assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009708955.1_ASM970895v1	NZ_CP039032	Piscirickettsia salmonis strain Psal-070 chromosome, complete genome	1	363130-363259	1	CRISPRCasFinder	no		DEDDh,csa3,RT,DinG,cas3	Orphan	ATAACTGTAAGGAGAAGGCATCGTTTTTCCTTATTGTATTTTTTAA	46	1	56	363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213	NZ_CP039032.1_155095-155058|NZ_CP039032.1_256591-256554|NZ_CP039032.1_962118-962081|NZ_CP039032.1_1051668-1051631|NZ_CP039032.1_1060538-1060501|NZ_CP039032.1_1092417-1092380|NZ_CP039032.1_1174306-1174269|NZ_CP039032.1_1183607-1183570|NZ_CP039032.1_1482589-1482552|NZ_CP039032.1_1482723-1482686|NZ_CP039032.1_1753555-1753518|NZ_CP039032.1_2312997-2312960|NZ_CP039032.1_2416570-2416533|NZ_CP039032.1_2453349-2453312|NZ_CP039032.1_2642346-2642309|NZ_CP039032.1_2761857-2761820|NZ_CP039032.1_46479-46516|NZ_CP039032.1_157365-157402|NZ_CP039032.1_178807-178844|NZ_CP039032.1_183189-183226|NZ_CP039032.1_225981-226018|NZ_CP039032.1_461924-461961|NZ_CP039032.1_603556-603593|NZ_CP039032.1_965333-965370|NZ_CP039032.1_1253027-1253064|NZ_CP039032.1_1363585-1363622|NZ_CP039032.1_1521158-1521195|NZ_CP039032.1_1565980-1566017|NZ_CP039032.1_1598043-1598080|NZ_CP039032.1_1612407-1612444|NZ_CP039032.1_1702970-1703007|NZ_CP039032.1_1708545-1708582|NZ_CP039032.1_2050189-2050226|NZ_CP039032.1_2053695-2053732|NZ_CP039032.1_2088023-2088060|NZ_CP039032.1_2112171-2112208|NZ_CP039032.1_2225745-2225782|NZ_CP039032.1_2284235-2284272|NZ_CP039032.1_2317293-2317330|NZ_CP039032.1_2343891-2343928|NZ_CP039032.1_2345008-2345045|NZ_CP039032.1_2399919-2399956|NZ_CP039032.1_2443546-2443583|NZ_CP039032.1_2538974-2539011|NZ_CP039032.1_2541126-2541163|NZ_CP039032.1_2596778-2596815|NZ_CP039032.1_2823347-2823384|NZ_CP039032.1_2827173-2827210|NZ_CP039032.1_3029484-3029521|NZ_CP039032.1_1060404-1060367|NZ_CP039032.1_2235924-2235887|NZ_CP039032.1_352923-352960|NZ_CP039032.1_2225879-2225916|NZ_CP039034.1_5737-5774|NZ_CP039033.1_66642-66679|NZ_CP039033.1_30986-30949	NA	1	1	Orphan	DEDDh,csa3,RT,DinG,cas3	NA|73aa|up_9|NZ_CP039032.1_353632_353851_-,NA|65aa|up_5|NZ_CP039032.1_357832_358027_-,NA|141aa|up_3|NZ_CP039032.1_359349_359772_+,NA|105aa|up_0|NZ_CP039032.1_361908_362223_-,NA|97aa|down_0|NZ_CP039032.1_363788_364079_+,NA|233aa|down_1|NZ_CP039032.1_364116_364815_+,NA|99aa|down_2|NZ_CP039032.1_364831_365128_+,NA|382aa|down_3|NZ_CP039032.1_365251_366397_+,NA|192aa|down_4|NZ_CP039032.1_366669_367245_+	NA|73aa|up_9|NZ_CP039032.1_353632_353851_-	NA	NA|325aa|up_8|NZ_CP039032.1_354218_355193_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|85aa|up_7|NZ_CP039032.1_355731_355986_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|329aa|up_6|NZ_CP039032.1_356708_357695_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|65aa|up_5|NZ_CP039032.1_357832_358027_-	NA	NA|216aa|up_4|NZ_CP039032.1_358709_359357_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|141aa|up_3|NZ_CP039032.1_359349_359772_+	NA	NA|468aa|up_2|NZ_CP039032.1_359933_361337_+	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|192aa|up_1|NZ_CP039032.1_361387_361963_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|105aa|up_0|NZ_CP039032.1_361908_362223_-	NA	NA|97aa|down_0|NZ_CP039032.1_363788_364079_+	NA	NA|233aa|down_1|NZ_CP039032.1_364116_364815_+	NA	NA|99aa|down_2|NZ_CP039032.1_364831_365128_+	NA	NA|382aa|down_3|NZ_CP039032.1_365251_366397_+	NA	NA|192aa|down_4|NZ_CP039032.1_366669_367245_+	NA	NA|278aa|down_5|NZ_CP039032.1_367302_368136_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|395aa|down_6|NZ_CP039032.1_368251_369436_+	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|315aa|down_7|NZ_CP039032.1_369454_370399_-	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|262aa|down_8|NZ_CP039032.1_370703_371489_+	TIGR03545, TIGR03545, TIGR03545 family protein	NA|123aa|down_9|NZ_CP039032.1_371606_371975_-	COG3603, COG3603, Uncharacterized conserved protein [Function unknown]
GCF_009708955.1_ASM970895v1	NZ_CP039032	Piscirickettsia salmonis strain Psal-070 chromosome, complete genome	2	685145-685265	2	CRISPRCasFinder	no		DEDDh,csa3,RT,DinG,cas3	Orphan	AGCTTATCAATGGTTAGTAGCCCTTGGACTTAATCAA	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,RT,DinG,cas3	NA|61aa|up_1|NZ_CP039032.1_682185_682368_+,NA|141aa|down_0|NZ_CP039032.1_685421_685844_+,NA|137aa|down_1|NZ_CP039032.1_686087_686498_-,NA|88aa|down_2|NZ_CP039032.1_686766_687030_-,NA|172aa|down_3|NZ_CP039032.1_687262_687778_-,NA|158aa|down_7|NZ_CP039032.1_693165_693639_+	NA|340aa|up_9|NZ_CP039032.1_673666_674686_+	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase	NA|204aa|up_8|NZ_CP039032.1_674732_675344_+	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase	NA|229aa|up_7|NZ_CP039032.1_675347_676034_+	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|181aa|up_6|NZ_CP039032.1_676030_676573_+	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|396aa|up_5|NZ_CP039032.1_678385_679573_-	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|242aa|up_4|NZ_CP039032.1_679818_680544_+	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|265aa|up_3|NZ_CP039032.1_680722_681517_+	pfam01863, DUF45, Protein of unknown function DUF45	NA|132aa|up_2|NZ_CP039032.1_681513_681909_-	pfam17775, UPF0225, UPF0225 domain	NA|61aa|up_1|NZ_CP039032.1_682185_682368_+	NA	NA|155aa|up_0|NZ_CP039032.1_683302_683767_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|141aa|down_0|NZ_CP039032.1_685421_685844_+	NA	NA|137aa|down_1|NZ_CP039032.1_686087_686498_-	NA	NA|88aa|down_2|NZ_CP039032.1_686766_687030_-	NA	NA|172aa|down_3|NZ_CP039032.1_687262_687778_-	NA	NA|337aa|down_4|NZ_CP039032.1_687922_688933_-	cd00180, PKc, Catalytic domain of Protein Kinases	NA|694aa|down_5|NZ_CP039032.1_689236_691318_-	cd14016, STKc_CK1, Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1	NA|420aa|down_6|NZ_CP039032.1_691773_693033_-	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|158aa|down_7|NZ_CP039032.1_693165_693639_+	NA	NA|461aa|down_8|NZ_CP039032.1_693647_695030_+	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|205aa|down_9|NZ_CP039032.1_695022_695637_+	PRK05920, PRK05920, aromatic acid decarboxylase; Validated
GCF_009708955.1_ASM970895v1	NZ_CP039032	Piscirickettsia salmonis strain Psal-070 chromosome, complete genome	3	1617428-1617534	3	CRISPRCasFinder	no		DEDDh,csa3,RT,DinG,cas3	Orphan	GCGCTTGATAATCTCCCTTTGTTTATTAAAATGCAAGA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,RT,DinG,cas3	NA|154aa|up_9|NZ_CP039032.1_1606497_1606959_+,NA|62aa|up_7|NZ_CP039032.1_1609892_1610078_+,NA|105aa|up_2|NZ_CP039032.1_1614525_1614840_-,NA|87aa|up_1|NZ_CP039032.1_1615096_1615357_+,NA|86aa|down_0|NZ_CP039032.1_1618238_1618496_+,NA|204aa|down_4|NZ_CP039032.1_1622498_1623110_+,NA|87aa|down_5|NZ_CP039032.1_1623294_1623555_+,NA|67aa|down_7|NZ_CP039032.1_1625396_1625597_-	NA|154aa|up_9|NZ_CP039032.1_1606497_1606959_+	NA	NA|652aa|up_8|NZ_CP039032.1_1607257_1609213_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|62aa|up_7|NZ_CP039032.1_1609892_1610078_+	NA	NA|330aa|up_6|NZ_CP039032.1_1610411_1611401_+	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]	NA|192aa|up_5|NZ_CP039032.1_1611494_1612070_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|122aa|up_4|NZ_CP039032.1_1612015_1612381_-	pfam13384, HTH_23, Homeodomain-like domain	NA|541aa|up_3|NZ_CP039032.1_1612812_1614435_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|105aa|up_2|NZ_CP039032.1_1614525_1614840_-	NA	NA|87aa|up_1|NZ_CP039032.1_1615096_1615357_+	NA	NA|163aa|up_0|NZ_CP039032.1_1615376_1615865_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|86aa|down_0|NZ_CP039032.1_1618238_1618496_+	NA	NA|313aa|down_1|NZ_CP039032.1_1618565_1619504_+	pfam00665, rve, Integrase core domain	NA|522aa|down_2|NZ_CP039032.1_1619529_1621095_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|276aa|down_3|NZ_CP039032.1_1621304_1622132_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|204aa|down_4|NZ_CP039032.1_1622498_1623110_+	NA	NA|87aa|down_5|NZ_CP039032.1_1623294_1623555_+	NA	NA|318aa|down_6|NZ_CP039032.1_1624016_1624970_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|67aa|down_7|NZ_CP039032.1_1625396_1625597_-	NA	NA|269aa|down_8|NZ_CP039032.1_1625971_1626778_+	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|324aa|down_9|NZ_CP039032.1_1626883_1627855_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold
GCF_009708955.1_ASM970895v1	NZ_CP039033	Piscirickettsia salmonis strain Psal-070 plasmid unnamed1, complete sequence	1	1232-1455	1	CRT	no		RT	Orphan	AAACGGAACACAAACGGAACACAAA	25	0	0	NA	NA	NA	3	3	Orphan	DEDDh,csa3,RT,DinG,cas3	NA,NA|563aa|down_2|NZ_CP039033.1_3589_5278_-,NA|160aa|down_4|NZ_CP039033.1_6830_7310_+,NA|243aa|down_5|NZ_CP039033.1_7367_8096_+,NA|327aa|down_6|NZ_CP039033.1_8552_9533_+,NA|60aa|down_8|NZ_CP039033.1_10710_10890_+,NA|99aa|down_9|NZ_CP039033.1_11108_11405_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|340aa|up_0|NZ_CP039033.1_0_1020_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|56aa|down_0|NZ_CP039033.1_2669_2837_-	PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	NA|243aa|down_1|NZ_CP039033.1_2892_3621_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|563aa|down_2|NZ_CP039033.1_3589_5278_-	NA	NA|325aa|down_3|NZ_CP039033.1_5621_6596_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|160aa|down_4|NZ_CP039033.1_6830_7310_+	NA	NA|243aa|down_5|NZ_CP039033.1_7367_8096_+	NA	NA|327aa|down_6|NZ_CP039033.1_8552_9533_+	NA	NA|243aa|down_7|NZ_CP039033.1_9678_10407_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|60aa|down_8|NZ_CP039033.1_10710_10890_+	NA	NA|99aa|down_9|NZ_CP039033.1_11108_11405_+	NA
