709_-	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
WP_000856224.1|607846_608077_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
613621:613635	attR	CGTTCACACGTCATT	NA	NA	NA	NA
>prophage 3
NZ_CP046279	Salmonella enterica strain FDAARGOS_707 chromosome, complete genome	4556079	710739	717987	4556079		Morganella_phage(33.33%)	8	NA	NA
WP_001157315.1|710739_712170_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_023263105.1|712243_712939_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.7	2.1e-07
WP_023263104.1|713018_713330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001080681.1|713978_715172_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	57.0	1.3e-110
WP_024131109.1|715430_715619_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208508.1|715629_715842_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.6	1.1e-20
WP_103116993.1|716296_717565_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.7	7.1e-227
WP_000394197.1|717567_717987_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 4
NZ_CP046279	Salmonella enterica strain FDAARGOS_707 chromosome, complete genome	4556079	794900	806389	4556079		Bacillus_phage(25.0%)	10	NA	NA
WP_061386929.1|794900_796274_-	phosphomannomutase CpsG	NA	A0A127AWJ1	Bacillus_phage	27.5	7.6e-33
WP_103117072.1|796277_797726_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	32.5	1.2e-57
WP_023213992.1|797718_798219_-	GDP-mannose mannosyl hydrolase	NA	NA	NA	NA	NA
WP_079982047.1|798221_799187_-	GDP-L-fucose synthase	NA	D1LW79	Prochlorococcus_phage	50.8	1.9e-86
WP_020898977.1|799189_800308_-	GDP-mannose 4,6-dehydratase	NA	M1HXY1	Acanthocystis_turfacea_Chlorella_virus	65.3	5.3e-133
WP_080188744.1|800328_801345_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_023214139.1|801366_802380_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	50.2	1.2e-88
WP_023206157.1|802718_803612_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	3.6e-44
WP_023214140.1|803838_804834_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0QG29	Shearwaterpox_virus	26.0	3.3e-09
WP_024154991.1|804985_806389_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	2.3e-21
>prophage 5
NZ_CP046279	Salmonella enterica strain FDAARGOS_707 chromosome, complete genome	4556079	873554	882726	4556079	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195345.1|873554_875588_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
WP_000703136.1|875829_876288_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	73.2	7.6e-54
WP_001221797.1|876459_876990_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|877046_877514_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598637.1|877560_878280_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272850.1|878276_879962_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_001240416.1|880184_880916_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|880975_881083_+	protein YohO	NA	NA	NA	NA	NA
WP_000824854.1|881063_881795_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|881778_882726_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
>prophage 6
NZ_CP046279	Salmonella enterica strain FDAARGOS_707 chromosome, complete genome	4556079	4163496	4172714	4556079	tail,integrase	Salmonella_phage(80.0%)	12	4156038:4156051	4175083:4175096
4156038:4156051	attL	TCAAGCTGACCGAT	NA	NA	NA	NA
WP_001633054.1|4163496_4164540_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	54.6	5.5e-100
WP_077911905.1|4164620_4166618_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_001633058.1|4166636_4167227_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	40.3	6.1e-40
WP_023212954.1|4167322_4167544_+	regulator for prophage	NA	NA	NA	NA	NA
WP_023212955.1|4167576_4168086_+	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	88.2	2.9e-78
WP_071785514.1|4168093_4168213_+	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	94.9	2.5e-17
WP_023212956.1|4168257_4168599_+	DUF5347 domain-containing protein	NA	A0A1S6L019	Salmonella_phage	95.6	4.8e-53
WP_023212957.1|4168666_4168885_+	DUF2732 family protein	NA	A0A1S6L021	Salmonella_phage	93.8	9.2e-26
WP_001633062.1|4168877_4169105_+	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	88.0	2.4e-32
WP_001633063.1|4169101_4169425_+	DUF3850 domain-containing protein	NA	A0A1S6KVH3	Escherichia_phage	45.9	6.2e-10
WP_023212958.1|4169393_4170266_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	76.6	3.3e-114
WP_031603936.1|4172258_4172714_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	99.2	7.5e-62
4175083:4175096	attR	ATCGGTCAGCTTGA	NA	NA	NA	NA
>prophage 7
NZ_CP046279	Salmonella enterica strain FDAARGOS_707 chromosome, complete genome	4556079	4465155	4518927	4556079	terminase,holin,protease,tail,capsid,lysis,portal,head,tRNA,integrase	Salmonella_phage(50.0%)	68	4469240:4469255	4511941:4511956
WP_000004540.1|4465155_4466262_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_023213049.1|4466315_4466777_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000825956.1|4466788_4467118_-	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_001249416.1|4467114_4467780_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
WP_000444509.1|4467951_4469202_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	6.7e-20
4469240:4469255	attL	GTTCCCGTTTTTATTA	NA	NA	NA	NA
WP_000741325.1|4469315_4470458_-|integrase	tyrosine-type recombinase/integrase	integrase	O21929	Phage_21	80.3	8.2e-174
WP_000089141.1|4470447_4470684_-	excisionase	NA	NA	NA	NA	NA
WP_023171066.1|4471444_4471918_-	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	78.8	2.1e-67
WP_100514545.1|4471917_4472592_-	ead/Ea22-like family protein	NA	A0A0F6R7P8	Escherichia_coli_O157_typing_phage	94.3	5.4e-40
WP_000008351.1|4472719_4473259_-	hypothetical protein	NA	A0A192Y8M4	Salmonella_phage	100.0	2.6e-98
WP_000080410.1|4473395_4474223_-	YfdQ family protein	NA	Q8HAA2	Salmonella_phage	98.9	1.1e-151
WP_000997190.1|4474280_4474652_-	hypothetical protein	NA	Q8HAA1	Salmonella_phage	100.0	1.1e-63
WP_001020636.1|4475465_4476161_-	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	100.0	3.2e-128
WP_001191666.1|4476258_4476483_+	helix-turn-helix transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
WP_000509731.1|4476511_4477066_+	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	100.0	6.9e-102
WP_156015296.1|4477062_4478205_+	peptidase	NA	Q8HA97	Salmonella_phage	86.0	4.5e-180
WP_000620702.1|4478201_4478426_+	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
WP_079819575.1|4478422_4479397_+	hypothetical protein	NA	A0A1C9IHW0	Salmonella_phage	98.1	4.1e-166
WP_000054227.1|4479393_4479867_+	PerC family transcriptional regulator	NA	A0A1C9IHW0	Salmonella_phage	94.6	3.9e-53
WP_080151267.1|4479863_4480745_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1C9II58	Salmonella_phage	98.0	1.8e-168
WP_080151266.1|4480753_4481143_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A1C9IIA0	Salmonella_phage	97.7	1.6e-68
WP_001061457.1|4481159_4482020_+	KilA-N domain-containing protein	NA	Q8HA92	Salmonella_phage	100.0	2.9e-163
WP_156015298.1|4482027_4483017_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.3	3.5e-189
WP_156015300.1|4483031_4483610_+	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	56.7	4.2e-49
WP_156015302.1|4483810_4484536_+	pertussis toxin-like subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	66.2	5.2e-81
WP_156015304.1|4484667_4485093_+	subtilase cytotoxin subunit B-like protein	NA	NA	NA	NA	NA
WP_000658039.1|4485619_4485808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024157364.1|4485897_4486287_+	membrane protein	NA	K7PHB9	Enterobacterial_phage	72.5	2.8e-41
WP_134929479.1|4486273_4486555_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	9.7e-36
WP_024157365.1|4486554_4487169_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	92.6	3.6e-107
WP_077908725.1|4487201_4487648_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	83.9	1.2e-56
WP_023233167.1|4487827_4488331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023137451.1|4488398_4488743_+	HNH endonuclease	NA	K7P7P6	Enterobacteria_phage	73.9	3.9e-47
WP_000919034.1|4488875_4489340_+|terminase	phage terminase small subunit P27 family	terminase	Q9B019	Phage_GMSE-1	62.1	1.3e-48
WP_031234234.1|4489293_4491036_+|terminase	terminase large subunit	terminase	A0A0U2C138	Paracoccus_phage	44.4	5.9e-139
WP_000002706.1|4491035_4492340_+|portal	phage portal protein	portal	K7PJU5	Enterobacteria_phage	86.9	5.1e-220
WP_023194831.1|4492353_4493202_+|protease	Clp protease ClpP	protease	K7PH05	Enterobacteria_phage	88.2	4.4e-132
WP_010835821.1|4493211_4494429_+|capsid	phage major capsid protein	capsid	K7PM57	Enterobacteria_phage	88.9	6.0e-199
WP_094965311.1|4494333_4494753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001648719.1|4494723_4495050_+|head,tail	phage gp6-like head-tail connector protein	head,tail	K7PKT4	Enterobacteria_phage	85.2	5.2e-49
WP_020898872.1|4495059_4495398_+|head	phage head closure protein	head	A0A2H4JHK5	uncultured_Caudovirales_phage	70.5	6.6e-39
WP_134929478.1|4495394_4495844_+	HK97 gp10 family phage protein	NA	S4TR46	Salmonella_phage	94.6	1.0e-71
WP_020898871.1|4495840_4496188_+	DUF3168 domain-containing protein	NA	S4TTG3	Salmonella_phage	77.9	8.3e-45
WP_020898870.1|4496245_4496950_+	immunoglobulin domain-containing protein	NA	K7PHL2	Enterobacterial_phage	75.2	1.2e-93
WP_001129938.1|4496977_4497349_+|tail	phage tail protein	tail	S4TSQ0	Salmonella_phage	92.6	3.4e-60
WP_024134502.1|4497372_4497651_+	DUF4035 domain-containing protein	NA	S4TND7	Salmonella_phage	100.0	1.9e-44
WP_001805532.1|4497704_4498160_+	hypothetical protein	NA	A0A0S2SY43	Pseudomonas_phage	40.8	8.1e-08
WP_024157369.1|4498192_4501483_+|tail	phage tail tape measure protein	tail	K7PKG1	Enterobacteria_phage	66.5	0.0e+00
WP_000171561.1|4501528_4501840_+	hypothetical protein	NA	S4TNM6	Salmonella_phage	80.2	1.7e-36
WP_000064923.1|4501878_4502091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000729325.1|4502256_4502850_+	hypothetical protein	NA	S4TSP7	Salmonella_phage	100.0	8.7e-111
WP_000967282.1|4502849_4503434_+	hypothetical protein	NA	S4TND4	Salmonella_phage	100.0	1.5e-107
WP_000682267.1|4503440_4503839_+	hypothetical protein	NA	S4TR39	Salmonella_phage	100.0	8.8e-75
WP_052938548.1|4503838_4506559_+	DUF1983 domain-containing protein	NA	S4TTF5	Salmonella_phage	98.5	0.0e+00
WP_071653450.1|4506567_4507527_+	hypothetical protein	NA	H6WRW5	Salmonella_phage	98.7	9.0e-182
WP_039517962.1|4507537_4508842_+	hypothetical protein	NA	I6R0Q9	Salmonella_phage	58.7	2.1e-133
WP_023194404.1|4509083_4509503_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	59.8	3.8e-36
WP_000457670.1|4509505_4510774_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	99.1	3.4e-245
WP_000334550.1|4510766_4511438_-	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	61.3	1.8e-80
WP_012218897.1|4511691_4511904_+	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	90.7	2.5e-20
WP_024155303.1|4512349_4513474_+	type III secretion system effector SopF	NA	NA	NA	NA	NA
4511941:4511956	attR	GTTCCCGTTTTTATTA	NA	NA	NA	NA
WP_000275698.1|4514516_4514930_+	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	37.7	5.5e-19
WP_000733298.1|4514946_4515675_+	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	52.5	1.2e-61
WP_000158845.1|4515858_4516401_+	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001277616.1|4516548_4516926_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_001529135.1|4516998_4517808_-	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_023213051.1|4518305_4518470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000497451.1|4518687_4518927_-	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
