assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009728875.1_ASM972887v1	NZ_CP033384	Salmonella enterica subsp. enterica strain CFSA300 chromosome, complete genome	1	586536-586636	1	CRISPRCasFinder	no		cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Orphan	GCTTCAGTGGCGAGCGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA|177aa|down_1|NZ_CP033384.1_588154_588685_-	NA|448aa|up_9|NZ_CP033384.1_572613_573957_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP033384.1_574584_575037_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP033384.1_575064_576567_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP033384.1_576591_579270_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP033384.1_579491_579893_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP033384.1_579892_580837_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP033384.1_580987_581257_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP033384.1_581498_583634_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP033384.1_583743_584628_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP033384.1_584733_584814_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP033384.1_586849_588094_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|177aa|down_1|NZ_CP033384.1_588154_588685_-	NA	NA|240aa|down_2|NZ_CP033384.1_588843_589563_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|336aa|down_3|NZ_CP033384.1_589540_590548_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_4|NZ_CP033384.1_590725_591622_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_5|NZ_CP033384.1_591612_592608_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_6|NZ_CP033384.1_592824_593349_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_7|NZ_CP033384.1_593342_593846_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_8|NZ_CP033384.1_593832_594150_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_9|NZ_CP033384.1_594187_594631_+	PRK03467, PRK03467, hypothetical protein; Provisional
GCF_009728875.1_ASM972887v1	NZ_CP033384	Salmonella enterica subsp. enterica strain CFSA300 chromosome, complete genome	2	963803-964869	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	16,17,17	17	TypeI-E	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA	NA|179aa|up_9|NZ_CP033384.1_952346_952883_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP033384.1_952879_953350_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP033384.1_953364_953871_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP033384.1_953890_954664_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP033384.1_954676_957376_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP033384.1_957455_958043_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP033384.1_958652_959453_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP033384.1_959680_961318_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP033384.1_961400_962699_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP033384.1_962834_963506_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP033384.1_964966_965764_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP033384.1_965851_966214_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP033384.1_966637_968437_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP033384.1_968436_970149_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP033384.1_970224_970959_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP033384.1_971046_972000_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_6|NZ_CP033384.1_972380_975080_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_7|NZ_CP033384.1_975437_976973_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_8|NZ_CP033384.1_976989_977592_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|355aa|down_9|NZ_CP033384.1_977608_978673_+	pfam09344, Cas_CT1975, CT1975-like protein
GCF_009728875.1_ASM972887v1	NZ_CP033384	Salmonella enterica subsp. enterica strain CFSA300 chromosome, complete genome	3	981410-982475	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	17,17,17	17	TypeI-E	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA	NA|245aa|up_9|NZ_CP033384.1_970224_970959_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP033384.1_971046_972000_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|NZ_CP033384.1_972380_975080_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|NZ_CP033384.1_975437_976973_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_CP033384.1_976989_977592_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|355aa|up_4|NZ_CP033384.1_977608_978673_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP033384.1_978682_979408_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_CP033384.1_979407_980112_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP033384.1_980111_981029_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP033384.1_981031_981325_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP033384.1_982489_983536_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP033384.1_983786_984695_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP033384.1_984704_986144_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP033384.1_986130_986736_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP033384.1_986753_987110_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP033384.1_987300_987612_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP033384.1_987630_988341_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP033384.1_988340_988820_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP033384.1_988816_989866_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP033384.1_989846_990608_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_009728875.1_ASM972887v1	NZ_CP033383	Salmonella enterica subsp. enterica strain CFSA300 plasmid pCFSA300-2, complete sequence	1	7323-7442	1	CRISPRCasFinder	no	csa3	csa3	Type I-A	TGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA|60aa|up_8|NZ_CP033383.1_265_445_+,NA|118aa|up_3|NZ_CP033383.1_4427_4781_-,NA|149aa|up_2|NZ_CP033383.1_4917_5364_-,NA|63aa|down_3|NZ_CP033383.1_10532_10721_-	NA|NA	NA	NA|60aa|up_8|NZ_CP033383.1_265_445_+	NA	NA|215aa|up_7|NZ_CP033383.1_560_1205_-	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme	NA|207aa|up_6|NZ_CP033383.1_1499_2120_+	cd02042, ParAB_family, partition proteins ParAB family	NA|77aa|up_5|NZ_CP033383.1_2171_2402_+	pfam09274, ParG, ParG	NA|355aa|up_4|NZ_CP033383.1_2825_3890_+	pfam13614, AAA_31, AAA domain	NA|118aa|up_3|NZ_CP033383.1_4427_4781_-	NA	NA|149aa|up_2|NZ_CP033383.1_4917_5364_-	NA	NA|281aa|up_1|NZ_CP033383.1_5367_6210_-	pfam01051, Rep_3, Initiator Replication protein	NA|280aa|up_0|NZ_CP033383.1_6230_7070_-	pfam01051, Rep_3, Initiator Replication protein	NA|84aa|down_0|NZ_CP033383.1_8304_8556_+	PRK02854, PRK02854, primosomal protein DnaT	NA|94aa|down_1|NZ_CP033383.1_8545_8827_+	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|400aa|down_2|NZ_CP033383.1_9323_10523_-	pfam04986, Y2_Tnp, Putative transposase	NA|63aa|down_3|NZ_CP033383.1_10532_10721_-	NA	NA|265aa|down_4|NZ_CP033383.1_12299_13094_+	cd05150, APH, Aminoglycoside 3'-phosphotransferase	NA|235aa|down_5|NZ_CP033383.1_13400_14105_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|195aa|down_6|NZ_CP033383.1_14511_15096_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|413aa|down_7|NZ_CP033383.1_15095_16334_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|302aa|down_8|NZ_CP033383.1_16330_17236_-	cd05152, MPH2', Macrolide 2'-Phosphotransferase	NA|235aa|down_9|NZ_CP033383.1_17357_18062_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
