assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009708835.1_ASM970883v1	NZ_CP038952	Piscirickettsia salmonis strain Psal-040 chromosome, complete genome	1	359999-360128	1	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	ATAACTGTAAGGAGAAGGCATCGTTTTTCCTTATTGTATTTTTTAA	46	1	49	360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082|360045-360082	NZ_CP038956.1_30344-30307|NZ_CP038953.1_91596-91559|NZ_CP038952.1_256087-256050|NZ_CP038952.1_337027-336990|NZ_CP038952.1_458044-458007|NZ_CP038952.1_699533-699496|NZ_CP038952.1_723514-723477|NZ_CP038952.1_781338-781301|NZ_CP038952.1_883388-883351|NZ_CP038952.1_932596-932559|NZ_CP038952.1_1362146-1362109|NZ_CP038952.1_1384233-1384196|NZ_CP038952.1_1418311-1418274|NZ_CP038952.1_1543508-1543471|NZ_CP038952.1_1573276-1573239|NZ_CP038952.1_1736937-1736900|NZ_CP038952.1_1762331-1762294|NZ_CP038952.1_1804118-1804081|NZ_CP038952.1_1959755-1959718|NZ_CP038952.1_1997795-1997758|NZ_CP038952.1_2260547-2260510|NZ_CP038952.1_2354096-2354059|NZ_CP038952.1_2722860-2722823|NZ_CP038952.1_3013118-3013081|NZ_CP038952.1_46489-46526|NZ_CP038952.1_177198-177235|NZ_CP038952.1_181870-181907|NZ_CP038952.1_225187-225224|NZ_CP038952.1_459334-459371|NZ_CP038952.1_511000-511037|NZ_CP038952.1_558560-558597|NZ_CP038952.1_675647-675684|NZ_CP038952.1_915945-915982|NZ_CP038952.1_1026322-1026359|NZ_CP038952.1_1094609-1094646|NZ_CP038952.1_1136560-1136597|NZ_CP038952.1_1741584-1741621|NZ_CP038952.1_1947830-1947867|NZ_CP038952.1_1987750-1987787|NZ_CP038952.1_2063913-2063950|NZ_CP038952.1_2078048-2078085|NZ_CP038952.1_2186606-2186643|NZ_CP038952.1_2189524-2189561|NZ_CP038952.1_2266464-2266501|NZ_CP038952.1_2357322-2357359|NZ_CP038952.1_2814493-2814530|NZ_CP038952.1_3017213-3017250|NZ_CP038952.1_3028073-3028110|NZ_CP038952.1_1139121-1139084	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|290aa|up_9|NZ_CP038952.1_349004_349874_-,NA|243aa|up_8|NZ_CP038952.1_350018_350747_-,NA|73aa|up_7|NZ_CP038952.1_351609_351828_-,NA|65aa|up_4|NZ_CP038952.1_354702_354897_-,NA|105aa|up_0|NZ_CP038952.1_358777_359092_-,NA|97aa|down_0|NZ_CP038952.1_360945_361236_+,NA|233aa|down_1|NZ_CP038952.1_361273_361972_+,NA|99aa|down_2|NZ_CP038952.1_361988_362285_+,NA|282aa|down_3|NZ_CP038952.1_362408_363254_+,NA|128aa|down_4|NZ_CP038952.1_363458_363842_+,NA|192aa|down_5|NZ_CP038952.1_364114_364690_+,NA|262aa|down_9|NZ_CP038952.1_368148_368934_+	NA|290aa|up_9|NZ_CP038952.1_349004_349874_-	NA	NA|243aa|up_8|NZ_CP038952.1_350018_350747_-	NA	NA|73aa|up_7|NZ_CP038952.1_351609_351828_-	NA	NA|85aa|up_6|NZ_CP038952.1_352601_352856_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|329aa|up_5|NZ_CP038952.1_353578_354565_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|65aa|up_4|NZ_CP038952.1_354702_354897_-	NA	NA|354aa|up_3|NZ_CP038952.1_355579_356641_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|468aa|up_2|NZ_CP038952.1_356802_358206_+	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|192aa|up_1|NZ_CP038952.1_358256_358832_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|105aa|up_0|NZ_CP038952.1_358777_359092_-	NA	NA|97aa|down_0|NZ_CP038952.1_360945_361236_+	NA	NA|233aa|down_1|NZ_CP038952.1_361273_361972_+	NA	NA|99aa|down_2|NZ_CP038952.1_361988_362285_+	NA	NA|282aa|down_3|NZ_CP038952.1_362408_363254_+	NA	NA|128aa|down_4|NZ_CP038952.1_363458_363842_+	NA	NA|192aa|down_5|NZ_CP038952.1_364114_364690_+	NA	NA|278aa|down_6|NZ_CP038952.1_364747_365581_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|395aa|down_7|NZ_CP038952.1_365696_366881_+	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|315aa|down_8|NZ_CP038952.1_366899_367844_-	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|262aa|down_9|NZ_CP038952.1_368148_368934_+	NA
GCF_009708835.1_ASM970883v1	NZ_CP038952	Piscirickettsia salmonis strain Psal-040 chromosome, complete genome	2	1403016-1403122	2	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	GCGCTTGATAATCTCCCTTTGTTTATTAAAATGCAAGA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|154aa|up_6|NZ_CP038952.1_1391833_1392295_+,NA|62aa|up_4|NZ_CP038952.1_1395230_1395416_+,NA|105aa|up_2|NZ_CP038952.1_1400112_1400427_-,NA|87aa|up_1|NZ_CP038952.1_1400684_1400945_+,NA|204aa|down_3|NZ_CP038952.1_1408085_1408697_+,NA|87aa|down_4|NZ_CP038952.1_1408881_1409142_+,NA|67aa|down_6|NZ_CP038952.1_1410979_1411180_-	NA|421aa|up_9|NZ_CP038952.1_1387227_1388490_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|602aa|up_8|NZ_CP038952.1_1388577_1390383_-	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|266aa|up_7|NZ_CP038952.1_1390866_1391664_-	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|154aa|up_6|NZ_CP038952.1_1391833_1392295_+	NA	NA|652aa|up_5|NZ_CP038952.1_1392593_1394549_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|62aa|up_4|NZ_CP038952.1_1395230_1395416_+	NA	NA|330aa|up_3|NZ_CP038952.1_1395749_1396739_+	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]	NA|105aa|up_2|NZ_CP038952.1_1400112_1400427_-	NA	NA|87aa|up_1|NZ_CP038952.1_1400684_1400945_+	NA	NA|163aa|up_0|NZ_CP038952.1_1400964_1401453_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|313aa|down_0|NZ_CP038952.1_1404155_1405094_+	pfam00665, rve, Integrase core domain	NA|522aa|down_1|NZ_CP038952.1_1405119_1406685_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|276aa|down_2|NZ_CP038952.1_1406891_1407719_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|204aa|down_3|NZ_CP038952.1_1408085_1408697_+	NA	NA|87aa|down_4|NZ_CP038952.1_1408881_1409142_+	NA	NA|141aa|down_5|NZ_CP038952.1_1410134_1410557_+	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins	NA|67aa|down_6|NZ_CP038952.1_1410979_1411180_-	NA	NA|269aa|down_7|NZ_CP038952.1_1411554_1412361_+	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|324aa|down_8|NZ_CP038952.1_1412466_1413438_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold	NA|324aa|down_9|NZ_CP038952.1_1413419_1414391_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold
GCF_009708835.1_ASM970883v1	NZ_CP038952	Piscirickettsia salmonis strain Psal-040 chromosome, complete genome	3	2643109-2643229	3	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	TTGATTAAGTCCAAGGGCTGCTAACCATTGATAAGCT	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|158aa|up_8|NZ_CP038952.1_2634446_2634920_-,NA|172aa|up_4|NZ_CP038952.1_2640307_2640823_+,NA|88aa|up_3|NZ_CP038952.1_2641055_2641319_+,NA|137aa|up_2|NZ_CP038952.1_2641587_2641998_+,NA|141aa|up_1|NZ_CP038952.1_2642241_2642664_-,NA|47aa|up_0|NZ_CP038952.1_2642696_2642837_+,NA	NA|461aa|up_9|NZ_CP038952.1_2633055_2634438_-	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|158aa|up_8|NZ_CP038952.1_2634446_2634920_-	NA	NA|420aa|up_7|NZ_CP038952.1_2635052_2636312_+	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|694aa|up_6|NZ_CP038952.1_2636767_2638849_+	cd14016, STKc_CK1, Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1	NA|337aa|up_5|NZ_CP038952.1_2639152_2640163_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|172aa|up_4|NZ_CP038952.1_2640307_2640823_+	NA	NA|88aa|up_3|NZ_CP038952.1_2641055_2641319_+	NA	NA|137aa|up_2|NZ_CP038952.1_2641587_2641998_+	NA	NA|141aa|up_1|NZ_CP038952.1_2642241_2642664_-	NA	NA|47aa|up_0|NZ_CP038952.1_2642696_2642837_+	NA	NA|155aa|down_0|NZ_CP038952.1_2644606_2645071_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|161aa|down_1|NZ_CP038952.1_2645127_2645610_-	pfam01710, HTH_Tnp_IS630, Transposase	NA|132aa|down_2|NZ_CP038952.1_2646464_2646860_+	pfam17775, UPF0225, UPF0225 domain	NA|265aa|down_3|NZ_CP038952.1_2646856_2647651_-	pfam01863, DUF45, Protein of unknown function DUF45	NA|242aa|down_4|NZ_CP038952.1_2647829_2648555_-	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|396aa|down_5|NZ_CP038952.1_2648800_2649988_+	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|181aa|down_6|NZ_CP038952.1_2650564_2651107_-	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|229aa|down_7|NZ_CP038952.1_2651103_2651790_-	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|204aa|down_8|NZ_CP038952.1_2651793_2652405_-	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase	NA|340aa|down_9|NZ_CP038952.1_2652451_2653471_-	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase
GCF_009708835.1_ASM970883v1	NZ_CP038953	Piscirickettsia salmonis strain Psal-040 plasmid unnamed1, complete sequence	1	1232-1455	1	CRT	no		RT	Orphan	AAACGGAACACAAACGGAACACAAA	25	0	0	NA	NA	NA	3	3	Orphan	DEDDh,RT,DinG,cas3,csa3	NA,NA|160aa|down_3|NZ_CP038953.1_9596_10076_+,NA|243aa|down_4|NZ_CP038953.1_10133_10862_+,NA|327aa|down_5|NZ_CP038953.1_11318_12299_+,NA|162aa|down_8|NZ_CP038953.1_15061_15547_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|340aa|up_0|NZ_CP038953.1_0_1020_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|243aa|down_0|NZ_CP038953.1_1943_2672_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|859aa|down_1|NZ_CP038953.1_2875_5452_+	TIGR00601, UV_excision_repair_protein_RAD23_homolog_A, UV excision repair protein Rad23	NA|326aa|down_2|NZ_CP038953.1_5568_6546_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|160aa|down_3|NZ_CP038953.1_9596_10076_+	NA	NA|243aa|down_4|NZ_CP038953.1_10133_10862_+	NA	NA|327aa|down_5|NZ_CP038953.1_11318_12299_+	NA	NA|219aa|down_6|NZ_CP038953.1_12435_13092_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|326aa|down_7|NZ_CP038953.1_13454_14432_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|162aa|down_8|NZ_CP038953.1_15061_15547_-	NA	NA|621aa|down_9|NZ_CP038953.1_15580_17443_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
