assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009728585.1_ASM972858v1	NZ_CP040451	Halomonas sp. PA16-9 chromosome, complete genome	1	106880-106971	1	CRISPRCasFinder	no		cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,RT,DinG,csa3,WYL	Orphan	TCCGTTTGACTAATATTTAACTG	23	0	0	NA	NA	NA	1	1	Orphan	cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,RT,DinG,csa3,WYL,cas3	NA,NA	NA|424aa|up_9|NZ_CP040451.1_92204_93476_+	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|253aa|up_8|NZ_CP040451.1_93507_94266_+	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|261aa|up_7|NZ_CP040451.1_94316_95099_+	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|230aa|up_6|NZ_CP040451.1_95136_95826_+	PRK00249, flgH, flagellar basal body L-ring protein FlgH	NA|382aa|up_5|NZ_CP040451.1_95916_97062_+	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|344aa|up_4|NZ_CP040451.1_97061_98093_+	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ	NA|648aa|up_3|NZ_CP040451.1_98166_100110_+	PRK06945, flgK, flagellar hook-associated protein FlgK; Validated	NA|90aa|up_2|NZ_CP040451.1_102265_102535_-	PRK05700, fliQ, flagellar type III secretion system protein FliQ	NA|245aa|up_1|NZ_CP040451.1_102580_103315_-	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|147aa|up_0|NZ_CP040451.1_103374_103815_-	pfam04347, FliO, Flagellar biosynthesis protein, FliO	NA|151aa|down_0|NZ_CP040451.1_107617_108070_-	PRK05689, fliJ, flagella biosynthesis chaperone FliJ	NA|467aa|down_1|NZ_CP040451.1_108066_109467_-	TIGR03496, FliI_clade1, flagellar protein export ATPase FliI	NA|597aa|down_2|NZ_CP040451.1_111234_113025_-	PRK06007, fliF, flagellar basal body M-ring protein FliF	NA|112aa|down_3|NZ_CP040451.1_113280_113616_+	PRK00253, fliE, flagellar hook-basal body protein FliE; Reviewed	NA|122aa|down_4|NZ_CP040451.1_113634_114000_-	pfam03646, FlaG, FlaG protein	NA|139aa|down_5|NZ_CP040451.1_116215_116632_+	PRK05685, fliS, flagellar export chaperone FliS	NA|137aa|down_6|NZ_CP040451.1_116639_117050_+	PRK10548, PRK10548, flagella biosynthesis regulatory protein FliT	NA|360aa|down_7|NZ_CP040451.1_117382_118462_+	pfam02120, Flg_hook, Flagellar hook-length control protein FliK	NA|98aa|down_8|NZ_CP040451.1_118445_118739_+	COG2257, COG2257, Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]	NA|111aa|down_9|NZ_CP040451.1_118845_119178_+	pfam05247, FlhD, Flagellar transcriptional activator (FlhD)
GCF_009728585.1_ASM972858v1	NZ_CP040451	Halomonas sp. PA16-9 chromosome, complete genome	2	257794-262871	1,2,1,2,3,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,CRISPRCasFinder,PILER-CR	no	cse2gr11,cas7,cas5,cas6e,cas1,cas2	cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,RT,DinG,csa3,WYL	Type I-E	CCGATCCCCGCACGGGCGGGGATGAACCG,CCGATCCCCGCACGGGCGGGGATGAACCG,CCGATCCCCGCACGGGCGGGGATGAACCG,CCGATCCCCGCACGGGCGGGGATGAACCG,CCGATCCCCGCACGGGCGGGGATGAACCG,CCGATCCCCGCACGGGCGGGGATGAACCG	29,29,29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E:I-E	77,81,83,77,81,77	83	TypeI-E	cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,RT,DinG,csa3,WYL,cas3	NA|232aa|up_7|NZ_CP040451.1_246954_247650_-,NA|103aa|down_2|NZ_CP040451.1_265663_265972_-,NA|58aa|down_7|NZ_CP040451.1_274401_274575_-	NA|292aa|up_9|NZ_CP040451.1_243017_243893_+	cd08484, PBP2_LTTR_beta_lactamase, The C-terminal substrate-domain of LysR-type transcriptional regulators for beta-lactamase genes, contains the type 2 periplasmic binding fold	NA|245aa|up_8|NZ_CP040451.1_245918_246653_-	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters	NA|232aa|up_7|NZ_CP040451.1_246954_247650_-	NA	NA|144aa|up_6|NZ_CP040451.1_250489_250921_-	pfam01724, DUF29, Domain of unknown function DUF29	cse2gr11|222aa|up_5|NZ_CP040451.1_253190_253856_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP040451.1_253916_255008_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|251aa|up_3|NZ_CP040451.1_255017_255770_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|230aa|up_2|NZ_CP040451.1_255769_256459_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|307aa|up_1|NZ_CP040451.1_256468_257389_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP040451.1_257389_257683_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|406aa|down_0|NZ_CP040451.1_263300_264518_+	pfam05987, DUF898, Bacterial protein of unknown function (DUF898)	NA|368aa|down_1|NZ_CP040451.1_264517_265621_+	cd07332, M48C_Oma1_like, Peptidase M48C Ste24p, integral membrane endopeptidase	NA|103aa|down_2|NZ_CP040451.1_265663_265972_-	NA	NA|323aa|down_3|NZ_CP040451.1_266038_267007_-	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]	NA|469aa|down_4|NZ_CP040451.1_269389_270796_+	PRK09469, glnA, glutamate--ammonia ligase	NA|353aa|down_5|NZ_CP040451.1_271592_272651_+	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]	NA|476aa|down_6|NZ_CP040451.1_272647_274075_+	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I)	NA|58aa|down_7|NZ_CP040451.1_274401_274575_-	NA	NA|176aa|down_8|NZ_CP040451.1_274663_275191_-	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|44aa|down_9|NZ_CP040451.1_275196_275328_-	COG5510, COG5510, Predicted small secreted protein [Function unknown]
GCF_009728585.1_ASM972858v1	NZ_CP040451	Halomonas sp. PA16-9 chromosome, complete genome	3	1729149-1729311	4	CRISPRCasFinder	no	RT	cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,RT,DinG,csa3,WYL	Unclear	AGGCTTACCACGCGCTACTAAATCACGCATGCATAGAACATGGTGGAAGCAC	52	0	0	NA	NA	NA	1	1	Orphan	cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,RT,DinG,csa3,WYL,cas3	NA,NA	NA|267aa|up_9|NZ_CP040451.1_1715185_1715986_-	COG3332, COG3332, Uncharacterized conserved protein [Function unknown]	NA|266aa|up_8|NZ_CP040451.1_1717393_1718191_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|265aa|up_7|NZ_CP040451.1_1718258_1719053_+	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed	NA|186aa|up_6|NZ_CP040451.1_1720256_1720814_+	pfam00186, DHFR_1, Dihydrofolate reductase	NA|279aa|up_5|NZ_CP040451.1_1720834_1721671_+	pfam04352, ProQ, ProQ/FINO family	NA|342aa|up_4|NZ_CP040451.1_1723244_1724270_+	COG3203, OmpC, Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]	NA|136aa|up_3|NZ_CP040451.1_1724541_1724949_+	pfam16587, DUF5061, 17 kDa common-antigen outer membrane protein	NA|577aa|up_2|NZ_CP040451.1_1724948_1726679_+	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains    SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]	NA|271aa|up_1|NZ_CP040451.1_1726818_1727631_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|64aa|up_0|NZ_CP040451.1_1728911_1729103_+	pfam10049, DUF2283, Protein of unknown function (DUF2283)	NA|297aa|down_0|NZ_CP040451.1_1731060_1731951_+	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system	NA|414aa|down_1|NZ_CP040451.1_1731980_1733222_+	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional	NA|118aa|down_2|NZ_CP040451.1_1733265_1733619_+	cd16377, 23S_rRNA_IVP_like, 23S rRNA-intervening sequence protein and similar proteins	NA|319aa|down_3|NZ_CP040451.1_1733615_1734572_+	pfam04321, RmlD_sub_bind, RmlD substrate binding domain	NA|183aa|down_4|NZ_CP040451.1_1735643_1736192_+	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase	NA|1344aa|down_5|NZ_CP040451.1_1736233_1740265_+	cd03823, GT4_ExpE7-like, glycosyltransferase ExpE7 and similar proteins	NA|857aa|down_6|NZ_CP040451.1_1740266_1742837_+	pfam03567, Sulfotransfer_2, Sulfotransferase family	NA|278aa|down_7|NZ_CP040451.1_1742833_1743667_+	pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase	RT|435aa|down_8|NZ_CP040451.1_1743747_1745052_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|129aa|down_9|NZ_CP040451.1_1745861_1746248_+	cd08946, SDR_e, extended (e) SDRs
GCF_009728585.1_ASM972858v1	NZ_CP040453	Halomonas sp. PA16-9 plasmid p_unnamed2, complete sequence	1	54935-55134	1	CRISPRCasFinder	no		RT	Orphan	GGTGCAGGTGAAAGCACGTGCCCGTGAGGTGGCATCCCTGAAACCACG	48	0	0	NA	NA	NA	1	1	Orphan	cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,RT,DinG,csa3,WYL,cas3	NA|157aa|up_9|NZ_CP040453.1_49403_49874_+,NA|96aa|up_8|NZ_CP040453.1_49861_50149_+,NA|100aa|up_6|NZ_CP040453.1_51269_51569_+,NA|135aa|up_5|NZ_CP040453.1_51540_51945_+,NA|103aa|up_3|NZ_CP040453.1_52442_52751_+,NA|190aa|up_2|NZ_CP040453.1_52790_53360_+,NA|172aa|up_1|NZ_CP040453.1_53552_54068_+,NA|76aa|down_1|NZ_CP040453.1_57296_57524_-,NA|93aa|down_2|NZ_CP040453.1_57762_58041_+,NA|63aa|down_4|NZ_CP040453.1_58419_58608_+	NA|157aa|up_9|NZ_CP040453.1_49403_49874_+	NA	NA|96aa|up_8|NZ_CP040453.1_49861_50149_+	NA	NA|344aa|up_7|NZ_CP040453.1_50226_51258_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|100aa|up_6|NZ_CP040453.1_51269_51569_+	NA	NA|135aa|up_5|NZ_CP040453.1_51540_51945_+	NA	NA|147aa|up_4|NZ_CP040453.1_51992_52433_+	pfam14354, Lar_restr_allev, Restriction alleviation protein Lar	NA|103aa|up_3|NZ_CP040453.1_52442_52751_+	NA	NA|190aa|up_2|NZ_CP040453.1_52790_53360_+	NA	NA|172aa|up_1|NZ_CP040453.1_53552_54068_+	NA	NA|138aa|up_0|NZ_CP040453.1_54132_54546_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|628aa|down_0|NZ_CP040453.1_55348_57232_-	PRK06850, PRK06850, hypothetical protein; Provisional	NA|76aa|down_1|NZ_CP040453.1_57296_57524_-	NA	NA|93aa|down_2|NZ_CP040453.1_57762_58041_+	NA	NA|88aa|down_3|NZ_CP040453.1_58108_58372_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|63aa|down_4|NZ_CP040453.1_58419_58608_+	NA	NA|367aa|down_5|NZ_CP040453.1_58622_59723_+	pfam01025, GrpE, GrpE	NA|151aa|down_6|NZ_CP040453.1_59835_60288_+	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family	NA|155aa|down_7|NZ_CP040453.1_60284_60749_+	pfam08808, RES, RES domain	NA|164aa|down_8|NZ_CP040453.1_60860_61352_+	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|426aa|down_9|NZ_CP040453.1_61348_62626_+	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V
