assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009708995.1_ASM970899v1	NZ_CP039040	Piscirickettsia salmonis strain Psal-072 chromosome, complete genome	1	360384-360513	1	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	ATAACTGTAAGGAGAAGGCATCGTTTTTCCTTATTGTATTTTTTAA	46	1	54	360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467	NZ_CP039045.1_30344-30307|NZ_CP039042.1_23925-23888|NZ_CP039041.1_4681-4644|NZ_CP039041.1_188958-188921|NZ_CP039041.1_214352-214315|NZ_CP039041.1_193605-193642|NZ_CP039040.1_256088-256051|NZ_CP039040.1_337412-337375|NZ_CP039040.1_458429-458392|NZ_CP039040.1_699933-699896|NZ_CP039040.1_723914-723877|NZ_CP039040.1_781726-781689|NZ_CP039040.1_881412-881375|NZ_CP039040.1_925990-925953|NZ_CP039040.1_1356702-1356665|NZ_CP039040.1_1378789-1378752|NZ_CP039040.1_1412867-1412830|NZ_CP039040.1_1538065-1538028|NZ_CP039040.1_1567833-1567796|NZ_CP039040.1_1732741-1732704|NZ_CP039040.1_1758135-1758098|NZ_CP039040.1_1799922-1799885|NZ_CP039040.1_1941846-1941809|NZ_CP039040.1_1979886-1979849|NZ_CP039040.1_2242353-2242316|NZ_CP039040.1_2335901-2335864|NZ_CP039040.1_2704095-2704058|NZ_CP039040.1_2994354-2994317|NZ_CP039040.1_46489-46526|NZ_CP039040.1_177199-177236|NZ_CP039040.1_181871-181908|NZ_CP039040.1_225188-225225|NZ_CP039040.1_459719-459756|NZ_CP039040.1_511385-511422|NZ_CP039040.1_558945-558982|NZ_CP039040.1_676047-676084|NZ_CP039040.1_909339-909376|NZ_CP039040.1_1020841-1020878|NZ_CP039040.1_1089128-1089165|NZ_CP039040.1_1131079-1131116|NZ_CP039040.1_1590058-1590095|NZ_CP039040.1_1737388-1737425|NZ_CP039040.1_1929921-1929958|NZ_CP039040.1_1969841-1969878|NZ_CP039040.1_2046005-2046042|NZ_CP039040.1_2060140-2060177|NZ_CP039040.1_2168700-2168737|NZ_CP039040.1_2171618-2171655|NZ_CP039040.1_2248270-2248307|NZ_CP039040.1_2339127-2339164|NZ_CP039040.1_2795729-2795766|NZ_CP039040.1_2998449-2998486|NZ_CP039040.1_3009309-3009346|NZ_CP039040.1_1133640-1133603	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|290aa|up_9|NZ_CP039040.1_349389_350259_-,NA|243aa|up_8|NZ_CP039040.1_350403_351132_-,NA|73aa|up_7|NZ_CP039040.1_351994_352213_-,NA|65aa|up_4|NZ_CP039040.1_355087_355282_-,NA|105aa|up_0|NZ_CP039040.1_359162_359477_-,NA|97aa|down_0|NZ_CP039040.1_361330_361621_+,NA|233aa|down_1|NZ_CP039040.1_361658_362357_+,NA|99aa|down_2|NZ_CP039040.1_362373_362670_+,NA|263aa|down_3|NZ_CP039040.1_362850_363639_+,NA|128aa|down_4|NZ_CP039040.1_363843_364227_+,NA|192aa|down_5|NZ_CP039040.1_364499_365075_+,NA|262aa|down_9|NZ_CP039040.1_368533_369319_+	NA|290aa|up_9|NZ_CP039040.1_349389_350259_-	NA	NA|243aa|up_8|NZ_CP039040.1_350403_351132_-	NA	NA|73aa|up_7|NZ_CP039040.1_351994_352213_-	NA	NA|85aa|up_6|NZ_CP039040.1_352986_353241_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|329aa|up_5|NZ_CP039040.1_353963_354950_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|65aa|up_4|NZ_CP039040.1_355087_355282_-	NA	NA|354aa|up_3|NZ_CP039040.1_355964_357026_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|468aa|up_2|NZ_CP039040.1_357187_358591_+	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|192aa|up_1|NZ_CP039040.1_358641_359217_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|105aa|up_0|NZ_CP039040.1_359162_359477_-	NA	NA|97aa|down_0|NZ_CP039040.1_361330_361621_+	NA	NA|233aa|down_1|NZ_CP039040.1_361658_362357_+	NA	NA|99aa|down_2|NZ_CP039040.1_362373_362670_+	NA	NA|263aa|down_3|NZ_CP039040.1_362850_363639_+	NA	NA|128aa|down_4|NZ_CP039040.1_363843_364227_+	NA	NA|192aa|down_5|NZ_CP039040.1_364499_365075_+	NA	NA|278aa|down_6|NZ_CP039040.1_365132_365966_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|395aa|down_7|NZ_CP039040.1_366081_367266_+	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|315aa|down_8|NZ_CP039040.1_367284_368229_-	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|262aa|down_9|NZ_CP039040.1_368533_369319_+	NA
GCF_009708995.1_ASM970899v1	NZ_CP039040	Piscirickettsia salmonis strain Psal-072 chromosome, complete genome	2	1397572-1397678	2	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	GCGCTTGATAATCTCCCTTTGTTTATTAAAATGCAAGA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|154aa|up_6|NZ_CP039040.1_1386389_1386851_+,NA|62aa|up_4|NZ_CP039040.1_1389786_1389972_+,NA|105aa|up_2|NZ_CP039040.1_1394668_1394983_-,NA|87aa|up_1|NZ_CP039040.1_1395240_1395501_+,NA|204aa|down_3|NZ_CP039040.1_1402641_1403253_+,NA|87aa|down_4|NZ_CP039040.1_1403437_1403698_+,NA|67aa|down_6|NZ_CP039040.1_1405535_1405736_-	NA|421aa|up_9|NZ_CP039040.1_1381783_1383046_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|602aa|up_8|NZ_CP039040.1_1383133_1384939_-	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|266aa|up_7|NZ_CP039040.1_1385422_1386220_-	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|154aa|up_6|NZ_CP039040.1_1386389_1386851_+	NA	NA|652aa|up_5|NZ_CP039040.1_1387149_1389105_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|62aa|up_4|NZ_CP039040.1_1389786_1389972_+	NA	NA|330aa|up_3|NZ_CP039040.1_1390305_1391295_+	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]	NA|105aa|up_2|NZ_CP039040.1_1394668_1394983_-	NA	NA|87aa|up_1|NZ_CP039040.1_1395240_1395501_+	NA	NA|163aa|up_0|NZ_CP039040.1_1395520_1396009_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|313aa|down_0|NZ_CP039040.1_1398711_1399650_+	pfam00665, rve, Integrase core domain	NA|522aa|down_1|NZ_CP039040.1_1399675_1401241_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|276aa|down_2|NZ_CP039040.1_1401447_1402275_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|204aa|down_3|NZ_CP039040.1_1402641_1403253_+	NA	NA|87aa|down_4|NZ_CP039040.1_1403437_1403698_+	NA	NA|141aa|down_5|NZ_CP039040.1_1404690_1405113_+	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins	NA|67aa|down_6|NZ_CP039040.1_1405535_1405736_-	NA	NA|269aa|down_7|NZ_CP039040.1_1406110_1406917_+	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|324aa|down_8|NZ_CP039040.1_1407022_1407994_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold	NA|324aa|down_9|NZ_CP039040.1_1407975_1408947_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold
GCF_009708995.1_ASM970899v1	NZ_CP039040	Piscirickettsia salmonis strain Psal-072 chromosome, complete genome	3	2624625-2624745	3	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	TTGATTAAGTCCAAGGGCTGCTAACCATTGATAAGCT	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|158aa|up_8|NZ_CP039040.1_2615962_2616436_-,NA|172aa|up_4|NZ_CP039040.1_2621823_2622339_+,NA|88aa|up_3|NZ_CP039040.1_2622571_2622835_+,NA|137aa|up_2|NZ_CP039040.1_2623103_2623514_+,NA|141aa|up_1|NZ_CP039040.1_2623757_2624180_-,NA|47aa|up_0|NZ_CP039040.1_2624212_2624353_+,NA	NA|461aa|up_9|NZ_CP039040.1_2614571_2615954_-	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|158aa|up_8|NZ_CP039040.1_2615962_2616436_-	NA	NA|420aa|up_7|NZ_CP039040.1_2616568_2617828_+	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|694aa|up_6|NZ_CP039040.1_2618283_2620365_+	cd14016, STKc_CK1, Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1	NA|337aa|up_5|NZ_CP039040.1_2620668_2621679_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|172aa|up_4|NZ_CP039040.1_2621823_2622339_+	NA	NA|88aa|up_3|NZ_CP039040.1_2622571_2622835_+	NA	NA|137aa|up_2|NZ_CP039040.1_2623103_2623514_+	NA	NA|141aa|up_1|NZ_CP039040.1_2623757_2624180_-	NA	NA|47aa|up_0|NZ_CP039040.1_2624212_2624353_+	NA	NA|155aa|down_0|NZ_CP039040.1_2626122_2626587_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|161aa|down_1|NZ_CP039040.1_2626643_2627126_-	pfam01710, HTH_Tnp_IS630, Transposase	NA|132aa|down_2|NZ_CP039040.1_2627980_2628376_+	pfam17775, UPF0225, UPF0225 domain	NA|265aa|down_3|NZ_CP039040.1_2628372_2629167_-	pfam01863, DUF45, Protein of unknown function DUF45	NA|242aa|down_4|NZ_CP039040.1_2629345_2630071_-	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|396aa|down_5|NZ_CP039040.1_2630316_2631504_+	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|181aa|down_6|NZ_CP039040.1_2632080_2632623_-	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|229aa|down_7|NZ_CP039040.1_2632619_2633306_-	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|204aa|down_8|NZ_CP039040.1_2633309_2633921_-	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase	NA|340aa|down_9|NZ_CP039040.1_2633967_2634987_-	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase
GCF_009708995.1_ASM970899v1	NZ_CP039042	Piscirickettsia salmonis strain Psal-072 plasmid unnamed2, complete sequence	1	128460-128683	1	CRT	no	RT	RT	Unclear	AAACGGAACACAAACGGAACACAAA	25	0	0	NA	NA	NA	3	3	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|138aa|up_9|NZ_CP039042.1_117289_117703_-,NA|343aa|up_6|NZ_CP039042.1_120377_121406_+,NA|49aa|up_3|NZ_CP039042.1_124146_124293_+,NA	NA|138aa|up_9|NZ_CP039042.1_117289_117703_-	NA	NA|243aa|up_8|NZ_CP039042.1_117800_118529_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|385aa|up_7|NZ_CP039042.1_118595_119749_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|343aa|up_6|NZ_CP039042.1_120377_121406_+	NA	NA|385aa|up_5|NZ_CP039042.1_121685_122839_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	RT|376aa|up_4|NZ_CP039042.1_122798_123926_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|49aa|up_3|NZ_CP039042.1_124146_124293_+	NA	NA|272aa|up_2|NZ_CP039042.1_124622_125438_+	pfam04986, Y2_Tnp, Putative transposase	NA|197aa|up_1|NZ_CP039042.1_125683_126274_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|340aa|up_0|NZ_CP039042.1_127228_128248_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|243aa|down_0|NZ_CP039042.1_129171_129900_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|859aa|down_1|NZ_CP039042.1_130103_132680_+	TIGR00601, UV_excision_repair_protein_RAD23_homolog_A, UV excision repair protein Rad23	NA|326aa|down_2|NZ_CP039042.1_132796_133774_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|358aa|down_3|NZ_CP039042.1_134068_135142_-	PLN00061, PLN00061, photosystem II protein Psb27; Provisional	NA|245aa|down_4|NZ_CP039042.1_135465_136200_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|194aa|down_5|NZ_CP039042.1_136255_136837_+	pfam13683, rve_3, Integrase core domain	NA|91aa|down_6|NZ_CP039042.1_136911_137184_-	pfam01527, HTH_Tnp_1, Transposase	NA|180aa|down_7|NZ_CP039042.1_137765_138305_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|243aa|down_8|NZ_CP039042.1_138334_139063_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|229aa|down_9|NZ_CP039042.1_139310_139997_+	COG3177, COG3177, Fic family protein [Function unknown]
