assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009728755.1_ASM972875v1	NZ_CP033112	Staphylococcus aureus strain ST20130944 chromosome, complete genome	1	808981-809065	1	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,DinG,WYL	Unclear	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	809007-809039|809007-809039	NZ_CP033112.1_1043940-1043972|NZ_CP033112.1_2453416-2453384	NA	1	1	Unclear	cas3,csa3,DEDDh,DinG,WYL	NA|33aa|up_1|NZ_CP033112.1_807421_807520_+,NA	NA|357aa|up_9|NZ_CP033112.1_797430_798501_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|352aa|up_8|NZ_CP033112.1_798818_799874_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|214aa|up_7|NZ_CP033112.1_800037_800679_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|289aa|up_6|NZ_CP033112.1_800822_801689_+	TIGR00762, DegV, EDD domain protein, DegV family	cas3|361aa|up_5|NZ_CP033112.1_802052_803135_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|225aa|up_4|NZ_CP033112.1_803127_803802_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_3|NZ_CP033112.1_803862_804435_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_2|NZ_CP033112.1_804848_807380_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|33aa|up_1|NZ_CP033112.1_807421_807520_+	NA	NA|370aa|up_0|NZ_CP033112.1_807694_808805_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|523aa|down_0|NZ_CP033112.1_809242_810810_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|280aa|down_1|NZ_CP033112.1_811236_812076_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|down_2|NZ_CP033112.1_812249_812900_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|down_3|NZ_CP033112.1_812896_813133_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|down_4|NZ_CP033112.1_813401_815387_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|down_5|NZ_CP033112.1_815394_818241_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_6|NZ_CP033112.1_818851_819784_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|281aa|down_7|NZ_CP033112.1_819789_820632_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_8|NZ_CP033112.1_820639_821125_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_9|NZ_CP033112.1_821132_822572_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs
GCF_009728755.1_ASM972875v1	NZ_CP033112	Staphylococcus aureus strain ST20130944 chromosome, complete genome	2	869048-869127	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCGTCAGCTTCTGTGTTGGGGCCC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|187aa|up_9|NZ_CP033112.1_862022_862583_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP033112.1_862655_863273_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP033112.1_863428_863923_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP033112.1_864321_864744_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP033112.1_864891_865608_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP033112.1_865690_866230_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP033112.1_866379_866700_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP033112.1_866843_867200_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP033112.1_867357_867738_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP033112.1_867915_868794_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP033112.1_869384_869771_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP033112.1_869763_870060_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP033112.1_870309_871335_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP033112.1_871327_872023_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP033112.1_872040_872862_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP033112.1_873676_873871_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP033112.1_874104_874956_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP033112.1_875283_876045_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP033112.1_876142_877450_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP033112.1_877564_878806_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_009728755.1_ASM972875v1	NZ_CP033112	Staphylococcus aureus strain ST20130944 chromosome, complete genome	3	918168-918253	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	2	918198-918223|918198-918223	NZ_CP033112.1_2194915-2194940|NZ_CP033112.1_2254998-2255023	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|499aa|up_9|NZ_CP033112.1_907057_908554_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP033112.1_908546_908876_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP033112.1_908887_909316_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP033112.1_909308_911714_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP033112.1_911844_912228_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP033112.1_912291_912885_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP033112.1_913299_913677_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP033112.1_914038_915166_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP033112.1_915473_916664_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP033112.1_916772_918017_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|460aa|down_0|NZ_CP033112.1_919580_920960_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_1|NZ_CP033112.1_920949_922155_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_2|NZ_CP033112.1_922505_923837_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_3|NZ_CP033112.1_924162_924738_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_4|NZ_CP033112.1_924742_925267_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_5|NZ_CP033112.1_925282_925858_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_6|NZ_CP033112.1_926017_929494_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_7|NZ_CP033112.1_929494_933148_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_8|NZ_CP033112.1_933313_934216_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|130aa|down_9|NZ_CP033112.1_934541_934931_+	PRK13673, PRK13673, hypothetical protein; Provisional
GCF_009728755.1_ASM972875v1	NZ_CP033112	Staphylococcus aureus strain ST20130944 chromosome, complete genome	4	1219296-1219388	4	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,DinG,WYL	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|215aa|up_9|NZ_CP033112.1_1209170_1209815_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NZ_CP033112.1_1209821_1210463_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NZ_CP033112.1_1210843_1211032_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NZ_CP033112.1_1211474_1211849_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NZ_CP033112.1_1211863_1213510_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NZ_CP033112.1_1213699_1215760_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NZ_CP033112.1_1215962_1216535_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NZ_CP033112.1_1216539_1217526_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NZ_CP033112.1_1217518_1218445_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NZ_CP033112.1_1218437_1219172_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NZ_CP033112.1_1219477_1219711_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NZ_CP033112.1_1219826_1220558_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NZ_CP033112.1_1220704_1224271_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NZ_CP033112.1_1224270_1225521_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NZ_CP033112.1_1225507_1225840_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NZ_CP033112.1_1225865_1227233_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NZ_CP033112.1_1227667_1227943_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NZ_CP033112.1_1228130_1228634_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NZ_CP033112.1_1228633_1229371_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NZ_CP033112.1_1229473_1229824_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_009728755.1_ASM972875v1	NZ_CP033112	Staphylococcus aureus strain ST20130944 chromosome, complete genome	5	2015202-2015329	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|132aa|up_7|NZ_CP033112.1_2007361_2007757_-,NA|51aa|up_6|NZ_CP033112.1_2008357_2008510_-,NA	NA|274aa|up_9|NZ_CP033112.1_2004503_2005325_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|NZ_CP033112.1_2005780_2007166_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|NZ_CP033112.1_2007361_2007757_-	NA	NA|51aa|up_6|NZ_CP033112.1_2008357_2008510_-	NA	NA|200aa|up_5|NZ_CP033112.1_2008534_2009134_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|NZ_CP033112.1_2009292_2009763_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_3|NZ_CP033112.1_2009767_2010910_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|NZ_CP033112.1_2011045_2011774_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|NZ_CP033112.1_2011760_2013218_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|NZ_CP033112.1_2013476_2014538_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|NZ_CP033112.1_2023350_2023797_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP033112.1_2023893_2024844_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NZ_CP033112.1_2024849_2025305_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NZ_CP033112.1_2025385_2026675_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NZ_CP033112.1_2026967_2028062_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|NZ_CP033112.1_2028252_2029989_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|NZ_CP033112.1_2030279_2030822_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|NZ_CP033112.1_2031124_2032162_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|NZ_CP033112.1_2032313_2033291_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|279aa|down_9|NZ_CP033112.1_2033551_2034388_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCF_009728755.1_ASM972875v1	NZ_CP033112	Staphylococcus aureus strain ST20130944 chromosome, complete genome	6	2060118-2060309	1	CRT	no	DEDDh	cas3,csa3,DEDDh,DinG,WYL	Unclear	NNTCTNTGTTGGGGCCCNCACC	22	2	9	2060139-2060175|2060197-2060230|2060197-2060230|2060197-2060230|2060197-2060230|2060197-2060230|2060197-2060230|2060197-2060230|2060197-2060230	NZ_CP033112.1_823936-823972|NZ_CP033112.1_256463-256430|NZ_CP033112.1_331164-331131|NZ_CP033112.1_775875-775842|NZ_CP033112.1_809046-809079|NZ_CP033112.1_1070097-1070130|NZ_CP033112.1_1823879-1823846|NZ_CP033112.1_2419096-2419129|NZ_CP033112.1_2561169-2561136	NA	3	3	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|37aa|up_9|NZ_CP033112.1_2051523_2051634_-,NA|31aa|up_5|NZ_CP033112.1_2054639_2054732_-,NA|49aa|down_0|NZ_CP033112.1_2060613_2060760_-	NA|37aa|up_9|NZ_CP033112.1_2051523_2051634_-	NA	NA|244aa|up_8|NZ_CP033112.1_2051719_2052451_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|up_7|NZ_CP033112.1_2052452_2053766_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|up_6|NZ_CP033112.1_2054057_2054558_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|up_5|NZ_CP033112.1_2054639_2054732_-	NA	DEDDh|185aa|up_4|NZ_CP033112.1_2054948_2055503_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|up_3|NZ_CP033112.1_2055569_2056640_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|up_2|NZ_CP033112.1_2056886_2057417_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|up_1|NZ_CP033112.1_2057586_2058948_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|316aa|up_0|NZ_CP033112.1_2059028_2059976_-	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|49aa|down_0|NZ_CP033112.1_2060613_2060760_-	NA	NA|476aa|down_1|NZ_CP033112.1_2060798_2062226_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|486aa|down_2|NZ_CP033112.1_2062238_2063696_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|101aa|down_3|NZ_CP033112.1_2063697_2064000_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|513aa|down_4|NZ_CP033112.1_2064366_2065905_+	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|400aa|down_5|NZ_CP033112.1_2065993_2067193_-	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only]	NA|668aa|down_6|NZ_CP033112.1_2067205_2069209_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|731aa|down_7|NZ_CP033112.1_2069212_2071405_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|231aa|down_8|NZ_CP033112.1_2071401_2072094_-	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	NA|101aa|down_9|NZ_CP033112.1_2072276_2072579_-	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_009728755.1_ASM972875v1	NZ_CP033112	Staphylococcus aureus strain ST20130944 chromosome, complete genome	7	2170873-2170961	6	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|127aa|up_8|NZ_CP033112.1_2165923_2166304_-,NA|128aa|up_4|NZ_CP033112.1_2169589_2169973_-,NA|68aa|up_3|NZ_CP033112.1_2169974_2170178_-,NA|52aa|up_2|NZ_CP033112.1_2170162_2170318_-,NA	NA|214aa|up_9|NZ_CP033112.1_2165285_2165927_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|127aa|up_8|NZ_CP033112.1_2165923_2166304_-	NA	NA|570aa|up_7|NZ_CP033112.1_2166615_2168325_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|290aa|up_6|NZ_CP033112.1_2168338_2169208_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|106aa|up_5|NZ_CP033112.1_2169271_2169589_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|128aa|up_4|NZ_CP033112.1_2169589_2169973_-	NA	NA|68aa|up_3|NZ_CP033112.1_2169974_2170178_-	NA	NA|52aa|up_2|NZ_CP033112.1_2170162_2170318_-	NA	NA|106aa|up_1|NZ_CP033112.1_2170314_2170632_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|NZ_CP033112.1_2170636_2170855_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|NZ_CP033112.1_2171027_2171702_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|NZ_CP033112.1_2171715_2172888_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|NZ_CP033112.1_2172956_2174573_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|NZ_CP033112.1_2174648_2174933_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|NZ_CP033112.1_2175107_2175851_+	pfam02517, Abi, CAAX protease self-immunity	NA|405aa|down_5|NZ_CP033112.1_2175875_2177090_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_6|NZ_CP033112.1_2177286_2177913_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_7|NZ_CP033112.1_2178273_2179059_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_8|NZ_CP033112.1_2179661_2179796_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_9|NZ_CP033112.1_2180031_2180595_+	smart00793, AgrB, Accessory gene regulator B
GCF_009728755.1_ASM972875v1	NZ_CP033112	Staphylococcus aureus strain ST20130944 chromosome, complete genome	8	2320658-2320859	1	PILER-CR	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TCCTTGGTTGGCAGGTGCAGCTGGATGTGCTGTA	34	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|35aa|up_8|NZ_CP033112.1_2302074_2302179_-,NA|53aa|up_7|NZ_CP033112.1_2302858_2303017_+,NA	NA|549aa|up_9|NZ_CP033112.1_2300002_2301649_+	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|35aa|up_8|NZ_CP033112.1_2302074_2302179_-	NA	NA|53aa|up_7|NZ_CP033112.1_2302858_2303017_+	NA	NA|286aa|up_6|NZ_CP033112.1_2303675_2304533_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP033112.1_2304600_2305383_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP033112.1_2305614_2307420_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP033112.1_2308100_2309639_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP033112.1_2309673_2311806_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP033112.1_2311817_2312252_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP033112.1_2312251_2313358_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP033112.1_2321347_2322703_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP033112.1_2322729_2323662_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP033112.1_2323663_2324473_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP033112.1_2324662_2325571_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP033112.1_2331788_2332853_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|158aa|down_5|NZ_CP033112.1_2334632_2335106_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_6|NZ_CP033112.1_2335227_2336571_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_7|NZ_CP033112.1_2336748_2337432_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_8|NZ_CP033112.1_2337450_2338638_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|172aa|down_9|NZ_CP033112.1_2338681_2339197_-	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase
GCF_009728755.1_ASM972875v1	NZ_CP033112	Staphylococcus aureus strain ST20130944 chromosome, complete genome	9	2379125-2379250	7	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|56aa|up_8|NZ_CP033112.1_2369598_2369766_+,NA|61aa|up_1|NZ_CP033112.1_2378114_2378297_-,NA	NA|139aa|up_9|NZ_CP033112.1_2368939_2369356_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|56aa|up_8|NZ_CP033112.1_2369598_2369766_+	NA	NA|809aa|up_7|NZ_CP033112.1_2369762_2372189_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_6|NZ_CP033112.1_2372248_2373103_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|272aa|up_5|NZ_CP033112.1_2373313_2374129_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|NZ_CP033112.1_2374423_2374849_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|NZ_CP033112.1_2375239_2375944_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|NZ_CP033112.1_2375980_2377645_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|61aa|up_1|NZ_CP033112.1_2378114_2378297_-	NA	NA|60aa|up_0|NZ_CP033112.1_2378879_2379059_-	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|479aa|down_0|NZ_CP033112.1_2379307_2380744_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|133aa|down_1|NZ_CP033112.1_2381092_2381491_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_2|NZ_CP033112.1_2381504_2381942_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|265aa|down_3|NZ_CP033112.1_2382190_2382985_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_4|NZ_CP033112.1_2382989_2383796_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_5|NZ_CP033112.1_2383785_2384646_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_6|NZ_CP033112.1_2384642_2385452_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|523aa|down_7|NZ_CP033112.1_2385827_2387395_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|123aa|down_8|NZ_CP033112.1_2387647_2388016_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_9|NZ_CP033112.1_2388032_2388977_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional
GCF_009728755.1_ASM972875v1	NZ_CP033112	Staphylococcus aureus strain ST20130944 chromosome, complete genome	10	2419132-2419212	8	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	6	2419157-2419187|2419157-2419187|2419157-2419187|2419157-2419187|2419157-2419187|2419157-2419187	NZ_CP033112.1_1070160-1070190|NZ_CP033112.1_1703938-1703968|NZ_CP033112.1_824060-824090|NZ_CP033112.1_2049581-2049611|NZ_CP033112.1_873359-873329|NZ_CP033112.1_918189-918159	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|55aa|up_9|NZ_CP033112.1_2409661_2409826_+,NA|106aa|up_8|NZ_CP033112.1_2410070_2410388_+,NA|84aa|up_5|NZ_CP033112.1_2415512_2415764_+,NA|57aa|up_0|NZ_CP033112.1_2418904_2419075_+,NA	NA|55aa|up_9|NZ_CP033112.1_2409661_2409826_+	NA	NA|106aa|up_8|NZ_CP033112.1_2410070_2410388_+	NA	NA|1056aa|up_7|NZ_CP033112.1_2410574_2413742_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP033112.1_2413858_2415124_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP033112.1_2415512_2415764_+	NA	NA|255aa|up_4|NZ_CP033112.1_2415755_2416520_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP033112.1_2416682_2417123_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP033112.1_2417115_2418327_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP033112.1_2418428_2418779_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP033112.1_2418904_2419075_+	NA	NA|341aa|down_0|NZ_CP033112.1_2419355_2420378_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP033112.1_2420397_2420997_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP033112.1_2421003_2421237_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP033112.1_2421242_2421689_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP033112.1_2421702_2422188_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP033112.1_2422184_2423444_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP033112.1_2423506_2424001_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP033112.1_2424002_2424509_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP033112.1_2424537_2425542_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP033112.1_2425709_2426315_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
