assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009728915.1_ASM972891v1	NZ_CP034089	Bifidobacterium longum strain LTBL16 chromosome, complete genome	1	297529-297614	1	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,casR	Orphan	GACAGCTCCCGCCAGCGGGAGCACTT	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,casR	NA,NA|695aa|down_6|NZ_CP034089.1_306070_308155_+	NA|560aa|up_9|NZ_CP034089.1_285029_286709_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|245aa|up_8|NZ_CP034089.1_286942_287677_+	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|903aa|up_7|NZ_CP034089.1_287760_290469_-	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|94aa|up_6|NZ_CP034089.1_290580_290862_+	COG1937, COG1937, Uncharacterized protein conserved in bacteria [Function unknown]	NA|468aa|up_5|NZ_CP034089.1_290925_292329_+	pfam02646, RmuC, RmuC family	NA|186aa|up_4|NZ_CP034089.1_292397_292955_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|283aa|up_3|NZ_CP034089.1_293048_293897_+	cd18096, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU	NA|100aa|up_2|NZ_CP034089.1_294063_294363_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|514aa|up_1|NZ_CP034089.1_294366_295908_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|500aa|up_0|NZ_CP034089.1_295933_297433_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|346aa|down_0|NZ_CP034089.1_297755_298793_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|105aa|down_1|NZ_CP034089.1_298803_299118_+	pfam10611, DUF2469, Protein of unknown function (DUF2469)	NA|607aa|down_2|NZ_CP034089.1_299324_301145_+	cd07061, HP_HAP_like, Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction	NA|538aa|down_3|NZ_CP034089.1_301363_302977_+	PRK07208, PRK07208, hypothetical protein; Provisional	NA|690aa|down_4|NZ_CP034089.1_303182_305252_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|130aa|down_5|NZ_CP034089.1_305559_305949_+	PRK09239, PRK09239, chorismate mutase; Provisional	NA|695aa|down_6|NZ_CP034089.1_306070_308155_+	NA	NA|947aa|down_7|NZ_CP034089.1_308380_311221_-	NF000540, alt_ValS, valine--tRNA ligase	NA|489aa|down_8|NZ_CP034089.1_311259_312726_-	cd08494, PBP2_NikA_DppA_OppA_like_6, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|229aa|down_9|NZ_CP034089.1_312847_313534_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
GCF_009728915.1_ASM972891v1	NZ_CP034089	Bifidobacterium longum strain LTBL16 chromosome, complete genome	2	841614-841688	2	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,casR	Orphan	TAGAGGTGTCAAAATGACACCTCT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,casR	NA|142aa|up_6|NZ_CP034089.1_835638_836064_+,NA|168aa|up_5|NZ_CP034089.1_836139_836643_-,NA|326aa|up_2|NZ_CP034089.1_839361_840339_+,NA|157aa|up_1|NZ_CP034089.1_840335_840806_+,NA|73aa|up_0|NZ_CP034089.1_840831_841050_+,NA|140aa|down_1|NZ_CP034089.1_843788_844208_+,NA|162aa|down_2|NZ_CP034089.1_844309_844795_-,NA|133aa|down_3|NZ_CP034089.1_845456_845855_+,NA|97aa|down_4|NZ_CP034089.1_845851_846142_+,NA|179aa|down_5|NZ_CP034089.1_846138_846675_+,NA|62aa|down_6|NZ_CP034089.1_846671_846857_+,NA|163aa|down_7|NZ_CP034089.1_846853_847342_+,NA|178aa|down_9|NZ_CP034089.1_848330_848864_-	NA|481aa|up_9|NZ_CP034089.1_832399_833842_+	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism]	NA|254aa|up_8|NZ_CP034089.1_833989_834751_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|166aa|up_7|NZ_CP034089.1_834826_835324_-	pfam08667, BetR, BetR domain	NA|142aa|up_6|NZ_CP034089.1_835638_836064_+	NA	NA|168aa|up_5|NZ_CP034089.1_836139_836643_-	NA	NA|408aa|up_4|NZ_CP034089.1_836903_838127_+	pfam13412, HTH_24, Winged helix-turn-helix DNA-binding	NA|394aa|up_3|NZ_CP034089.1_838177_839359_+	pfam10935, DUF2637, Protein of unknown function (DUF2637)	NA|326aa|up_2|NZ_CP034089.1_839361_840339_+	NA	NA|157aa|up_1|NZ_CP034089.1_840335_840806_+	NA	NA|73aa|up_0|NZ_CP034089.1_840831_841050_+	NA	NA|291aa|down_0|NZ_CP034089.1_842753_843626_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|140aa|down_1|NZ_CP034089.1_843788_844208_+	NA	NA|162aa|down_2|NZ_CP034089.1_844309_844795_-	NA	NA|133aa|down_3|NZ_CP034089.1_845456_845855_+	NA	NA|97aa|down_4|NZ_CP034089.1_845851_846142_+	NA	NA|179aa|down_5|NZ_CP034089.1_846138_846675_+	NA	NA|62aa|down_6|NZ_CP034089.1_846671_846857_+	NA	NA|163aa|down_7|NZ_CP034089.1_846853_847342_+	NA	NA|327aa|down_8|NZ_CP034089.1_847363_848344_-	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|178aa|down_9|NZ_CP034089.1_848330_848864_-	NA
GCF_009728915.1_ASM972891v1	NZ_CP034089	Bifidobacterium longum strain LTBL16 chromosome, complete genome	3	2030699-2030784	3	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,casR	Orphan	GGCCCTGAGCGTGCGGGCGCGGA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,casR	NA|116aa|up_8|NZ_CP034089.1_2020415_2020763_+,NA|30aa|up_5|NZ_CP034089.1_2022787_2022877_-,NA|193aa|up_4|NZ_CP034089.1_2023068_2023647_-,NA|274aa|down_1|NZ_CP034089.1_2032771_2033593_+	NA|545aa|up_9|NZ_CP034089.1_2018594_2020229_+	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|116aa|up_8|NZ_CP034089.1_2020415_2020763_+	NA	NA|347aa|up_7|NZ_CP034089.1_2020765_2021806_+	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|233aa|up_6|NZ_CP034089.1_2021936_2022635_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|30aa|up_5|NZ_CP034089.1_2022787_2022877_-	NA	NA|193aa|up_4|NZ_CP034089.1_2023068_2023647_-	NA	NA|513aa|up_3|NZ_CP034089.1_2023828_2025367_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|375aa|up_2|NZ_CP034089.1_2025381_2026506_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|388aa|up_1|NZ_CP034089.1_2026603_2027767_-	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|158aa|up_0|NZ_CP034089.1_2027768_2028242_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|356aa|down_0|NZ_CP034089.1_2031589_2032657_-	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|274aa|down_1|NZ_CP034089.1_2032771_2033593_+	NA	NA|348aa|down_2|NZ_CP034089.1_2033633_2034677_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|523aa|down_3|NZ_CP034089.1_2035209_2036778_-	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|267aa|down_4|NZ_CP034089.1_2037587_2038388_-	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|727aa|down_5|NZ_CP034089.1_2038594_2040775_-	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2	NA|304aa|down_6|NZ_CP034089.1_2040996_2041908_+	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E	NA|181aa|down_7|NZ_CP034089.1_2041989_2042532_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|332aa|down_8|NZ_CP034089.1_2042631_2043627_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|133aa|down_9|NZ_CP034089.1_2043707_2044106_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated
GCF_009728915.1_ASM972891v1	NZ_CP034089	Bifidobacterium longum strain LTBL16 chromosome, complete genome	4	2172883-2172956	4	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,casR	Orphan	AAATGACGAACCGGGACAGCGAA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,casR	NA|59aa|up_0|NZ_CP034089.1_2171863_2172040_+,NA	NA|378aa|up_9|NZ_CP034089.1_2159523_2160657_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|up_8|NZ_CP034089.1_2160657_2162349_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|83aa|up_7|NZ_CP034089.1_2162417_2162666_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|up_6|NZ_CP034089.1_2162688_2162997_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1015aa|up_5|NZ_CP034089.1_2163148_2166193_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family	NA|425aa|up_4|NZ_CP034089.1_2166529_2167804_-	cd05647, M20_DapE_actinobac, M20 Peptidase actinobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase	NA|315aa|up_3|NZ_CP034089.1_2167841_2168786_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|483aa|up_2|NZ_CP034089.1_2168961_2170410_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|up_1|NZ_CP034089.1_2170406_2171393_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|59aa|up_0|NZ_CP034089.1_2171863_2172040_+	NA	NA|485aa|down_0|NZ_CP034089.1_2173035_2174490_-	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|371aa|down_1|NZ_CP034089.1_2174626_2175739_-	PRK01212, PRK01212, homoserine kinase; Provisional	NA|439aa|down_2|NZ_CP034089.1_2175833_2177150_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|531aa|down_3|NZ_CP034089.1_2177310_2178903_-	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|621aa|down_4|NZ_CP034089.1_2178905_2180768_-	COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	NA|222aa|down_5|NZ_CP034089.1_2180981_2181647_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|422aa|down_6|NZ_CP034089.1_2181655_2182921_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|311aa|down_7|NZ_CP034089.1_2183007_2183940_+	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|418aa|down_8|NZ_CP034089.1_2184033_2185287_+	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|442aa|down_9|NZ_CP034089.1_2185332_2186658_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
