The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP046246	Tetragenococcus halophilus strain YJ1 chromosome, complete genome	2476596	368313	436089	2476596	integrase,protease,transposase	Staphylococcus_phage(23.53%)	58	383594:383611	418087:418104
WP_155224207.1|368313_369420_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_094243521.1|369571_370177_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
WP_094243520.1|370166_371309_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
WP_155224208.1|373769_374696_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_014124933.1|374909_375677_-	pyruvate formate lyase-activating protein	NA	NA	NA	NA	NA
WP_155224209.1|375832_378115_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	41.4	6.7e-167
WP_155224210.1|378450_380898_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	33.4	3.2e-98
WP_155224211.1|380933_382931_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	41.3	8.0e-116
WP_014124937.1|383143_383572_-	CoA-binding protein	NA	NA	NA	NA	NA
383594:383611	attL	ATTTATTATTTCATTTGC	NA	NA	NA	NA
WP_094243515.1|383689_384325_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_155224212.1|384367_385243_-	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_103097176.1|385269_386055_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_155224213.1|386096_387503_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A173GFL6	Erwinia_phage	28.5	1.3e-40
WP_014124942.1|387507_388053_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_155224214.1|388084_388981_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	29.1	3.4e-34
WP_014124944.1|389183_391262_-	type I DNA topoisomerase	NA	A0A2K9L1Q2	Tupanvirus	38.5	8.9e-102
WP_155224215.1|391395_392274_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_155224216.1|392333_393101_-	ribonuclease HII	NA	R4THQ2	Phaeocystis_globosa_virus	37.6	1.2e-19
WP_155224217.1|393101_393950_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_061840532.1|394045_395569_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	25.1	2.2e-25
WP_002335628.1|395671_395902_-	hypothetical protein	NA	A0A1X9IGE0	Lactococcus_phage	43.2	1.2e-10
WP_002335627.1|396291_396534_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002335626.1|396520_396949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014124953.1|399592_400630_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_014124954.1|400655_401594_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_061840530.1|402088_402634_-	signal peptidase I	NA	NA	NA	NA	NA
WP_155224218.1|402659_404072_-	PDZ domain-containing protein	NA	A0A0R6PIZ1	Moraxella_phage	29.0	7.3e-23
WP_014124957.1|404099_404321_-	YozE family protein	NA	NA	NA	NA	NA
WP_014124958.1|404317_404833_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_094244167.1|404843_405491_-	YpmS family protein	NA	NA	NA	NA	NA
WP_155224219.1|405484_406375_-	lipase	NA	NA	NA	NA	NA
WP_061840526.1|406604_407453_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	38.3	8.6e-19
WP_103100151.1|407572_408640_-	iron-containing alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_155224220.1|408870_409524_+	hemolysin III family protein	NA	NA	NA	NA	NA
WP_061840523.1|409605_410055_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_061840521.1|410336_410825_-	dihydrofolate reductase	NA	A0A1L7N103	Ralstonia_phage	34.0	1.2e-20
WP_014124966.1|410841_411789_-	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	63.4	2.1e-119
WP_155224221.1|411808_413689_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.5	2.9e-51
WP_155224222.1|413899_416035_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_061840511.1|416338_417628_-	LytR family transcriptional regulator	NA	NA	NA	NA	NA
WP_061840509.1|417741_418551_-	ABC transporter permease	NA	NA	NA	NA	NA
418087:418104	attR	GCAAATGAAATAATAAAT	NA	NA	NA	NA
WP_103097188.1|418578_419637_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.0	7.2e-15
WP_155224223.1|420177_421536_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_014124972.1|421608_422004_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	37.0	2.7e-15
WP_103096907.1|422100_422583_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014124974.1|422676_423285_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	58.6	1.1e-68
WP_103083422.1|423826_424180_-	GtrA family protein	NA	NA	NA	NA	NA
WP_155224224.1|424503_425301_+	DUF1189 family protein	NA	NA	NA	NA	NA
WP_155224225.1|425379_426333_+	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_155224226.1|427358_429203_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_069028984.1|429310_429604_-	iron-sulfur cluster biosynthesis protein	NA	NA	NA	NA	NA
WP_061841155.1|429615_430281_-	TrkA family potassium uptake protein	NA	NA	NA	NA	NA
WP_061841156.1|430292_430922_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_061841157.1|430918_431998_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_014124985.1|431994_432726_-	cell wall-active antibiotics response protein	NA	NA	NA	NA	NA
WP_014124986.1|432842_433325_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_103096901.1|433463_434642_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_014123593.1|434730_436089_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP046246	Tetragenococcus halophilus strain YJ1 chromosome, complete genome	2476596	446780	512688	2476596	transposase,tRNA	Streptococcus_phage(30.77%)	48	NA	NA
WP_014124993.1|446780_447071_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_041591832.1|447067_447322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155224230.1|447707_448895_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_061841171.1|448887_449604_-	WecB/TagA/CpsF family glycosyltransferase	NA	NA	NA	NA	NA
WP_155224231.1|449611_450766_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_069028991.1|450806_452294_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_155224232.1|452482_454756_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_155224233.1|454838_456572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155224234.1|456741_457848_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_155224235.1|458206_459345_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	54.8	2.3e-75
WP_155224236.1|459606_460914_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_155224237.1|461348_463622_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_155224238.1|463705_465439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155224239.1|465776_466915_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	54.8	1.8e-75
WP_155224240.1|467121_468420_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	28.7	4.2e-33
WP_061840820.1|468985_469213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155224241.1|469531_470938_-	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA	NA
WP_103103327.1|470930_472664_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_103103326.1|472697_473723_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_103103325.1|473715_474432_-	D-ribitol-5-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_155224242.1|474647_475946_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.6	1.9e-57
WP_014125011.1|475983_477174_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_103083399.1|477201_477654_-	DUF5590 domain-containg protein	NA	NA	NA	NA	NA
WP_155224243.1|477791_480542_-	DEAD/DEAH box helicase family protein	NA	A0A0A7RWA3	Clostridium_phage	32.3	9.0e-17
WP_103097272.1|480959_481160_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	69.7	1.6e-21
WP_014125015.1|481361_482456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069028958.1|482663_484082_-|transposase	ISLre2 family transposase	transposase	NA	NA	NA	NA
WP_155224801.1|484266_485613_+	excinuclease ABC subunit A	NA	M1Q231	Streptococcus_phage	43.6	5.6e-97
WP_155224244.1|485703_487743_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	32.7	2.8e-71
WP_103091748.1|487910_488975_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_103099916.1|488977_489658_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.0	1.4e-27
WP_103100407.1|489734_490334_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_103100406.1|490413_491130_-	aquaporin family protein	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	36.2	4.1e-30
WP_155224245.1|491122_492943_-	type 1 glycerol-3-phosphate oxidase	NA	NA	NA	NA	NA
WP_103083833.1|492946_494464_-	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_155224802.1|494614_496051_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_155224246.1|496040_497357_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_155224247.1|497875_498571_+	peptidoglycan DD-metalloendopeptidase family protein	NA	V5R8R0	Arthrobacter_phage	41.4	7.6e-05
WP_094244165.1|498989_500159_+	MFS transporter	NA	A0A1B0RXA6	Streptococcus_phage	34.8	1.3e-60
WP_061840830.1|500430_500688_-	DUF3290 family protein	NA	NA	NA	NA	NA
WP_061840831.1|500775_501216_-	OsmC family protein	NA	NA	NA	NA	NA
WP_155224248.1|501456_502221_-	peptidase S66 family protein	NA	NA	NA	NA	NA
WP_094243479.1|502710_503571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155224249.1|503656_504400_-	DUF1275 family protein	NA	NA	NA	NA	NA
WP_014123848.1|504968_506075_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_155224250.1|506725_508144_-|transposase	ISLre2 family transposase	transposase	NA	NA	NA	NA
WP_014123528.1|508684_510007_+|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	41.4	2.9e-90
WP_155224251.1|511326_512688_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP046246	Tetragenococcus halophilus strain YJ1 chromosome, complete genome	2476596	657374	712423	2476596	integrase,transposase,holin	Streptococcus_phage(25.0%)	52	684500:684521	687851:687872
WP_155224281.1|657374_658625_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	57.4	2.4e-110
WP_155224282.1|659099_660209_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_155224283.1|660403_661246_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014125237.1|661627_662602_-	amidinotransferase	NA	NA	NA	NA	NA
WP_014125238.1|662685_662997_-	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_014125239.1|663028_663451_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_014125240.1|663450_663717_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_014125241.1|663940_664600_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_014125242.1|664830_666780_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	32.1	6.3e-57
WP_014125243.1|666909_668022_+	alanine dehydrogenase	NA	NA	NA	NA	NA
WP_155224284.1|668235_668616_-	glyoxalase	NA	NA	NA	NA	NA
WP_069029073.1|668854_669850_+	YhdH/YhfP family quinone oxidoreductase	NA	NA	NA	NA	NA
WP_155224285.1|669846_670593_+	phosphopantothenate--cysteine ligase	NA	NA	NA	NA	NA
WP_014125247.1|670612_671167_+	phosphopantothenoylcysteine decarboxylase	NA	Q9J5A8	Fowlpox_virus	36.9	6.8e-25
WP_014125248.1|671173_671812_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_014125249.1|671856_672195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014125250.1|672485_673478_+	ribonucleoside hydrolase	NA	NA	NA	NA	NA
WP_014125251.1|673474_674026_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_155224286.1|674156_675194_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_155224287.1|675214_676486_-	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_155224288.1|676511_676796_-	PTS galactitol transporter subunit IIB	NA	NA	NA	NA	NA
WP_155224289.1|676792_677254_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_094243418.1|677299_678289_-	transketolase	NA	NA	NA	NA	NA
WP_094243417.1|678301_679204_-	transketolase	NA	NA	NA	NA	NA
WP_155224290.1|679922_680372_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
WP_155224291.1|680739_681075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155224292.1|681290_684341_-	HsdR family type I site-specific deoxyribonuclease	NA	NA	NA	NA	NA
684500:684521	attL	ATTGGAAACAGCGTAAGTTAGG	NA	NA	NA	NA
WP_155224293.1|684525_685629_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_155224294.1|685707_686637_+|integrase	tyrosine-type recombinase/integrase	integrase	A8ATM2	Listeria_phage	48.6	3.0e-81
WP_155224295.1|686688_687927_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
687851:687872	attR	CCTAACTTACGCTGTTTCCAAT	NA	NA	NA	NA
WP_155224296.1|687919_689512_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	48.0	1.5e-120
WP_103097571.1|689697_690426_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_155224297.1|692447_693809_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_103083945.1|694233_694917_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014125273.1|694916_695759_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_103097531.1|695957_697145_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_061841382.1|697408_698740_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014125276.1|698809_699220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014125277.1|699540_699759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155224298.1|699887_700295_-	PIN domain-containing protein	NA	NA	NA	NA	NA
WP_014125279.1|700278_700575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155224299.1|700810_702172_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_155224300.1|702414_703260_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_061841094.1|703372_703942_-	methylphosphotriester-DNA--protein-cysteine methyltransferase family protein	NA	NA	NA	NA	NA
WP_155224301.1|703955_704456_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	41.7	1.9e-29
WP_155224302.1|704630_705794_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	A0A218MNE0	uncultured_virus	42.6	1.1e-80
WP_155224303.1|705878_706592_-	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
WP_155224304.1|706593_707457_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_103100126.1|707946_708888_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_155224305.1|709049_710063_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_069028782.1|710371_710515_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_094243738.1|711217_712423_-|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	43.6	1.4e-78
>prophage 4
NZ_CP046246	Tetragenococcus halophilus strain YJ1 chromosome, complete genome	2476596	993497	1101982	2476596	transposase,holin	Streptococcus_phage(31.58%)	101	NA	NA
WP_155224367.1|993497_994856_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_155224368.1|994992_996279_-	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_155224369.1|996578_997325_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_155224370.1|997384_998278_-	oxidoreductase	NA	NA	NA	NA	NA
WP_155224371.1|998302_998590_-	PTS galactitol transporter subunit IIB	NA	NA	NA	NA	NA
WP_155224372.1|998618_999941_-	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_155224373.1|999933_1000404_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_103092085.1|1001183_1002359_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_155224374.1|1002355_1002889_+	DUF4411 family protein	NA	NA	NA	NA	NA
WP_069028671.1|1003003_1003873_-	glycoside hydrolase family 25	NA	A0A222Z5F8	Bacillus_phage	27.1	9.1e-16
WP_069028670.1|1003934_1004147_-	DUF2922 domain-containing protein	NA	NA	NA	NA	NA
WP_014123817.1|1004170_1004398_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155224375.1|1004620_1004911_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_041591758.1|1005994_1006228_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_103097400.1|1006540_1007011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155224376.1|1007078_1007906_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061841113.1|1008303_1008633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061841114.1|1008638_1008917_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_155224377.1|1009165_1011061_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_155224378.1|1011153_1011420_-	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_155224379.1|1011454_1012009_-	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_103097398.1|1012413_1012647_-	toxin-antitoxin system, antitoxin component	NA	NA	NA	NA	NA
WP_103097396.1|1012740_1013685_-	acetamidase/formamidase family protein	NA	NA	NA	NA	NA
WP_014123808.1|1013814_1014006_+	addiction module toxin, HicA family	NA	NA	NA	NA	NA
WP_014123807.1|1014044_1014446_+	hypothetical protein	NA	A0A0K2CYJ8	Paenibacillus_phage	37.2	2.5e-13
WP_155224380.1|1014868_1015147_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_028790514.1|1015580_1015850_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5S8E8	Streptococcus_phage	53.9	3.0e-18
WP_028790515.1|1015846_1016080_-	toxin-antitoxin system antitoxin component	NA	NA	NA	NA	NA
WP_155224381.1|1016266_1017217_-	acetamidase	NA	NA	NA	NA	NA
WP_155224382.1|1017645_1018782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014123593.1|1018881_1020240_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_155224383.1|1020477_1022655_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_155224384.1|1022897_1024328_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_094243904.1|1025874_1026360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155224386.1|1026484_1027591_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_155224387.1|1027805_1028264_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_069028523.1|1028467_1029790_+|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	43.0	6.7e-95
WP_155224388.1|1030415_1030742_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_155224389.1|1031658_1031964_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
WP_155224390.1|1031964_1032873_-	type II CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
WP_162302199.1|1034455_1035703_-	type III-A CRISPR-associated protein Csm6	NA	NA	NA	NA	NA
WP_155224392.1|1035704_1036718_-	type III-A CRISPR-associated RAMP protein Csm5	NA	NA	NA	NA	NA
WP_155224393.1|1036735_1037632_-	type III-A CRISPR-associated RAMP protein Csm4	NA	NA	NA	NA	NA
WP_155224394.1|1037628_1038303_-	type III-A CRISPR-associated RAMP protein Csm3	NA	NA	NA	NA	NA
WP_155224395.1|1038314_1038743_-	type III-A CRISPR-associated protein Csm2	NA	NA	NA	NA	NA
WP_155224396.1|1038751_1041040_-	type III-A CRISPR-associated protein Cas10/Csm1	NA	NA	NA	NA	NA
WP_083207540.1|1041032_1041779_-	CRISPR-associated endoribonuclease Cas6	NA	NA	NA	NA	NA
WP_069028523.1|1043238_1044561_-|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	43.0	6.7e-95
WP_155224397.1|1045129_1046074_-	acetamidase	NA	NA	NA	NA	NA
WP_155224398.1|1046353_1047715_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_094243916.1|1047807_1048719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162302200.1|1048955_1050320_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_155224400.1|1050453_1051380_-	ATP-binding domain-containing protein	NA	A0A1V0SAC2	Catovirus	27.1	4.1e-06
WP_155224239.1|1051547_1052685_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	54.8	1.8e-75
WP_061841463.1|1052917_1053808_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155224401.1|1055860_1055998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155224402.1|1056086_1056830_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155224403.1|1057440_1057581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162302201.1|1057887_1058394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162302202.1|1058472_1059276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155224406.1|1060992_1062159_-	nucleotide sugar dehydrogenase	NA	A0A1J0FA55	Only_Syngen_Nebraska_virus	49.2	1.5e-98
WP_155224407.1|1062224_1063031_-	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	37.7	6.1e-14
WP_155224408.1|1063352_1064675_-|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	42.4	9.7e-94
WP_155224409.1|1064858_1065824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155224410.1|1065860_1067027_-	nucleotide sugar dehydrogenase	NA	A0A1J0FA55	Only_Syngen_Nebraska_virus	50.5	4.5e-103
WP_162302203.1|1067059_1068016_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_155224412.1|1068126_1068543_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_103100756.1|1068696_1069056_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155224413.1|1069045_1069195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162302204.1|1069287_1069437_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155224415.1|1069610_1070354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155224416.1|1070374_1071802_-	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
WP_155224417.1|1071794_1072244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155224418.1|1072304_1072748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155224419.1|1072794_1073961_-	nucleotide sugar dehydrogenase	NA	M1HZB2	Paramecium_bursaria_Chlorella_virus	50.6	1.5e-101
WP_155224407.1|1074026_1074833_-	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	37.7	6.1e-14
WP_155224420.1|1074954_1076037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155224421.1|1076159_1077176_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	53.8	2.6e-99
WP_155224422.1|1077177_1078293_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_155224423.1|1078352_1078973_-	lipid carrier--UDP-N-acetylgalactosaminyltransferase	NA	NA	NA	NA	NA
WP_155224424.1|1078962_1080084_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_155224425.1|1080076_1080718_-	sialic acid O-acetyltransferase NeuD family sugar O-acyltransferase	NA	NA	NA	NA	NA
WP_155224426.1|1080726_1082544_-	polysaccharide biosynthesis protein	NA	L7Y3T9	Megavirus	28.7	9.1e-26
WP_155224808.1|1082556_1083309_-	tyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_155224427.1|1083327_1084029_-	polysaccharide biosynthesis tyrosine autokinase	NA	NA	NA	NA	NA
WP_155224428.1|1084041_1084839_-	tyrosine protein kinase	NA	NA	NA	NA	NA
WP_155224429.1|1084853_1085786_-	transcriptional regulator	NA	A0A1X9I5X1	Streptococcus_phage	32.5	1.7e-23
WP_069028625.1|1085816_1086605_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155224408.1|1087003_1088326_-|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	42.4	9.7e-94
WP_050989746.1|1088815_1089112_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_155224430.1|1089388_1090438_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A075BS18	Microcystis_phage	49.5	3.1e-18
WP_155224431.1|1090670_1091840_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_162302228.1|1091986_1092409_-	flavodoxin	NA	NA	NA	NA	NA
WP_155224433.1|1092599_1093757_+	NAD-dependent malic enzyme	NA	NA	NA	NA	NA
WP_103083471.1|1093790_1093976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155224434.1|1093975_1094677_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_061840351.1|1095257_1096256_-	NERD domain-containing protein	NA	NA	NA	NA	NA
WP_103083474.1|1096369_1096612_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_155224809.1|1096633_1097611_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_155224435.1|1099008_1100736_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_155224436.1|1100728_1101982_-|holin	betaine/proline/choline family ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	36.9	1.8e-28
>prophage 5
NZ_CP046246	Tetragenococcus halophilus strain YJ1 chromosome, complete genome	2476596	1450123	1457865	2476596		Staphylococcus_phage(33.33%)	7	NA	NA
WP_050989791.1|1450123_1450972_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	45.9	2.1e-57
WP_061840900.1|1451316_1452123_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	37.3	2.1e-38
WP_155224545.1|1452119_1453367_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	54.8	2.3e-113
WP_014123414.1|1453547_1453745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014123413.1|1453906_1455529_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	26.2	4.9e-47
WP_155224546.1|1455584_1456454_-	DegV family EDD domain-containing protein	NA	A0A0N9SI50	Staphylococcus_phage	30.9	4.2e-13
WP_155224547.1|1456572_1457865_-	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	35.8	4.0e-68
>prophage 6
NZ_CP046246	Tetragenococcus halophilus strain YJ1 chromosome, complete genome	2476596	1568779	1627367	2476596	protease,transposase,tRNA	Streptococcus_phage(33.33%)	43	NA	NA
WP_155224124.1|1568779_1570198_+|transposase	ISLre2 family transposase	transposase	NA	NA	NA	NA
WP_061841008.1|1570428_1571151_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_061841007.1|1571280_1572684_-	L,D-transpeptidase family protein	NA	NA	NA	NA	NA
WP_014125800.1|1572953_1573928_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_069028902.1|1574723_1576013_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
WP_061841006.1|1576125_1576686_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_155224571.1|1576721_1580255_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_082786924.1|1580290_1581868_+	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_014125796.1|1581864_1582122_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
WP_014125795.1|1582197_1582617_+	septum formation initiator family protein	NA	NA	NA	NA	NA
WP_014125794.1|1582824_1583268_+	RNA-binding protein S1	NA	NA	NA	NA	NA
WP_061841005.1|1583365_1584790_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A0N7G7K4	Chrysochromulina_ericina_virus	24.1	9.4e-10
WP_061841004.1|1584770_1585319_+	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	26.6	1.2e-10
WP_155224572.1|1585387_1587490_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	H8ZJI5	Ostreococcus_tauri_virus	49.5	1.8e-110
WP_014125790.1|1587635_1588523_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_061841021.1|1588711_1590163_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SIS0	Klosneuvirus	37.5	3.8e-91
WP_162302190.1|1591084_1591318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061841289.1|1598243_1599431_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	70.5	9.5e-149
WP_061841290.1|1599586_1600363_+	esterase family protein	NA	NA	NA	NA	NA
WP_061841291.1|1600621_1601698_+	DUF871 domain-containing protein	NA	NA	NA	NA	NA
WP_162302230.1|1601691_1602585_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
WP_155224573.1|1602600_1604070_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_061841293.1|1604066_1604696_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_155224815.1|1604804_1606688_+	penicillin binding protein PBP4B	NA	NA	NA	NA	NA
WP_061841294.1|1606814_1607663_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_061841295.1|1607774_1608521_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_061841296.1|1608549_1609506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061841297.1|1609622_1610438_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_061841298.1|1610439_1611063_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_155224574.1|1611095_1613726_-	pyruvate, phosphate dikinase	NA	H8YJB7	Vibrio_phage	37.6	7.4e-85
WP_155224575.1|1613957_1614413_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_068708671.1|1614520_1615081_+	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_061841300.1|1615094_1615289_+	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_155224576.1|1615310_1615835_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_155224223.1|1616060_1617419_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_155224577.1|1617484_1618027_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002319817.1|1618214_1618895_-|transposase	IS6-like element ISS1N family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.1	2.5e-109
WP_014123534.1|1619086_1619653_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_069028532.1|1619701_1622359_+	MMPL family transporter	NA	NA	NA	NA	NA
WP_002319817.1|1622450_1623131_-|transposase	IS6-like element ISS1N family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.1	2.5e-109
WP_014123534.1|1623322_1623889_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_069028532.1|1623937_1626595_+	MMPL family transporter	NA	NA	NA	NA	NA
WP_002319817.1|1626686_1627367_-|transposase	IS6-like element ISS1N family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.1	2.5e-109
>prophage 7
NZ_CP046246	Tetragenococcus halophilus strain YJ1 chromosome, complete genome	2476596	1819781	1856575	2476596	lysis,tRNA,transposase,portal,integrase,terminase	Staphylococcus_phage(16.67%)	37	1845323:1845344	1859435:1859456
WP_061840730.1|1819781_1820429_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_069029245.1|1820622_1821465_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	43.8	4.2e-58
WP_155224604.1|1821504_1822275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061840727.1|1822443_1823253_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	37.8	7.9e-38
WP_094243219.1|1823368_1824205_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_155224605.1|1824284_1824674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094243221.1|1824744_1825215_-	universal stress protein	NA	NA	NA	NA	NA
WP_061840724.1|1825288_1825561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061840723.1|1825800_1826232_+	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
WP_155224606.1|1826691_1827963_-	AAA family ATPase	NA	A0A127AWE7	Bacillus_phage	47.7	2.9e-103
WP_155224607.1|1828102_1828741_+	DNA-3-methyladenine glycosylase	NA	NA	NA	NA	NA
WP_155224816.1|1828761_1829706_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
WP_155224817.1|1829711_1830467_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_155224608.1|1830612_1832031_+|transposase	ISLre2 family transposase	transposase	NA	NA	NA	NA
WP_155224609.1|1832324_1834538_+	RelA/SpoT family protein	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	35.1	1.7e-10
WP_061840719.1|1834542_1834992_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_094243224.1|1835216_1836866_+	phosphoenolpyruvate carboxykinase (ATP)	NA	NA	NA	NA	NA
WP_061840717.1|1837047_1837392_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_061840716.1|1837388_1840049_+	HAD-IC family P-type ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	28.5	1.3e-68
WP_061840751.1|1840194_1841685_+	phosphoglucomutase	NA	NA	NA	NA	NA
WP_155224610.1|1841839_1843222_+	amino acid permease	NA	NA	NA	NA	NA
WP_155224611.1|1843278_1844478_-	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	26.7	4.6e-34
WP_061840713.1|1844532_1845210_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
1845323:1845344	attL	TTTAGAAAAAACATAACTTTTT	NA	NA	NA	NA
WP_155224612.1|1845471_1846617_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5S7K9	Streptococcus_phage	33.0	2.9e-54
WP_155224613.1|1846668_1847298_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_155224614.1|1847509_1847776_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_155224615.1|1847868_1848069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155224616.1|1848211_1848361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155224617.1|1848472_1848805_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162302210.1|1848788_1849673_+	hypothetical protein	NA	A0A1X9I6L2	Streptococcus_phage	28.7	2.1e-20
WP_155224619.1|1849672_1851271_+	DNA primase	NA	A0A1B1P7L5	Bacillus_phage	29.7	1.3e-23
WP_155224620.1|1851538_1851787_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155224621.1|1851791_1852301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069029230.1|1852290_1852677_+	HNH endonuclease	NA	Q8SBK4	Clostridium_phage	38.9	3.4e-15
WP_155224622.1|1853095_1853572_+|terminase	phage terminase small subunit P27 family	terminase	NA	NA	NA	NA
WP_155224623.1|1853564_1855256_+|terminase	terminase large subunit	terminase	A0A2H4JBN3	uncultured_Caudovirales_phage	43.5	2.7e-125
WP_155224624.1|1855408_1856575_+|portal	phage portal protein	portal	A0A2H4JB06	uncultured_Caudovirales_phage	33.0	1.7e-57
1859435:1859456	attR	TTTAGAAAAAACATAACTTTTT	NA	NA	NA	NA
>prophage 8
NZ_CP046246	Tetragenococcus halophilus strain YJ1 chromosome, complete genome	2476596	1908670	1917074	2476596		Bacillus_phage(50.0%)	7	NA	NA
WP_014123956.1|1908670_1909444_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	25.1	1.2e-06
WP_155224642.1|1909458_1910751_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_155224643.1|1910747_1911983_+	SufS family cysteine desulfurase	NA	Q2XUY6	environmental_halophage	48.3	1.3e-111
WP_155224644.1|1911969_1912443_+	SUF system NifU family Fe-S cluster assembly protein	NA	A0A2H4N7M4	Lake_Baikal_phage	28.5	4.5e-09
WP_155224645.1|1912549_1913254_+	NAD-dependent protein deacylase	NA	S5M4R0	Bacillus_phage	30.6	6.9e-22
WP_155224646.1|1913482_1915222_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	29.0	5.6e-41
WP_069029204.1|1915211_1917074_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.1	3.7e-38
>prophage 9
NZ_CP046246	Tetragenococcus halophilus strain YJ1 chromosome, complete genome	2476596	1928904	1937194	2476596		Lactobacillus_phage(50.0%)	6	NA	NA
WP_061840804.1|1928904_1930143_-	NADPH-dependent FMN reductase	NA	A0A2P0ZL82	Lactobacillus_phage	61.8	8.3e-63
WP_061840803.1|1930161_1930770_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	52.8	4.1e-55
WP_061840802.1|1930969_1931674_-	deoxynucleoside kinase	NA	K4I4F1	Lactobacillus_phage	40.2	5.4e-43
WP_061840801.1|1932016_1933486_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	38.6	2.3e-80
WP_061840800.1|1933715_1935428_+	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	21.8	1.4e-07
WP_061840799.1|1935424_1937194_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.9	9.8e-49
>prophage 10
NZ_CP046246	Tetragenococcus halophilus strain YJ1 chromosome, complete genome	2476596	2057502	2070425	2476596		Streptococcus_phage(50.0%)	13	NA	NA
WP_061840414.1|2057502_2058903_-	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	28.9	2.7e-41
WP_069029149.1|2059122_2060865_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	44.3	1.7e-53
WP_061840413.1|2060882_2061194_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_014124100.1|2061255_2061852_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_155224678.1|2061881_2062535_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	51.7	8.3e-54
WP_014124102.1|2062531_2062864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061840411.1|2062906_2063839_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	35.0	4.2e-35
WP_155224679.1|2063862_2064693_+	signal peptidase	NA	NA	NA	NA	NA
WP_094243284.1|2064679_2065036_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	62.2	1.1e-07
WP_155224680.1|2065101_2065968_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	58.7	6.0e-84
WP_061840407.1|2066021_2067149_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_094243286.1|2067602_2068205_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0C5K925	Enterococcus_phage	56.0	5.1e-50
WP_155224681.1|2068229_2070425_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	65.4	7.3e-280
>prophage 11
NZ_CP046246	Tetragenococcus halophilus strain YJ1 chromosome, complete genome	2476596	2257337	2304231	2476596	protease,tRNA,transposase	unidentified_phage(11.11%)	42	NA	NA
WP_130706127.1|2257337_2258546_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	50.5	1.4e-46
WP_061840625.1|2258675_2259131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069029111.1|2259213_2259978_+	DNA-entry nuclease	NA	NA	NA	NA	NA
WP_155224730.1|2260330_2260903_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A249XZV3	Enterococcus_phage	75.0	7.1e-25
WP_012345024.1|2261339_2262668_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_010753318.1|2262748_2262898_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_155224731.1|2263112_2263679_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_103083436.1|2263671_2264358_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_014125356.1|2264376_2264583_+	YqgQ family protein	NA	NA	NA	NA	NA
WP_155224732.1|2264583_2265552_+	ROK family glucokinase	NA	NA	NA	NA	NA
WP_014125354.1|2265566_2265968_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_014125353.1|2266040_2266208_-	DUF3042 family protein	NA	NA	NA	NA	NA
WP_155224733.1|2266808_2268170_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_155224734.1|2269269_2270271_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	32.8	8.5e-42
WP_155224735.1|2270267_2271755_+	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_155224736.1|2271787_2272780_+	substrate-binding domain-containing protein	NA	C6ZCU4	Enterobacteria_phage	24.9	1.8e-15
WP_103083441.1|2272882_2273443_+	sugar O-acetyltransferase	NA	NA	NA	NA	NA
WP_014125344.1|2273563_2274391_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_155224737.1|2274387_2275257_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_162302222.1|2275285_2275699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014123593.1|2275875_2277234_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_155224739.1|2277207_2278110_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_094243349.1|2278463_2279180_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_061840610.1|2279697_2280186_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_155224740.1|2280160_2281168_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	41.4	2.8e-61
WP_103100220.1|2281370_2282168_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_155224741.1|2282274_2283156_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_041591846.1|2283370_2284090_+	UMP kinase	NA	NA	NA	NA	NA
WP_014125333.1|2284093_2284651_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_155224742.1|2285083_2285884_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.7	1.3e-21
WP_155224743.1|2285880_2286687_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_155224744.1|2286838_2288104_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_155224745.1|2288188_2289895_+|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_155224746.1|2290106_2294444_+	PolC-type DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	38.9	6.1e-20
WP_155224747.1|2294822_2295620_+	recombination regulator RecX	NA	NA	NA	NA	NA
WP_155224748.1|2295609_2296752_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_155224749.1|2296847_2297381_+	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_103097109.1|2297673_2298111_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_155224750.1|2298305_2299685_+	DUF21 domain-containing protein	NA	NA	NA	NA	NA
WP_155224751.1|2299872_2301453_+	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	27.9	1.3e-31
WP_061841338.1|2301526_2301844_-	DUF1827 family protein	NA	NA	NA	NA	NA
WP_094243355.1|2301987_2304231_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	39.6	3.3e-126
>prophage 12
NZ_CP046246	Tetragenococcus halophilus strain YJ1 chromosome, complete genome	2476596	2323683	2383082	2476596	transposase	Streptococcus_phage(15.38%)	48	NA	NA
WP_094243738.1|2323683_2324889_+|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	43.6	1.4e-78
WP_155224753.1|2325271_2325799_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_041591845.1|2326119_2326563_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A1X9I727	Streptococcus_phage	58.4	5.8e-43
WP_103103519.1|2326791_2327514_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_094243371.1|2327702_2328602_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	32.4	1.7e-25
WP_061841385.1|2328594_2329848_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_061841384.1|2330143_2331022_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014125285.1|2331122_2331995_-	LysR family transcriptional regulator	NA	A0A2H4J8I9	uncultured_Caudovirales_phage	38.0	7.0e-08
WP_061841383.1|2332108_2333107_+	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_069029098.1|2333291_2334143_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_162302223.1|2334200_2334926_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_155224755.1|2334909_2336271_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_155224756.1|2336741_2337305_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155224239.1|2337880_2339019_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	54.8	1.8e-75
WP_130706308.1|2339972_2340407_+	VOC family protein	NA	NA	NA	NA	NA
WP_061841098.1|2340662_2340887_+	glutaredoxin-like protein NrdH	NA	A0A0M7REK7	Lactobacillus_phage	47.9	1.8e-13
WP_155224757.1|2341000_2343163_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	62.9	5.9e-266
WP_103892652.1|2343188_2344157_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	69.8	3.7e-127
WP_094243698.1|2344382_2344820_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_130708545.1|2344923_2345874_-	D-2-hydroxyacid dehydrogenase	NA	M1I4S0	Paramecium_bursaria_Chlorella_virus	29.8	6.9e-33
WP_155224758.1|2346055_2347024_+	ornithine cyclodeaminase family protein	NA	A0A1V0SL93	Klosneuvirus	28.3	4.1e-17
WP_069028792.1|2348149_2348899_+	DUF4336 domain-containing protein	NA	NA	NA	NA	NA
WP_103892809.1|2348921_2349908_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_094243694.1|2350161_2350995_+	YitT family protein	NA	NA	NA	NA	NA
WP_155224759.1|2351315_2352086_+	HTH domain-containing protein	NA	NA	NA	NA	NA
WP_014123593.1|2352059_2353418_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_162302224.1|2353705_2354782_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_094243692.1|2354914_2356354_+	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
WP_094243691.1|2356389_2356713_+	PTS cellobiose transporter subunit IIB	NA	NA	NA	NA	NA
WP_094243690.1|2356743_2357058_+	PTS cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_094243689.1|2357079_2357595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094243688.1|2357610_2358960_+	PTS cellobiose transporter subunit IIC	NA	NA	NA	NA	NA
WP_094243687.1|2359484_2360033_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_094243686.1|2360236_2360668_+	YjdF family protein	NA	NA	NA	NA	NA
WP_094243685.1|2360862_2361066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155224822.1|2361455_2361635_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162302225.1|2362474_2363626_-	MFS transporter	NA	NA	NA	NA	NA
WP_061841374.1|2363718_2364144_+	GNAT family N-acetyltransferase	NA	A0A1X9I6I8	Streptococcus_phage	46.0	1.9e-27
WP_014124487.1|2364538_2365000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155224762.1|2365358_2365571_+	copper chaperone	NA	NA	NA	NA	NA
WP_162302226.1|2365642_2368159_+	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.7	3.4e-95
WP_014124664.1|2368377_2368833_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	34.9	1.1e-17
WP_155224764.1|2369204_2369900_+	endonuclease III	NA	NA	NA	NA	NA
WP_103892803.1|2370903_2371719_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_103892801.1|2376482_2377922_+	glutamate synthase subunit beta	NA	NA	NA	NA	NA
WP_155224765.1|2378140_2378518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155224766.1|2381244_2381754_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014123593.1|2381723_2383082_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP046246	Tetragenococcus halophilus strain YJ1 chromosome, complete genome	2476596	2395885	2455421	2476596	protease,tRNA,transposase	uncultured_virus(18.18%)	55	NA	NA
WP_103892782.1|2395885_2396518_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_014124508.1|2396780_2397065_+	co-chaperone GroES	NA	A0A221S465	uncultured_virus	42.4	9.5e-15
WP_155224771.1|2397094_2398735_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	54.0	1.1e-150
WP_061841450.1|2399278_2400106_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_061841449.1|2400239_2400953_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_061841448.1|2401110_2402379_-	PTS cellobiose transporter subunit IIC	NA	NA	NA	NA	NA
WP_061841447.1|2402538_2403936_+	glycoside hydrolase family 1 protein	NA	NA	NA	NA	NA
WP_069028902.1|2404496_2405786_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
WP_014124511.1|2406028_2407495_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	46.0	4.4e-111
WP_014124512.1|2407519_2408344_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	55.7	5.7e-76
WP_155224772.1|2408437_2410240_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_061841211.1|2410422_2411253_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014124515.1|2411278_2411734_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA	NA
WP_014124516.1|2411812_2412379_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_061841213.1|2412416_2412944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061841214.1|2412998_2413871_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_061841215.1|2414089_2414770_+	uracil-DNA glycosylase	NA	A0A076JX67	Equid_alphaherpesvirus	44.4	1.1e-45
WP_061841216.1|2414922_2415903_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_061841217.1|2416088_2416553_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_061841218.1|2416554_2417088_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_061841219.1|2417167_2417701_-	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	37.6	1.6e-23
WP_061841221.1|2418668_2419601_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_155224773.1|2420133_2421399_+	GntP family permease	NA	NA	NA	NA	NA
WP_061841223.1|2421427_2422567_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	38.3	3.4e-47
WP_103103414.1|2422672_2423404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155224774.1|2423702_2425022_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_155224775.1|2425050_2426031_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_155224776.1|2426051_2427374_+	alpha-L-fucosidase	NA	NA	NA	NA	NA
WP_155224777.1|2427370_2428744_+	family 1 glycosylhydrolase	NA	A0A0B5JD41	Pandoravirus	29.7	1.9e-44
WP_069028824.1|2428759_2429620_+	ROK family protein	NA	NA	NA	NA	NA
WP_014123593.1|2429708_2431067_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_069028825.1|2431311_2431563_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_094243658.1|2431563_2431881_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_155224778.1|2432107_2434054_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_083207560.1|2434071_2434641_+	SIS domain-containing protein	NA	A0A067XQR2	Caulobacter_phage	30.6	4.7e-13
WP_069028828.1|2434662_2434932_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_094243657.1|2434949_2436287_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
WP_103103408.1|2436300_2438292_+	transketolase	NA	NA	NA	NA	NA
WP_155224779.1|2438529_2439060_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_155224239.1|2439156_2440295_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	54.8	1.8e-75
WP_069028835.1|2440367_2440655_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_103892911.1|2440651_2440900_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_155224780.1|2441086_2441809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155224781.1|2441897_2443157_-|transposase	IS110 family transposase	transposase	Q9JMN8	Wolbachia_phage	25.7	4.4e-27
WP_069028839.1|2443436_2444108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155224782.1|2444783_2446718_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_069028841.1|2446704_2447169_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_069028842.1|2447181_2447496_+	PTS fructose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_069028843.1|2447534_2448587_+	PTS fructose transporter subunit IIC	NA	NA	NA	NA	NA
WP_069028844.1|2448825_2449284_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_155224783.1|2449380_2450733_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_069028846.1|2450828_2451482_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155224784.1|2451720_2452998_+	sugar-phosphate kinase	NA	NA	NA	NA	NA
WP_069029383.1|2453138_2453852_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_014123593.1|2454062_2455421_-|transposase	transposase	transposase	NA	NA	NA	NA
