assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009708855.1_ASM970885v1	NZ_CP038957	Piscirickettsia salmonis strain Psal-041 chromosome, complete genome	1	360312-360441	1	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	ATAACTGTAAGGAGAAGGCATCGTTTTTCCTTATTGTATTTTTTAA	46	1	49	360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395|360358-360395	NZ_CP038961.1_30344-30307|NZ_CP038958.1_45806-45769|NZ_CP038957.1_256088-256051|NZ_CP038957.1_337340-337303|NZ_CP038957.1_458357-458320|NZ_CP038957.1_699861-699824|NZ_CP038957.1_723842-723805|NZ_CP038957.1_781654-781617|NZ_CP038957.1_883704-883667|NZ_CP038957.1_932912-932875|NZ_CP038957.1_1365102-1365065|NZ_CP038957.1_1387189-1387152|NZ_CP038957.1_1421267-1421230|NZ_CP038957.1_1546465-1546428|NZ_CP038957.1_1576233-1576196|NZ_CP038957.1_1739894-1739857|NZ_CP038957.1_1765288-1765251|NZ_CP038957.1_1807075-1807038|NZ_CP038957.1_1948999-1948962|NZ_CP038957.1_1987039-1987002|NZ_CP038957.1_2249507-2249470|NZ_CP038957.1_2343054-2343017|NZ_CP038957.1_2711248-2711211|NZ_CP038957.1_3001516-3001479|NZ_CP038957.1_46489-46526|NZ_CP038957.1_177199-177236|NZ_CP038957.1_181871-181908|NZ_CP038957.1_225188-225225|NZ_CP038957.1_459647-459684|NZ_CP038957.1_511313-511350|NZ_CP038957.1_558873-558910|NZ_CP038957.1_675975-676012|NZ_CP038957.1_916261-916298|NZ_CP038957.1_1027763-1027800|NZ_CP038957.1_1096050-1096087|NZ_CP038957.1_1138001-1138038|NZ_CP038957.1_1744541-1744578|NZ_CP038957.1_1937074-1937111|NZ_CP038957.1_1976994-1977031|NZ_CP038957.1_2053158-2053195|NZ_CP038957.1_2067293-2067330|NZ_CP038957.1_2175854-2175891|NZ_CP038957.1_2178772-2178809|NZ_CP038957.1_2255424-2255461|NZ_CP038957.1_2346280-2346317|NZ_CP038957.1_2802882-2802919|NZ_CP038957.1_3005611-3005648|NZ_CP038957.1_3016471-3016508|NZ_CP038957.1_1140562-1140525	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|290aa|up_9|NZ_CP038957.1_349317_350187_-,NA|243aa|up_8|NZ_CP038957.1_350331_351060_-,NA|73aa|up_7|NZ_CP038957.1_351922_352141_-,NA|65aa|up_4|NZ_CP038957.1_355015_355210_-,NA|105aa|up_0|NZ_CP038957.1_359090_359405_-,NA|97aa|down_0|NZ_CP038957.1_361258_361549_+,NA|233aa|down_1|NZ_CP038957.1_361586_362285_+,NA|99aa|down_2|NZ_CP038957.1_362301_362598_+,NA|282aa|down_3|NZ_CP038957.1_362721_363567_+,NA|128aa|down_4|NZ_CP038957.1_363771_364155_+,NA|192aa|down_5|NZ_CP038957.1_364427_365003_+,NA|262aa|down_9|NZ_CP038957.1_368461_369247_+	NA|290aa|up_9|NZ_CP038957.1_349317_350187_-	NA	NA|243aa|up_8|NZ_CP038957.1_350331_351060_-	NA	NA|73aa|up_7|NZ_CP038957.1_351922_352141_-	NA	NA|85aa|up_6|NZ_CP038957.1_352914_353169_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|329aa|up_5|NZ_CP038957.1_353891_354878_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|65aa|up_4|NZ_CP038957.1_355015_355210_-	NA	NA|354aa|up_3|NZ_CP038957.1_355892_356954_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|468aa|up_2|NZ_CP038957.1_357115_358519_+	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|192aa|up_1|NZ_CP038957.1_358569_359145_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|105aa|up_0|NZ_CP038957.1_359090_359405_-	NA	NA|97aa|down_0|NZ_CP038957.1_361258_361549_+	NA	NA|233aa|down_1|NZ_CP038957.1_361586_362285_+	NA	NA|99aa|down_2|NZ_CP038957.1_362301_362598_+	NA	NA|282aa|down_3|NZ_CP038957.1_362721_363567_+	NA	NA|128aa|down_4|NZ_CP038957.1_363771_364155_+	NA	NA|192aa|down_5|NZ_CP038957.1_364427_365003_+	NA	NA|278aa|down_6|NZ_CP038957.1_365060_365894_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|395aa|down_7|NZ_CP038957.1_366009_367194_+	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|315aa|down_8|NZ_CP038957.1_367212_368157_-	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|262aa|down_9|NZ_CP038957.1_368461_369247_+	NA
GCF_009708855.1_ASM970885v1	NZ_CP038957	Piscirickettsia salmonis strain Psal-041 chromosome, complete genome	2	1405972-1406078	2	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	GCGCTTGATAATCTCCCTTTGTTTATTAAAATGCAAGA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|154aa|up_6|NZ_CP038957.1_1394789_1395251_+,NA|62aa|up_4|NZ_CP038957.1_1398186_1398372_+,NA|105aa|up_2|NZ_CP038957.1_1403068_1403383_-,NA|87aa|up_1|NZ_CP038957.1_1403640_1403901_+,NA|204aa|down_3|NZ_CP038957.1_1411041_1411653_+,NA|87aa|down_4|NZ_CP038957.1_1411837_1412098_+,NA|67aa|down_6|NZ_CP038957.1_1413935_1414136_-	NA|421aa|up_9|NZ_CP038957.1_1390183_1391446_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|602aa|up_8|NZ_CP038957.1_1391533_1393339_-	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|266aa|up_7|NZ_CP038957.1_1393822_1394620_-	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|154aa|up_6|NZ_CP038957.1_1394789_1395251_+	NA	NA|652aa|up_5|NZ_CP038957.1_1395549_1397505_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|62aa|up_4|NZ_CP038957.1_1398186_1398372_+	NA	NA|330aa|up_3|NZ_CP038957.1_1398705_1399695_+	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]	NA|105aa|up_2|NZ_CP038957.1_1403068_1403383_-	NA	NA|87aa|up_1|NZ_CP038957.1_1403640_1403901_+	NA	NA|163aa|up_0|NZ_CP038957.1_1403920_1404409_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|313aa|down_0|NZ_CP038957.1_1407111_1408050_+	pfam00665, rve, Integrase core domain	NA|522aa|down_1|NZ_CP038957.1_1408075_1409641_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|276aa|down_2|NZ_CP038957.1_1409847_1410675_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|204aa|down_3|NZ_CP038957.1_1411041_1411653_+	NA	NA|87aa|down_4|NZ_CP038957.1_1411837_1412098_+	NA	NA|141aa|down_5|NZ_CP038957.1_1413090_1413513_+	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins	NA|67aa|down_6|NZ_CP038957.1_1413935_1414136_-	NA	NA|269aa|down_7|NZ_CP038957.1_1414510_1415317_+	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|324aa|down_8|NZ_CP038957.1_1415422_1416394_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold	NA|324aa|down_9|NZ_CP038957.1_1416375_1417347_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold
GCF_009708855.1_ASM970885v1	NZ_CP038957	Piscirickettsia salmonis strain Psal-041 chromosome, complete genome	3	2631778-2631898	3	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	TTGATTAAGTCCAAGGGCTGCTAACCATTGATAAGCT	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|158aa|up_8|NZ_CP038957.1_2623115_2623589_-,NA|172aa|up_4|NZ_CP038957.1_2628976_2629492_+,NA|88aa|up_3|NZ_CP038957.1_2629724_2629988_+,NA|137aa|up_2|NZ_CP038957.1_2630256_2630667_+,NA|141aa|up_1|NZ_CP038957.1_2630910_2631333_-,NA|47aa|up_0|NZ_CP038957.1_2631365_2631506_+,NA	NA|461aa|up_9|NZ_CP038957.1_2621724_2623107_-	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|158aa|up_8|NZ_CP038957.1_2623115_2623589_-	NA	NA|420aa|up_7|NZ_CP038957.1_2623721_2624981_+	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|694aa|up_6|NZ_CP038957.1_2625436_2627518_+	cd14016, STKc_CK1, Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1	NA|337aa|up_5|NZ_CP038957.1_2627821_2628832_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|172aa|up_4|NZ_CP038957.1_2628976_2629492_+	NA	NA|88aa|up_3|NZ_CP038957.1_2629724_2629988_+	NA	NA|137aa|up_2|NZ_CP038957.1_2630256_2630667_+	NA	NA|141aa|up_1|NZ_CP038957.1_2630910_2631333_-	NA	NA|47aa|up_0|NZ_CP038957.1_2631365_2631506_+	NA	NA|155aa|down_0|NZ_CP038957.1_2633275_2633740_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|161aa|down_1|NZ_CP038957.1_2633796_2634279_-	pfam01710, HTH_Tnp_IS630, Transposase	NA|132aa|down_2|NZ_CP038957.1_2635133_2635529_+	pfam17775, UPF0225, UPF0225 domain	NA|265aa|down_3|NZ_CP038957.1_2635525_2636320_-	pfam01863, DUF45, Protein of unknown function DUF45	NA|242aa|down_4|NZ_CP038957.1_2636498_2637224_-	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|396aa|down_5|NZ_CP038957.1_2637469_2638657_+	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|181aa|down_6|NZ_CP038957.1_2639233_2639776_-	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|229aa|down_7|NZ_CP038957.1_2639772_2640459_-	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|204aa|down_8|NZ_CP038957.1_2640462_2641074_-	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase	NA|340aa|down_9|NZ_CP038957.1_2641120_2642140_-	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase
GCF_009708855.1_ASM970885v1	NZ_CP038958	Piscirickettsia salmonis strain Psal-041 plasmid unnamed1, complete sequence	1	1232-1455	1	CRT	no		RT	Orphan	AAACGGAACACAAACGGAACACAAA	25	0	0	NA	NA	NA	3	3	Orphan	DEDDh,RT,DinG,cas3,csa3	NA,NA|86aa|down_3|NZ_CP038958.1_6564_6822_-,NA|155aa|down_4|NZ_CP038958.1_7955_8420_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|340aa|up_0|NZ_CP038958.1_0_1020_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|243aa|down_0|NZ_CP038958.1_1943_2672_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|859aa|down_1|NZ_CP038958.1_2875_5452_+	TIGR00601, UV_excision_repair_protein_RAD23_homolog_A, UV excision repair protein Rad23	NA|326aa|down_2|NZ_CP038958.1_5568_6546_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|86aa|down_3|NZ_CP038958.1_6564_6822_-	NA	NA|155aa|down_4|NZ_CP038958.1_7955_8420_+	NA	NA|57aa|down_5|NZ_CP038958.1_8758_8929_+	pfam14319, Zn_Tnp_IS91, Transposase zinc-binding domain	NA|243aa|down_6|NZ_CP038958.1_10599_11328_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|453aa|down_7|NZ_CP038958.1_11511_12870_-	cd18013, DEXQc_bact_SNF2, DEXQ-box helicase domain of bacterial SNF2 family proteins	NA|189aa|down_8|NZ_CP038958.1_12959_13526_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|229aa|down_9|NZ_CP038958.1_13529_14216_-	COG3177, COG3177, Fic family protein [Function unknown]
