assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009709475.1_ASM970947v1	NZ_CP039214	Piscirickettsia salmonis strain Psal-104a chromosome, complete genome	1	363106-363235	1	CRISPRCasFinder	no		DEDDh,RT,cas3,DinG,csa3	Orphan	ATAACTGTAAGGAGAAGGCATCGTTTTTCCTTATTGTATTTTTTAA	46	1	59	363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189	NZ_CP039215.1_78247-78210|NZ_CP039215.1_84871-84834|NZ_CP039215.1_55474-55511|NZ_CP039215.1_69393-69430|NZ_CP039215.1_120527-120564|NZ_CP039214.1_155095-155058|NZ_CP039214.1_256591-256554|NZ_CP039214.1_740103-740066|NZ_CP039214.1_795779-795742|NZ_CP039214.1_797931-797894|NZ_CP039214.1_893359-893322|NZ_CP039214.1_936986-936949|NZ_CP039214.1_991897-991860|NZ_CP039214.1_993014-992977|NZ_CP039214.1_1019612-1019575|NZ_CP039214.1_1052670-1052633|NZ_CP039214.1_1111160-1111123|NZ_CP039214.1_1224734-1224697|NZ_CP039214.1_1248882-1248845|NZ_CP039214.1_1283210-1283173|NZ_CP039214.1_1286716-1286679|NZ_CP039214.1_1600931-1600894|NZ_CP039214.1_1606506-1606469|NZ_CP039214.1_1698304-1698267|NZ_CP039214.1_1712668-1712631|NZ_CP039214.1_1744731-1744694|NZ_CP039214.1_1789553-1789516|NZ_CP039214.1_1947126-1947089|NZ_CP039214.1_2057396-2057359|NZ_CP039214.1_2345092-2345055|NZ_CP039214.1_2708106-2708069|NZ_CP039214.1_46479-46516|NZ_CP039214.1_157365-157402|NZ_CP039214.1_178807-178844|NZ_CP039214.1_183189-183226|NZ_CP039214.1_225981-226018|NZ_CP039214.1_461901-461938|NZ_CP039214.1_574736-574773|NZ_CP039214.1_694535-694572|NZ_CP039214.1_883556-883593|NZ_CP039214.1_920335-920372|NZ_CP039214.1_1023908-1023945|NZ_CP039214.1_1555921-1555958|NZ_CP039214.1_1827988-1828025|NZ_CP039214.1_1828122-1828159|NZ_CP039214.1_2126816-2126853|NZ_CP039214.1_2136117-2136154|NZ_CP039214.1_2218008-2218045|NZ_CP039214.1_2249887-2249924|NZ_CP039214.1_2258757-2258794|NZ_CP039214.1_2348307-2348344|NZ_CP039214.1_2802544-2802581|NZ_CP039214.1_2806370-2806407|NZ_CP039214.1_3009916-3009953|NZ_CP039214.1_1111026-1110989|NZ_CP039214.1_352899-352936|NZ_CP039214.1_1100981-1101018|NZ_CP039214.1_2250021-2250058|NZ_CP039216.1_20374-20411	NA	1	1	Orphan	DEDDh,RT,cas3,DinG,csa3	NA|73aa|up_9|NZ_CP039214.1_353608_353827_-,NA|65aa|up_5|NZ_CP039214.1_357808_358003_-,NA|141aa|up_3|NZ_CP039214.1_359325_359748_+,NA|105aa|up_0|NZ_CP039214.1_361884_362199_-,NA|97aa|down_0|NZ_CP039214.1_363764_364055_+,NA|233aa|down_1|NZ_CP039214.1_364092_364791_+,NA|99aa|down_2|NZ_CP039214.1_364807_365104_+,NA|384aa|down_3|NZ_CP039214.1_365221_366373_+,NA|192aa|down_4|NZ_CP039214.1_366645_367221_+	NA|73aa|up_9|NZ_CP039214.1_353608_353827_-	NA	NA|325aa|up_8|NZ_CP039214.1_354194_355169_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|85aa|up_7|NZ_CP039214.1_355707_355962_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|329aa|up_6|NZ_CP039214.1_356684_357671_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|65aa|up_5|NZ_CP039214.1_357808_358003_-	NA	NA|216aa|up_4|NZ_CP039214.1_358685_359333_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|141aa|up_3|NZ_CP039214.1_359325_359748_+	NA	NA|468aa|up_2|NZ_CP039214.1_359909_361313_+	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|192aa|up_1|NZ_CP039214.1_361363_361939_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|105aa|up_0|NZ_CP039214.1_361884_362199_-	NA	NA|97aa|down_0|NZ_CP039214.1_363764_364055_+	NA	NA|233aa|down_1|NZ_CP039214.1_364092_364791_+	NA	NA|99aa|down_2|NZ_CP039214.1_364807_365104_+	NA	NA|384aa|down_3|NZ_CP039214.1_365221_366373_+	NA	NA|192aa|down_4|NZ_CP039214.1_366645_367221_+	NA	NA|278aa|down_5|NZ_CP039214.1_367278_368112_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|395aa|down_6|NZ_CP039214.1_368227_369412_+	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|315aa|down_7|NZ_CP039214.1_369430_370375_-	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|262aa|down_8|NZ_CP039214.1_370679_371465_+	TIGR03545, TIGR03545, TIGR03545 family protein	NA|123aa|down_9|NZ_CP039214.1_371582_371951_-	COG3603, COG3603, Uncharacterized conserved protein [Function unknown]
GCF_009709475.1_ASM970947v1	NZ_CP039214	Piscirickettsia salmonis strain Psal-104a chromosome, complete genome	2	2626397-2626517	2	CRISPRCasFinder	no		DEDDh,RT,cas3,DinG,csa3	Orphan	TTGATTAAGTCCAAGGGCTGCTAACCATTGATAAGCT	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,DinG,csa3	NA|158aa|up_7|NZ_CP039214.1_2618022_2618496_-,NA|172aa|up_3|NZ_CP039214.1_2623883_2624399_+,NA|88aa|up_2|NZ_CP039214.1_2624631_2624895_+,NA|137aa|up_1|NZ_CP039214.1_2625163_2625574_+,NA|141aa|up_0|NZ_CP039214.1_2625817_2626240_-,NA	NA|205aa|up_9|NZ_CP039214.1_2616024_2616639_-	PRK05920, PRK05920, aromatic acid decarboxylase; Validated	NA|461aa|up_8|NZ_CP039214.1_2616631_2618014_-	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|158aa|up_7|NZ_CP039214.1_2618022_2618496_-	NA	NA|420aa|up_6|NZ_CP039214.1_2618628_2619888_+	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|694aa|up_5|NZ_CP039214.1_2620343_2622425_+	cd14016, STKc_CK1, Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1	NA|337aa|up_4|NZ_CP039214.1_2622728_2623739_+	cd00180, PKc, Catalytic domain of Protein Kinases	NA|172aa|up_3|NZ_CP039214.1_2623883_2624399_+	NA	NA|88aa|up_2|NZ_CP039214.1_2624631_2624895_+	NA	NA|137aa|up_1|NZ_CP039214.1_2625163_2625574_+	NA	NA|141aa|up_0|NZ_CP039214.1_2625817_2626240_-	NA	NA|155aa|down_0|NZ_CP039214.1_2627894_2628359_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|160aa|down_1|NZ_CP039214.1_2628415_2628895_-	pfam01710, HTH_Tnp_IS630, Transposase	NA|132aa|down_2|NZ_CP039214.1_2629752_2630148_+	pfam17775, UPF0225, UPF0225 domain	NA|265aa|down_3|NZ_CP039214.1_2630144_2630939_-	pfam01863, DUF45, Protein of unknown function DUF45	NA|242aa|down_4|NZ_CP039214.1_2631117_2631843_-	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|396aa|down_5|NZ_CP039214.1_2632088_2633276_+	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|376aa|down_6|NZ_CP039214.1_2633630_2634758_-	pfam13546, DDE_5, DDE superfamily endonuclease	NA|181aa|down_7|NZ_CP039214.1_2635088_2635631_-	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|229aa|down_8|NZ_CP039214.1_2635627_2636314_-	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|204aa|down_9|NZ_CP039214.1_2636317_2636929_-	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase
GCF_009709475.1_ASM970947v1	NZ_CP039215	Piscirickettsia salmonis strain Psal-104a plasmid unnamed1, complete sequence	1	137109-137332	1	CRT	no		RT	Orphan	AAACGGAACACAAACGGAACACAAA	25	0	0	NA	NA	NA	3	3	Orphan	DEDDh,RT,cas3,DinG,csa3	NA|68aa|up_9|NZ_CP039215.1_127600_127804_+,NA|57aa|up_8|NZ_CP039215.1_127800_127971_+,NA|86aa|up_5|NZ_CP039215.1_129998_130256_-,NA|49aa|up_3|NZ_CP039215.1_132784_132931_+,NA|563aa|down_2|NZ_CP039215.1_139466_141155_-,NA|163aa|down_4|NZ_CP039215.1_142698_143187_+,NA|243aa|down_5|NZ_CP039215.1_143244_143973_+,NA|327aa|down_6|NZ_CP039215.1_144429_145410_+,NA|60aa|down_8|NZ_CP039215.1_146587_146767_+,NA|99aa|down_9|NZ_CP039215.1_146985_147282_+	NA|68aa|up_9|NZ_CP039215.1_127600_127804_+	NA	NA|57aa|up_8|NZ_CP039215.1_127800_127971_+	NA	NA|361aa|up_7|NZ_CP039215.1_128157_129240_-	pfam00665, rve, Integrase core domain	NA|167aa|up_6|NZ_CP039215.1_129396_129897_+	pfam14319, Zn_Tnp_IS91, Transposase zinc-binding domain	NA|86aa|up_5|NZ_CP039215.1_129998_130256_-	NA	NA|396aa|up_4|NZ_CP039215.1_130324_131511_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|49aa|up_3|NZ_CP039215.1_132784_132931_+	NA	NA|272aa|up_2|NZ_CP039215.1_133260_134076_+	pfam04986, Y2_Tnp, Putative transposase	NA|197aa|up_1|NZ_CP039215.1_134321_134912_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|340aa|up_0|NZ_CP039215.1_135877_136897_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|56aa|down_0|NZ_CP039215.1_138546_138714_-	PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	NA|243aa|down_1|NZ_CP039215.1_138769_139498_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|563aa|down_2|NZ_CP039215.1_139466_141155_-	NA	NA|325aa|down_3|NZ_CP039215.1_141498_142473_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|163aa|down_4|NZ_CP039215.1_142698_143187_+	NA	NA|243aa|down_5|NZ_CP039215.1_143244_143973_+	NA	NA|327aa|down_6|NZ_CP039215.1_144429_145410_+	NA	NA|243aa|down_7|NZ_CP039215.1_145555_146284_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|60aa|down_8|NZ_CP039215.1_146587_146767_+	NA	NA|99aa|down_9|NZ_CP039215.1_146985_147282_+	NA
