assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009708875.1_ASM970887v1	NZ_CP038962	Piscirickettsia salmonis strain Psal-051 chromosome, complete genome	1	360407-360536	1	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	ATAACTGTAAGGAGAAGGCATCGTTTTTCCTTATTGTATTTTTTAA	46	1	49	360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490|360453-360490	NZ_CP038966.1_30344-30307|NZ_CP038963.1_23925-23888|NZ_CP038962.1_256094-256057|NZ_CP038962.1_337435-337398|NZ_CP038962.1_458452-458415|NZ_CP038962.1_700826-700789|NZ_CP038962.1_724807-724770|NZ_CP038962.1_782619-782582|NZ_CP038962.1_884669-884632|NZ_CP038962.1_929247-929210|NZ_CP038962.1_1359955-1359918|NZ_CP038962.1_1382042-1382005|NZ_CP038962.1_1416120-1416083|NZ_CP038962.1_1541318-1541281|NZ_CP038962.1_1571086-1571049|NZ_CP038962.1_1735035-1734998|NZ_CP038962.1_1760429-1760392|NZ_CP038962.1_1802216-1802179|NZ_CP038962.1_1944140-1944103|NZ_CP038962.1_1982180-1982143|NZ_CP038962.1_2244648-2244611|NZ_CP038962.1_2338196-2338159|NZ_CP038962.1_2706382-2706345|NZ_CP038962.1_2996630-2996593|NZ_CP038962.1_46489-46526|NZ_CP038962.1_177205-177242|NZ_CP038962.1_181877-181914|NZ_CP038962.1_225194-225231|NZ_CP038962.1_459742-459779|NZ_CP038962.1_511408-511445|NZ_CP038962.1_559838-559875|NZ_CP038962.1_676940-676977|NZ_CP038962.1_912596-912633|NZ_CP038962.1_1024098-1024135|NZ_CP038962.1_1092385-1092422|NZ_CP038962.1_1134336-1134373|NZ_CP038962.1_1739682-1739719|NZ_CP038962.1_1932215-1932252|NZ_CP038962.1_1972135-1972172|NZ_CP038962.1_2048299-2048336|NZ_CP038962.1_2062434-2062471|NZ_CP038962.1_2170995-2171032|NZ_CP038962.1_2173913-2173950|NZ_CP038962.1_2250565-2250602|NZ_CP038962.1_2341422-2341459|NZ_CP038962.1_2798016-2798053|NZ_CP038962.1_3000725-3000762|NZ_CP038962.1_3011585-3011622|NZ_CP038962.1_1136897-1136860	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|290aa|up_9|NZ_CP038962.1_349412_350282_-,NA|243aa|up_8|NZ_CP038962.1_350426_351155_-,NA|73aa|up_7|NZ_CP038962.1_352017_352236_-,NA|65aa|up_4|NZ_CP038962.1_355110_355305_-,NA|105aa|up_0|NZ_CP038962.1_359185_359500_-,NA|97aa|down_0|NZ_CP038962.1_361353_361644_+,NA|233aa|down_1|NZ_CP038962.1_361681_362380_+,NA|99aa|down_2|NZ_CP038962.1_362396_362693_+,NA|282aa|down_3|NZ_CP038962.1_362816_363662_+,NA|128aa|down_4|NZ_CP038962.1_363866_364250_+,NA|192aa|down_5|NZ_CP038962.1_364522_365098_+,NA|262aa|down_9|NZ_CP038962.1_368556_369342_+	NA|290aa|up_9|NZ_CP038962.1_349412_350282_-	NA	NA|243aa|up_8|NZ_CP038962.1_350426_351155_-	NA	NA|73aa|up_7|NZ_CP038962.1_352017_352236_-	NA	NA|85aa|up_6|NZ_CP038962.1_353009_353264_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|329aa|up_5|NZ_CP038962.1_353986_354973_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|65aa|up_4|NZ_CP038962.1_355110_355305_-	NA	NA|354aa|up_3|NZ_CP038962.1_355987_357049_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|468aa|up_2|NZ_CP038962.1_357210_358614_+	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|192aa|up_1|NZ_CP038962.1_358664_359240_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|105aa|up_0|NZ_CP038962.1_359185_359500_-	NA	NA|97aa|down_0|NZ_CP038962.1_361353_361644_+	NA	NA|233aa|down_1|NZ_CP038962.1_361681_362380_+	NA	NA|99aa|down_2|NZ_CP038962.1_362396_362693_+	NA	NA|282aa|down_3|NZ_CP038962.1_362816_363662_+	NA	NA|128aa|down_4|NZ_CP038962.1_363866_364250_+	NA	NA|192aa|down_5|NZ_CP038962.1_364522_365098_+	NA	NA|278aa|down_6|NZ_CP038962.1_365155_365989_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|395aa|down_7|NZ_CP038962.1_366104_367289_+	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|315aa|down_8|NZ_CP038962.1_367307_368252_-	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|262aa|down_9|NZ_CP038962.1_368556_369342_+	NA
GCF_009708875.1_ASM970887v1	NZ_CP038962	Piscirickettsia salmonis strain Psal-051 chromosome, complete genome	2	1400825-1400931	2	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	GCGCTTGATAATCTCCCTTTGTTTATTAAAATGCAAGA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|154aa|up_6|NZ_CP038962.1_1389642_1390104_+,NA|62aa|up_4|NZ_CP038962.1_1393039_1393225_+,NA|105aa|up_2|NZ_CP038962.1_1397921_1398236_-,NA|87aa|up_1|NZ_CP038962.1_1398493_1398754_+,NA|204aa|down_3|NZ_CP038962.1_1405894_1406506_+,NA|87aa|down_4|NZ_CP038962.1_1406690_1406951_+,NA|67aa|down_6|NZ_CP038962.1_1408788_1408989_-	NA|421aa|up_9|NZ_CP038962.1_1385036_1386299_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|602aa|up_8|NZ_CP038962.1_1386386_1388192_-	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|266aa|up_7|NZ_CP038962.1_1388675_1389473_-	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|154aa|up_6|NZ_CP038962.1_1389642_1390104_+	NA	NA|652aa|up_5|NZ_CP038962.1_1390402_1392358_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|62aa|up_4|NZ_CP038962.1_1393039_1393225_+	NA	NA|330aa|up_3|NZ_CP038962.1_1393558_1394548_+	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]	NA|105aa|up_2|NZ_CP038962.1_1397921_1398236_-	NA	NA|87aa|up_1|NZ_CP038962.1_1398493_1398754_+	NA	NA|163aa|up_0|NZ_CP038962.1_1398773_1399262_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|313aa|down_0|NZ_CP038962.1_1401964_1402903_+	pfam00665, rve, Integrase core domain	NA|522aa|down_1|NZ_CP038962.1_1402928_1404494_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|276aa|down_2|NZ_CP038962.1_1404700_1405528_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|204aa|down_3|NZ_CP038962.1_1405894_1406506_+	NA	NA|87aa|down_4|NZ_CP038962.1_1406690_1406951_+	NA	NA|141aa|down_5|NZ_CP038962.1_1407943_1408366_+	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins	NA|67aa|down_6|NZ_CP038962.1_1408788_1408989_-	NA	NA|269aa|down_7|NZ_CP038962.1_1409363_1410170_+	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|324aa|down_8|NZ_CP038962.1_1410275_1411247_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold	NA|324aa|down_9|NZ_CP038962.1_1411228_1412200_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold
GCF_009708875.1_ASM970887v1	NZ_CP038962	Piscirickettsia salmonis strain Psal-051 chromosome, complete genome	3	2626920-2627040	3	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	TTGATTAAGTCCAAGGGCTGCTAACCATTGATAAGCT	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|158aa|up_8|NZ_CP038962.1_2618257_2618731_-,NA|172aa|up_4|NZ_CP038962.1_2624118_2624634_+,NA|88aa|up_3|NZ_CP038962.1_2624866_2625130_+,NA|137aa|up_2|NZ_CP038962.1_2625398_2625809_+,NA|141aa|up_1|NZ_CP038962.1_2626052_2626475_-,NA|47aa|up_0|NZ_CP038962.1_2626507_2626648_+,NA	NA|461aa|up_9|NZ_CP038962.1_2616866_2618249_-	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|158aa|up_8|NZ_CP038962.1_2618257_2618731_-	NA	NA|420aa|up_7|NZ_CP038962.1_2618863_2620123_+	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|694aa|up_6|NZ_CP038962.1_2620578_2622660_+	cd14016, STKc_CK1, Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1	NA|337aa|up_5|NZ_CP038962.1_2622963_2623974_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|172aa|up_4|NZ_CP038962.1_2624118_2624634_+	NA	NA|88aa|up_3|NZ_CP038962.1_2624866_2625130_+	NA	NA|137aa|up_2|NZ_CP038962.1_2625398_2625809_+	NA	NA|141aa|up_1|NZ_CP038962.1_2626052_2626475_-	NA	NA|47aa|up_0|NZ_CP038962.1_2626507_2626648_+	NA	NA|155aa|down_0|NZ_CP038962.1_2628417_2628882_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|161aa|down_1|NZ_CP038962.1_2628938_2629421_-	pfam01710, HTH_Tnp_IS630, Transposase	NA|132aa|down_2|NZ_CP038962.1_2630275_2630671_+	pfam17775, UPF0225, UPF0225 domain	NA|265aa|down_3|NZ_CP038962.1_2630667_2631462_-	pfam01863, DUF45, Protein of unknown function DUF45	NA|242aa|down_4|NZ_CP038962.1_2631640_2632366_-	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|396aa|down_5|NZ_CP038962.1_2632611_2633799_+	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|181aa|down_6|NZ_CP038962.1_2634375_2634918_-	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|229aa|down_7|NZ_CP038962.1_2634914_2635601_-	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|204aa|down_8|NZ_CP038962.1_2635604_2636216_-	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase	NA|340aa|down_9|NZ_CP038962.1_2636262_2637282_-	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase
GCF_009708875.1_ASM970887v1	NZ_CP038963	Piscirickettsia salmonis strain Psal-051 plasmid unnamed1, complete sequence	1	128460-128683	1	CRT	no	RT	RT	Unclear	AAACGGAACACAAACGGAACACAAA	25	0	0	NA	NA	NA	3	3	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|138aa|up_9|NZ_CP038963.1_117289_117703_-,NA|343aa|up_6|NZ_CP038963.1_120377_121406_+,NA|49aa|up_3|NZ_CP038963.1_124146_124293_+,NA|256aa|down_3|NZ_CP038963.1_133148_133916_-,NA|86aa|down_5|NZ_CP038963.1_134915_135173_-,NA|155aa|down_6|NZ_CP038963.1_136306_136771_+	NA|138aa|up_9|NZ_CP038963.1_117289_117703_-	NA	NA|243aa|up_8|NZ_CP038963.1_117800_118529_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|385aa|up_7|NZ_CP038963.1_118595_119749_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|343aa|up_6|NZ_CP038963.1_120377_121406_+	NA	NA|385aa|up_5|NZ_CP038963.1_121685_122839_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	RT|376aa|up_4|NZ_CP038963.1_122798_123926_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|49aa|up_3|NZ_CP038963.1_124146_124293_+	NA	NA|272aa|up_2|NZ_CP038963.1_124622_125438_+	pfam04986, Y2_Tnp, Putative transposase	NA|197aa|up_1|NZ_CP038963.1_125683_126274_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|340aa|up_0|NZ_CP038963.1_127228_128248_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|243aa|down_0|NZ_CP038963.1_129171_129900_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|624aa|down_1|NZ_CP038963.1_130103_131975_+	TIGR00601, UV_excision_repair_protein_RAD23_homolog_A, UV excision repair protein Rad23	NA|326aa|down_2|NZ_CP038963.1_132054_133032_+	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|256aa|down_3|NZ_CP038963.1_133148_133916_-	NA	NA|326aa|down_4|NZ_CP038963.1_133919_134897_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|86aa|down_5|NZ_CP038963.1_134915_135173_-	NA	NA|155aa|down_6|NZ_CP038963.1_136306_136771_+	NA	NA|57aa|down_7|NZ_CP038963.1_137109_137280_+	pfam14319, Zn_Tnp_IS91, Transposase zinc-binding domain	NA|243aa|down_8|NZ_CP038963.1_138950_139679_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|453aa|down_9|NZ_CP038963.1_139862_141221_-	cd18013, DEXQc_bact_SNF2, DEXQ-box helicase domain of bacterial SNF2 family proteins
